Wall clock time and date at job start Tue Mar 31 2020 19:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34945 * 126.03782 * 2 1 4 4 C 1.35316 * 107.74357 * 180.02562 * 3 2 1 5 5 C 1.50709 * 126.03464 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47285 * 5.45627 * 5 4 3 7 7 C 1.52998 * 109.46968 * 125.45568 * 5 4 3 8 8 C 1.50701 * 109.46893 * 245.45126 * 5 4 3 9 9 O 1.21277 * 119.99992 * 5.58131 * 8 5 4 10 10 N 1.34776 * 119.99996 * 185.57068 * 8 5 4 11 11 C 1.46495 * 120.00292 * 180.02562 * 10 8 5 12 12 C 1.53002 * 109.47109 * 180.02562 * 11 10 8 13 13 N 1.46906 * 109.46855 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99786 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47004 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00230 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00137 * 179.97438 * 15 14 13 18 18 C 1.37099 * 120.00216 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99733 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99841 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00169 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99719 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47128 * 60.00041 * 22 20 18 24 24 H 1.48496 * 109.47161 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47128 * 300.00251 * 22 20 18 26 26 C 1.39859 * 107.92239 * 359.97438 * 4 3 2 27 27 N 1.30837 * 108.20684 * 0.26589 * 26 4 3 28 28 H 1.09001 * 109.47285 * 90.00611 * 1 2 3 29 29 H 1.08999 * 109.47396 * 210.00185 * 1 2 3 30 30 H 1.08998 * 109.47340 * 330.00619 * 1 2 3 31 31 H 1.07999 * 126.12613 * 359.95944 * 3 2 1 32 32 H 1.08996 * 109.47200 * 59.99734 * 6 5 4 33 33 H 1.08998 * 109.46664 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.46647 * 299.99951 * 6 5 4 35 35 H 1.09003 * 109.47428 * 59.99559 * 7 5 4 36 36 H 1.08998 * 109.47469 * 179.97438 * 7 5 4 37 37 H 1.09005 * 109.47036 * 299.99948 * 7 5 4 38 38 H 0.97006 * 119.99936 * 0.02562 * 10 8 5 39 39 H 1.09000 * 109.46754 * 300.00432 * 11 10 8 40 40 H 1.08995 * 109.47083 * 60.00265 * 11 10 8 41 41 H 1.08996 * 109.46746 * 299.99452 * 12 11 10 42 42 H 1.08995 * 109.47412 * 59.99878 * 12 11 10 43 43 H 1.00901 * 111.00328 * 56.04407 * 13 12 11 44 44 H 1.09002 * 109.47015 * 299.99924 * 14 13 12 45 45 H 1.09003 * 109.47392 * 60.00240 * 14 13 12 46 46 H 0.97002 * 120.00174 * 0.02562 * 17 15 14 47 47 H 0.96998 * 120.00196 * 179.97438 * 21 20 18 48 48 H 1.08008 * 125.90028 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 4.7680 1.5453 -0.0002 6 6 4.3450 3.0092 0.1380 7 6 5.6705 1.1621 1.1743 8 6 5.5200 1.3595 -1.2929 9 8 5.0521 0.6682 -2.1727 10 7 6.7124 1.9618 -1.4715 11 6 7.4432 1.7817 -2.7283 12 6 8.7561 2.5653 -2.6716 13 7 9.4886 2.3851 -3.9322 14 6 10.7573 3.1255 -3.9142 15 6 11.4793 2.9167 -5.2204 16 8 10.9858 2.2193 -6.0814 17 7 12.6734 3.5048 -5.4320 18 6 13.3304 3.3144 -6.6201 19 1 12.8909 2.6934 -7.3867 20 6 14.5612 3.9212 -6.8383 21 7 15.0957 4.6771 -5.9057 22 14 15.4562 3.6624 -8.4574 23 1 14.6105 4.1544 -9.5746 24 1 16.7383 4.4112 -8.4395 25 1 15.7313 2.2152 -8.6451 26 6 3.5346 -0.7321 -0.0003 27 7 2.2891 -1.1328 -0.0054 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.9281 2.1193 -0.0006 32 1 3.8012 3.1434 1.0730 33 1 5.2306 3.6446 0.1387 34 1 3.7021 3.2821 -0.6988 35 1 5.9718 0.1192 1.0759 36 1 6.5562 1.7973 1.1743 37 1 5.1266 1.2964 2.1093 38 1 7.0868 2.5146 -0.7677 39 1 7.6582 0.7232 -2.8750 40 1 6.8368 2.1476 -3.5568 41 1 8.5414 3.6237 -2.5247 42 1 9.3624 2.1991 -1.8431 43 1 8.9224 2.6577 -4.7216 44 1 10.5561 4.1878 -3.7756 45 1 11.3779 2.7632 -3.0946 46 1 13.0683 4.0622 -4.7433 47 1 15.9551 5.1004 -6.0578 48 1 4.4054 -1.3711 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136103981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:26 Heat of formation + Delta-G solvation = 5.088727 kcal Electronic energy + Delta-G solvation = -27940.912430 eV Core-core repulsion = 23839.660632 eV Total energy + Delta-G solvation = -4101.251798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.70564 -39.90589 -38.31740 -36.38065 -35.68691 -34.32482 -33.73191 -33.16183 -31.23485 -30.02788 -29.11517 -27.83825 -26.84657 -26.08800 -24.24321 -23.43581 -22.15212 -21.30637 -21.04999 -19.43237 -19.25109 -17.92942 -17.64513 -16.76373 -16.17457 -16.09668 -15.85381 -15.63707 -15.20406 -14.76446 -14.52179 -14.47604 -14.30400 -14.05471 -13.90299 -13.45561 -13.32774 -13.17401 -13.12876 -12.98573 -12.81908 -12.59056 -12.50865 -12.33644 -12.01173 -11.85560 -11.52000 -11.49297 -11.42551 -11.35878 -11.00647 -10.73272 -10.43736 -10.21281 -9.83213 -9.63692 -9.50004 -9.16483 -8.65911 -8.49567 -8.11885 -7.96366 -6.41725 -3.82545 1.62086 2.24426 2.48303 2.55694 3.08372 3.20849 3.26445 3.31313 3.90347 4.11868 4.12878 4.31171 4.43435 4.46097 4.54042 4.64325 4.73644 4.75740 4.90642 4.97914 5.00650 5.05684 5.15620 5.19172 5.26496 5.31345 5.36251 5.40118 5.41959 5.51799 5.68402 5.72460 5.73625 5.87403 5.89642 5.93166 5.97463 6.22962 6.30806 6.37928 6.70942 7.11458 7.36606 7.45293 7.55287 7.58160 8.05997 8.13511 8.61109 9.17852 9.53843 10.05412 10.75911 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035255 B = 0.001492 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.015984 B =18762.070920 C =19135.339303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.062 3.938 4 C -0.209 4.209 5 C 0.000 4.000 6 C -0.141 4.141 7 C -0.138 4.138 8 C 0.520 3.480 9 O -0.526 6.526 10 N -0.729 5.729 11 C 0.120 3.880 12 C 0.050 3.950 13 N -0.666 5.666 14 C 0.053 3.947 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.075 3.925 27 N -0.299 5.299 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.398 0.602 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.352 0.648 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.095 -0.635 20.608 32.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.161 5.161 3 C -0.084 4.084 4 C -0.221 4.221 5 C -0.005 4.005 6 C -0.199 4.199 7 C -0.195 4.195 8 C 0.306 3.694 9 O -0.401 6.401 10 N -0.382 5.382 11 C -0.003 4.003 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.112 4.112 27 N -0.120 5.120 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.189 0.811 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.232 0.768 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.172 0.828 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -26.260 -3.114 19.539 32.879 hybrid contribution 1.230 2.241 -0.188 2.563 sum -25.030 -0.873 19.351 31.650 Atomic orbital electron populations 1.21832 0.74301 1.04321 1.03413 1.48383 1.06542 1.03876 1.57272 1.22216 0.90706 0.93270 1.02251 1.19354 0.92772 0.93508 1.16502 1.18997 0.92518 0.95599 0.93352 1.21886 1.02326 0.92933 1.02754 1.21874 0.98544 1.02301 0.96811 1.20497 0.80758 0.79279 0.88915 1.90733 1.67363 1.38107 1.43907 1.45926 1.21063 1.52206 1.18964 1.21264 0.91574 1.01838 0.85672 1.22080 0.93995 0.97562 0.94387 1.59937 1.05507 1.60869 1.03559 1.21666 0.91774 0.95917 0.98647 1.19785 0.83624 0.85161 0.88941 1.90536 1.67718 1.42133 1.46214 1.41846 1.17049 1.43996 1.17073 1.19671 1.00941 1.28649 0.93756 0.87940 1.25254 0.97019 0.96337 0.99245 1.69599 1.18980 1.31941 1.33830 0.85912 0.78268 0.78570 0.81442 1.19915 1.20979 1.19862 1.23615 0.95005 0.94376 0.98158 1.77375 1.01615 1.08107 1.24907 0.90787 0.89339 0.89574 0.81115 0.91130 0.91607 0.91932 0.91801 0.91870 0.91263 0.76787 0.90245 0.91509 0.95003 0.90476 0.82828 0.93746 0.89469 0.77459 0.91826 0.80509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.47 59.85 0.69 1.17 16 2 N -0.38 -3.45 4.01 -68.16 -0.27 -3.72 16 3 C 0.06 0.50 10.45 -17.22 -0.18 0.32 16 4 C -0.21 -1.98 4.14 -105.05 -0.44 -2.42 16 5 C 0.00 0.00 0.81 -156.81 -0.13 -0.13 16 6 C -0.14 -0.73 7.37 37.16 0.27 -0.46 16 7 C -0.14 -0.78 8.16 37.16 0.30 -0.48 16 8 C 0.52 5.64 6.44 -10.99 -0.07 5.57 16 9 O -0.53 -8.20 15.71 5.56 0.09 -8.11 16 10 N -0.73 -6.56 5.39 -60.30 -0.32 -6.88 16 11 C 0.12 1.37 5.93 -4.04 -0.02 1.35 16 12 C 0.05 0.56 5.80 -3.82 -0.02 0.53 16 13 N -0.67 -10.49 6.13 -115.06 -0.70 -11.20 16 14 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 15 C 0.44 10.35 7.82 -10.99 -0.09 10.26 16 16 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 17 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 19 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 22 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.07 0.83 11.04 -17.37 -0.19 0.64 16 27 N -0.30 -3.58 12.58 30.62 0.39 -3.19 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.17 0.82 7.27 -52.49 -0.38 0.44 16 32 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 33 H 0.06 0.27 7.97 -51.93 -0.41 -0.15 16 34 H 0.06 0.36 7.74 -51.93 -0.40 -0.04 16 35 H 0.06 0.41 7.93 -51.93 -0.41 0.00 16 36 H 0.06 0.26 7.27 -51.93 -0.38 -0.12 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.40 2.40 7.39 -40.82 -0.30 2.10 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -37.08 404.52 -6.67 -43.75 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -7.52 Total: 11.80 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.14 Total: 9.20 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.25 Total: -62.95 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.17 Total: -23.94 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.08 -6.67 -43.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136103981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.838 kcal (2) G-P(sol) polarization free energy of solvation -37.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds