Wall clock time and date at job start Tue Mar 31 2020 20:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47659 * 2 1 4 4 N 1.46500 * 109.47488 * 120.00104 * 2 1 3 5 5 N 1.28443 * 125.18748 * 294.84249 * 4 2 1 6 6 C 1.30867 * 110.92891 * 179.97438 * 5 4 2 7 7 C 1.39673 * 107.85750 * 0.25450 * 6 5 4 8 8 C 1.36599 * 125.19314 * 114.83391 * 4 2 1 9 9 C 1.47165 * 126.88328 * 0.03673 * 8 4 2 10 10 O 1.21629 * 119.99668 * 4.94384 * 9 8 4 11 11 N 1.34776 * 119.99774 * 184.93891 * 9 8 4 12 12 C 1.46500 * 119.99735 * 185.10358 * 11 9 8 13 13 C 1.53003 * 109.47194 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47376 * 180.02562 * 13 12 11 15 15 N 1.46897 * 109.47304 * 179.97438 * 14 13 12 16 16 C 1.46896 * 110.99864 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47145 * 180.02562 * 16 15 14 18 18 O 1.21296 * 119.99608 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00281 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00156 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99522 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00148 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00063 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99880 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47169 * 89.99711 * 24 22 20 26 26 H 1.48495 * 109.47376 * 209.99921 * 24 22 20 27 27 H 1.48504 * 109.47211 * 329.99751 * 24 22 20 28 28 H 1.09007 * 109.46722 * 300.00193 * 1 2 3 29 29 H 1.08998 * 109.47065 * 59.99486 * 1 2 3 30 30 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47406 * 239.99699 * 2 1 3 32 32 H 1.09007 * 109.47205 * 300.00229 * 3 2 1 33 33 H 1.09001 * 109.47403 * 59.99714 * 3 2 1 34 34 H 1.08994 * 109.47940 * 180.02562 * 3 2 1 35 35 H 1.08001 * 126.07322 * 179.97438 * 6 5 4 36 36 H 1.08005 * 127.32098 * 179.70103 * 7 6 5 37 37 H 0.97002 * 120.00401 * 5.10461 * 11 9 8 38 38 H 1.09000 * 109.47333 * 300.00216 * 12 11 9 39 39 H 1.08994 * 109.47062 * 60.00287 * 12 11 9 40 40 H 1.09007 * 109.46520 * 299.99716 * 13 12 11 41 41 H 1.08999 * 109.47101 * 59.99195 * 13 12 11 42 42 H 1.09000 * 109.46609 * 299.99893 * 14 13 12 43 43 H 1.08999 * 109.47390 * 59.99144 * 14 13 12 44 44 H 1.00905 * 110.99679 * 56.04553 * 15 14 13 45 45 H 1.09000 * 109.47808 * 300.00276 * 16 15 14 46 46 H 1.09006 * 109.46822 * 60.00462 * 16 15 14 47 47 H 0.97004 * 119.99477 * 0.02562 * 19 17 16 48 48 H 0.97000 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.8494 -0.2881 2.4041 6 6 2.3995 -1.1170 3.2543 7 6 2.9855 -2.1534 2.5240 8 6 2.7229 -1.8609 1.1970 9 6 3.1270 -2.6495 0.0220 10 8 2.9112 -2.2264 -1.0978 11 7 3.7362 -3.8403 0.1868 12 6 4.2387 -4.5734 -0.9779 13 6 4.8804 -5.8839 -0.5178 14 6 5.4057 -6.6492 -1.7340 15 7 6.0223 -7.9072 -1.2921 16 6 6.5386 -8.6706 -2.4360 17 6 7.1618 -9.9518 -1.9448 18 8 7.1749 -10.2038 -0.7584 19 7 7.7054 -10.8170 -2.8236 20 6 8.2728 -11.9823 -2.3767 21 1 8.2844 -12.2067 -1.3203 22 6 8.8328 -12.8746 -3.2828 23 7 9.3770 -13.9912 -2.8543 24 14 8.8132 -12.4860 -5.1098 25 1 10.0426 -11.7347 -5.4693 26 1 8.7622 -13.7518 -5.8846 27 1 7.6190 -11.6626 -5.4280 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 2.4038 -1.0153 4.3295 36 1 3.5273 -3.0032 2.9124 37 1 3.8420 -4.2121 1.0764 38 1 3.4122 -4.7918 -1.6541 39 1 4.9815 -3.9670 -1.4961 40 1 5.7069 -5.6658 0.1586 41 1 4.1372 -6.4901 0.0003 42 1 4.5794 -6.8672 -2.4107 43 1 6.1489 -6.0428 -2.2517 44 1 5.3716 -8.4591 -0.7535 45 1 5.7200 -8.9030 -3.1172 46 1 7.2894 -8.0781 -2.9591 47 1 7.6959 -10.6148 -3.7723 48 1 9.7683 -14.6140 -3.4868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158864403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:48 Heat of formation + Delta-G solvation = 3.363193 kcal Electronic energy + Delta-G solvation = -27495.143813 eV Core-core repulsion = 23393.817191 eV Total energy + Delta-G solvation = -4101.326622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.97020 -39.82411 -38.53023 -36.78316 -36.17009 -35.01049 -33.92756 -32.17188 -31.66673 -30.80369 -30.66381 -27.81496 -27.41653 -25.22426 -23.87787 -23.29314 -22.81913 -21.88098 -21.22805 -20.00362 -19.38403 -18.42524 -18.16840 -16.74074 -16.54999 -16.30451 -16.08537 -15.78973 -15.40370 -15.24751 -14.93154 -14.86025 -14.39501 -14.37029 -14.20863 -13.68108 -13.47539 -13.45569 -13.23130 -12.96549 -12.73788 -12.66845 -12.40569 -12.20798 -11.98836 -11.89595 -11.85561 -11.69225 -11.56616 -11.22005 -11.16780 -11.07207 -10.60979 -10.34481 -9.99176 -9.72843 -9.59038 -9.49075 -9.38023 -8.62934 -8.22778 -8.17895 -6.32688 -3.84254 0.84405 1.91849 2.24004 2.74037 2.79303 3.01157 3.05854 3.14052 3.71784 4.00746 4.01520 4.09076 4.12791 4.38481 4.48080 4.67187 4.69151 4.71451 4.74440 4.92025 4.96959 5.03467 5.08371 5.14667 5.20057 5.20916 5.27940 5.31951 5.33833 5.38437 5.49061 5.59414 5.61357 5.65330 5.77507 5.82604 5.88684 5.92084 5.99362 6.11212 6.36864 6.94559 7.02643 7.51266 7.56534 7.61915 7.72196 8.12709 8.57968 8.93223 9.40694 9.80676 10.80399 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031672 B = 0.001417 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.852102 B =19755.960671 C =20421.748662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 C -0.158 4.158 4 N -0.248 5.248 5 N -0.273 5.273 6 C -0.006 4.006 7 C -0.187 4.187 8 C -0.043 4.043 9 C 0.592 3.408 10 O -0.542 6.542 11 N -0.711 5.711 12 C 0.122 3.878 13 C -0.131 4.131 14 C 0.063 3.937 15 N -0.669 5.669 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.186 0.814 36 H 0.161 0.839 37 H 0.406 0.594 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.351 0.649 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.371 0.629 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 29.202 4.538 33.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 C -0.216 4.216 4 N -0.036 5.036 5 N -0.106 5.106 6 C -0.181 4.181 7 C -0.217 4.217 8 C -0.171 4.171 9 C 0.378 3.622 10 O -0.420 6.420 11 N -0.362 5.362 12 C -0.001 4.001 13 C -0.169 4.169 14 C -0.067 4.067 15 N -0.302 5.302 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.229 5.229 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.203 0.797 36 H 0.179 0.821 37 H 0.242 0.758 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.170 0.830 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.849 30.470 4.413 35.096 hybrid contribution -0.169 -1.192 -1.336 1.798 sum -17.017 29.277 3.077 34.003 Atomic orbital electron populations 1.22132 0.92825 1.03136 1.03633 1.22148 0.96025 0.94718 0.84582 1.22094 1.01958 0.93857 1.03666 1.46038 1.36683 1.15245 1.05678 1.73146 1.21700 1.25857 0.89850 1.23594 1.01176 0.93324 1.00035 1.22295 1.06023 1.02646 0.90696 1.21377 1.06728 0.93359 0.95666 1.16911 0.77558 0.80960 0.86756 1.90733 1.55737 1.70309 1.25192 1.45665 1.59186 1.19818 1.11573 1.21408 0.98870 0.92452 0.87404 1.21756 1.01166 0.94616 0.99344 1.21820 0.97437 0.91954 0.95525 1.60045 1.42131 1.05954 1.22039 1.21706 0.99342 0.94769 0.92663 1.19707 0.84352 0.85430 0.87030 1.90564 1.61226 1.76877 1.16054 1.42206 1.53504 1.19677 1.07562 1.19438 1.33060 0.93873 0.97120 0.86272 1.25037 0.97021 0.95545 0.98511 1.69618 1.37668 1.09646 1.35144 0.86667 0.78699 0.78761 0.85218 1.19580 1.20180 1.19534 0.91213 0.90102 0.91998 0.84603 0.90185 0.91019 0.91957 0.79656 0.82118 0.75834 0.90982 0.90845 0.89852 0.90996 0.95150 0.90695 0.82971 0.93691 0.89397 0.79670 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.45 37.16 0.35 -0.68 16 2 C 0.12 1.00 3.55 -67.93 -0.24 0.76 16 3 C -0.16 -1.02 9.30 37.15 0.35 -0.68 16 4 N -0.25 -2.35 3.09 -50.69 -0.16 -2.51 16 5 N -0.27 -2.60 11.52 30.59 0.35 -2.25 16 6 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 7 C -0.19 -1.36 10.50 -38.98 -0.41 -1.76 16 8 C -0.04 -0.40 6.96 -82.06 -0.57 -0.97 16 9 C 0.59 5.80 7.79 -12.64 -0.10 5.70 16 10 O -0.54 -6.66 14.39 5.25 0.08 -6.58 16 11 N -0.71 -5.29 5.53 -61.47 -0.34 -5.63 16 12 C 0.12 0.94 5.68 -4.04 -0.02 0.92 16 13 C -0.13 -1.03 5.59 -26.73 -0.15 -1.18 16 14 C 0.06 0.63 5.68 -3.83 -0.02 0.61 16 15 N -0.67 -9.62 6.13 -115.06 -0.70 -10.32 16 16 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 17 C 0.45 10.02 7.82 -10.98 -0.09 9.94 16 18 O -0.57 -14.97 15.78 5.54 0.09 -14.88 16 19 N -0.59 -13.90 5.09 -10.96 -0.06 -13.95 16 20 C -0.31 -8.61 10.16 -14.93 -0.15 -8.77 16 21 H 0.12 3.83 7.39 -52.48 -0.39 3.45 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 24 Si 0.88 19.19 27.74 -169.99 -4.71 14.47 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 28 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.14 1.25 5.32 -51.93 -0.28 0.97 16 32 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.16 0.69 7.62 -52.48 -0.40 0.29 16 37 H 0.41 2.12 7.55 -40.82 -0.31 1.81 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.35 5.19 8.43 -39.29 -0.33 4.86 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 48 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 402.53 15.07 6.07 6.07 Total: -1.00 -35.38 402.53 -7.45 -42.84 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.45 Total: 12.15 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.39 Total: 5.41 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.13 Total: -59.47 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.16 Total: -21.46 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.38 -7.45 -42.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158864403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.199 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds