Wall clock time and date at job start Tue Mar 31 2020 20:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 N 1.39935 * 125.75459 * 269.69426 * 4 3 2 6 6 C 1.30445 * 108.89588 * 179.84530 * 5 4 3 7 7 C 1.41294 * 108.02622 * 0.40636 * 6 5 4 8 8 C 1.47423 * 126.41955 * 179.71856 * 7 6 5 9 9 O 1.21603 * 120.00057 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99883 * 0.02826 * 8 7 6 11 11 C 1.46497 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47109 * 179.97438 * 11 10 8 13 13 N 1.46895 * 109.47089 * 179.97438 * 12 11 10 14 14 C 1.46899 * 111.00214 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47580 * 180.02562 * 14 13 12 16 16 O 1.21290 * 119.99951 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00083 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00027 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00018 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00164 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99993 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47626 * 89.99443 * 22 20 18 24 24 H 1.48497 * 109.47018 * 210.00087 * 22 20 18 25 25 H 1.48506 * 109.46898 * 329.99544 * 22 20 18 26 26 C 1.34257 * 125.75382 * 90.00013 * 4 3 2 27 27 C 1.50707 * 126.29183 * 359.95729 * 26 4 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.07999 * 125.99405 * 180.16772 * 6 5 4 36 36 H 0.97002 * 119.99846 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.46714 * 299.99678 * 11 10 8 38 38 H 1.09000 * 109.47453 * 59.99665 * 11 10 8 39 39 H 1.08996 * 109.46826 * 299.99871 * 12 11 10 40 40 H 1.09000 * 109.47200 * 59.99555 * 12 11 10 41 41 H 1.00904 * 111.00202 * 56.04657 * 13 12 11 42 42 H 1.09000 * 109.46862 * 300.00413 * 14 13 12 43 43 H 1.09002 * 109.46925 * 59.99533 * 14 13 12 44 44 H 0.96996 * 120.00070 * 0.02562 * 17 15 14 45 45 H 0.96995 * 120.00368 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47196 * 89.99968 * 27 26 4 47 47 H 1.08999 * 109.47138 * 210.00189 * 27 26 4 48 48 H 1.09006 * 109.46939 * 330.00183 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3231 1.4485 1.1346 6 6 5.5713 1.4433 0.7558 7 6 5.5996 1.4432 -0.6568 8 6 6.8031 1.4441 -1.5082 9 8 6.6913 1.4444 -2.7191 10 7 8.0273 1.4444 -0.9445 11 6 9.2233 1.4458 -1.7905 12 6 10.4728 1.4466 -0.9073 13 7 11.6720 1.4474 -1.7556 14 6 12.8938 1.4488 -0.9401 15 6 14.1005 1.4502 -1.8428 16 8 13.9568 1.4495 -3.0472 17 7 15.3392 1.4521 -1.3119 18 6 16.4370 1.4528 -2.1332 19 1 16.3091 1.4523 -3.2056 20 6 17.7141 1.4543 -1.5859 21 7 17.8698 1.4555 -0.2810 22 14 19.2099 1.4560 -2.7049 23 1 19.6047 2.8565 -3.0016 24 1 20.3333 0.7572 -2.0306 25 1 18.8807 0.7555 -3.9723 26 6 4.2890 1.4428 -1.0905 27 6 3.8238 1.4421 -2.5240 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 6.4325 1.4434 1.4076 36 1 8.1165 1.4445 0.0215 37 1 9.2237 0.5562 -2.4204 38 1 9.2227 2.3362 -2.4192 39 1 10.4720 2.3364 -0.2777 40 1 10.4736 0.5564 -0.2783 41 1 11.6629 2.2288 -2.3940 42 1 12.9099 2.3390 -0.3113 43 1 12.9115 0.5590 -0.3106 44 1 15.4541 1.4522 -0.3488 45 1 18.7613 1.4569 0.1011 46 1 3.7110 2.4696 -2.8699 47 1 4.5585 0.9286 -3.1441 48 1 2.8654 0.9276 -2.5947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135710207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:00 Heat of formation + Delta-G solvation = -37.572752 kcal Electronic energy + Delta-G solvation = -27335.372214 eV Core-core repulsion = 23232.270476 eV Total energy + Delta-G solvation = -4103.101738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.52441 -40.30194 -40.06071 -37.41337 -36.43521 -35.97275 -35.16340 -33.40574 -33.25154 -32.38009 -30.61448 -28.53724 -27.54989 -27.14956 -25.54790 -23.63930 -23.13326 -22.86264 -21.32547 -21.06388 -20.60044 -19.89825 -18.67486 -17.75463 -17.24922 -17.01903 -16.76781 -16.65963 -16.47157 -16.13615 -15.93224 -15.84692 -15.26283 -15.20596 -15.03694 -14.78533 -14.35046 -14.19341 -14.10365 -13.89871 -13.65507 -13.50292 -13.31758 -13.25094 -13.08612 -12.91824 -12.90807 -12.54726 -12.40864 -12.35716 -12.30636 -12.11158 -11.97253 -11.70266 -11.49482 -10.91985 -10.40625 -10.34407 -10.15572 -9.99977 -9.58943 -9.34851 -8.45545 -5.94050 0.47319 1.15090 1.33048 1.39139 1.43145 1.55759 2.06964 2.15668 2.32932 2.45919 3.07199 3.22123 3.44977 3.56064 3.61468 3.83036 3.86593 3.94202 4.00166 4.14915 4.17810 4.22469 4.34700 4.44707 4.49970 4.50823 4.54072 4.56018 4.61948 4.65125 4.76243 4.90491 4.96466 5.00611 5.09464 5.09808 5.12836 5.34106 5.41837 5.42465 5.46791 5.87378 5.88362 6.09410 6.36064 6.49598 6.61811 6.66454 7.14284 7.32549 7.57960 8.13730 8.71799 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042895 B = 0.001366 C = 0.001336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.598939 B =20497.471629 C =20955.303891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.357 5.357 5 N -0.323 5.323 6 C 0.088 3.912 7 C -0.322 4.322 8 C 0.593 3.407 9 O -0.585 6.585 10 N -0.711 5.711 11 C 0.132 3.868 12 C 0.058 3.942 13 N -0.685 5.685 14 C 0.068 3.932 15 C 0.435 3.565 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.156 3.844 27 C -0.098 4.098 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.218 0.782 36 H 0.414 0.586 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.346 0.654 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.134 0.406 7.361 35.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.136 5.136 5 N -0.141 5.141 6 C -0.099 4.099 7 C -0.337 4.337 8 C 0.382 3.618 9 O -0.467 6.467 10 N -0.364 5.364 11 C 0.008 3.992 12 C -0.071 4.071 13 N -0.318 5.318 14 C -0.064 4.064 15 C 0.222 3.778 16 O -0.512 6.512 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.210 4.210 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.199 1.199 26 C 0.022 3.978 27 C -0.156 4.156 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.234 0.766 36 H 0.251 0.749 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.164 0.836 42 H 0.091 0.909 43 H 0.127 0.873 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.105 0.895 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -36.081 -0.269 6.797 36.717 hybrid contribution 1.806 0.814 0.101 1.984 sum -34.275 0.544 6.898 34.967 Atomic orbital electron populations 1.21679 0.92513 1.03003 1.03171 1.21874 0.98089 0.94841 1.02585 1.22259 0.71838 0.99560 1.06431 1.48813 1.07736 1.54444 1.02652 1.77139 1.02432 1.25931 1.08627 1.24470 0.96039 0.95952 0.93460 1.19994 0.92695 1.26912 0.94126 1.17433 0.82874 0.74882 0.86608 1.90729 1.87213 1.52946 1.15813 1.45448 1.04430 1.75483 1.11008 1.21018 0.83134 1.01882 0.93205 1.22072 0.87519 1.02875 0.94618 1.59907 1.00485 1.51760 1.19682 1.21524 0.87298 1.03592 0.93994 1.20949 0.85207 0.82208 0.89389 1.90502 1.86623 1.56652 1.17385 1.41907 1.04504 1.65023 1.09484 1.19671 0.85207 1.50003 0.91646 0.90440 1.26000 1.01127 0.96229 0.97685 1.69661 1.25045 1.50305 1.11015 0.84952 0.77067 0.78650 0.77822 1.19610 1.19495 1.19906 1.21874 0.90188 0.93617 0.92112 1.20723 1.03179 1.04797 0.86883 0.90965 0.91821 0.91713 0.92513 0.91584 0.86220 0.87589 0.76557 0.74892 0.92331 0.92497 0.92468 0.88857 0.83558 0.90938 0.87307 0.76858 0.91289 0.88648 0.89539 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.91 71.98 0.71 0.23 16 2 C -0.14 -0.97 6.26 30.59 0.19 -0.77 16 3 C 0.12 0.92 6.03 86.38 0.52 1.44 16 4 N -0.36 -5.46 3.58 -333.00 -1.19 -6.66 16 5 N -0.32 -5.93 12.50 -56.27 -0.70 -6.63 16 6 C 0.09 1.41 11.50 85.65 0.99 2.40 16 7 C -0.32 -6.36 6.13 -20.15 -0.12 -6.48 16 8 C 0.59 13.99 7.81 86.66 0.68 14.67 16 9 O -0.59 -18.05 14.84 -4.04 -0.06 -18.11 16 10 N -0.71 -13.22 5.55 -466.37 -2.59 -15.80 16 11 C 0.13 2.98 5.93 86.38 0.51 3.49 16 12 C 0.06 1.20 5.80 86.31 0.50 1.70 16 13 N -0.69 -20.90 6.13 -517.94 -3.17 -24.07 16 14 C 0.07 2.23 6.17 85.56 0.53 2.75 16 15 C 0.43 20.60 7.82 87.66 0.69 21.29 16 16 O -0.63 -35.01 15.78 -3.06 -0.05 -35.06 16 17 N -0.57 -29.19 5.29 -306.99 -1.62 -30.81 16 18 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 21 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 22 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 C 0.16 2.72 7.01 42.14 0.30 3.02 16 27 C -0.10 -1.31 9.34 71.24 0.67 -0.64 16 28 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.12 0.36 7.62 -2.39 -0.02 0.34 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.22 1.77 7.50 -2.91 -0.02 1.75 16 36 H 0.41 4.80 7.43 -92.71 -0.69 4.11 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.35 11.28 8.43 -89.69 -0.76 10.52 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 1.62 6.50 -2.39 -0.02 1.60 16 48 H 0.10 0.71 7.70 -2.38 -0.02 0.69 16 Total: -1.00 -78.87 406.86 -0.82 -79.69 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -1.17 Total: 36.82 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 7.43 Total: 24.65 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -9.00 Total: -133.05 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -0.11 Total: -53.17 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -78.87 -0.82 -79.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135710207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.116 kcal (2) G-P(sol) polarization free energy of solvation -78.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds