Wall clock time and date at job start Tue Mar 31 2020 20:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47343 * 2 1 4 4 N 1.46496 * 109.47021 * 180.02562 * 3 2 1 5 5 C 1.34823 * 126.59281 * 125.29562 * 4 3 2 6 6 C 1.36595 * 106.83458 * 180.08805 * 5 4 3 7 7 C 1.47529 * 125.76889 * 179.89520 * 6 5 4 8 8 O 1.21591 * 119.99802 * 6.71158 * 7 6 5 9 9 N 1.34768 * 119.99893 * 186.43692 * 7 6 5 10 10 C 1.47512 * 118.75412 * 177.21480 * 9 7 6 11 11 C 1.53951 * 110.82022 * 138.25692 * 10 9 7 12 12 C 1.51542 * 109.72633 * 320.30043 * 11 10 9 13 13 O 1.42151 * 108.76271 * 91.29708 * 12 11 10 14 14 C 1.38017 * 119.43667 * 272.78127 * 13 12 11 15 15 H 1.09000 * 109.47031 * 303.42788 * 14 13 12 16 16 C 1.53003 * 109.46514 * 183.43321 * 14 13 12 17 17 N 1.46499 * 109.46933 * 64.99241 * 16 14 13 18 18 C 1.36945 * 119.99670 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99710 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00077 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99559 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00174 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47001 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47221 * 120.00014 * 22 20 18 25 25 H 1.48504 * 109.46756 * 239.99755 * 22 20 18 26 26 C 1.45125 * 118.76053 * 357.48139 * 9 7 6 27 27 N 1.34406 * 108.46250 * 359.63404 * 6 5 4 28 28 N 1.28765 * 109.51892 * 0.22481 * 27 6 5 29 29 H 1.09001 * 109.47447 * 59.99476 * 1 2 3 30 30 H 1.08999 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46802 * 299.99690 * 1 2 3 32 32 H 1.09009 * 109.46802 * 240.00310 * 2 1 3 33 33 H 1.08992 * 109.47291 * 120.00438 * 2 1 3 34 34 H 1.09000 * 109.46678 * 60.00316 * 3 2 1 35 35 H 1.09003 * 109.46840 * 300.00333 * 3 2 1 36 36 H 1.07991 * 126.58295 * 359.94983 * 5 4 3 37 37 H 1.09004 * 109.16228 * 258.76540 * 10 9 7 38 38 H 1.08993 * 109.16650 * 17.96800 * 10 9 7 39 39 H 1.09004 * 109.45964 * 200.17672 * 11 10 9 40 40 H 1.08990 * 109.28469 * 80.31891 * 11 10 9 41 41 H 1.09002 * 109.58578 * 331.51248 * 12 11 10 42 42 H 1.08994 * 109.58942 * 211.08553 * 12 11 10 43 43 H 1.09003 * 109.46774 * 184.99024 * 16 14 13 44 44 H 1.09002 * 109.47324 * 304.98742 * 16 14 13 45 45 H 0.96994 * 120.00227 * 359.97438 * 17 16 14 46 46 H 0.97004 * 119.99765 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.45934 * 29.30896 * 26 9 7 48 48 H 1.09000 * 109.46038 * 149.27459 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3084 2.0680 -0.8844 6 6 5.5940 1.7994 -0.5092 7 6 6.8100 2.2795 -1.1929 8 8 6.7191 3.0765 -2.1067 9 7 8.0218 1.8390 -0.8009 10 6 9.2146 2.2886 -1.5434 11 6 10.3648 2.6271 -0.5778 12 6 9.8152 3.3345 0.6445 13 8 9.5125 2.3632 1.6373 14 6 8.2740 1.7540 1.6350 15 1 7.4950 2.5143 1.6910 16 6 8.1629 0.8201 2.8418 17 7 8.2046 1.6093 4.0754 18 6 8.1202 0.9844 5.2911 19 1 8.0226 -0.0901 5.3403 20 6 8.1602 1.7320 6.4599 21 7 8.2797 3.0415 6.3998 22 14 8.0459 0.8797 8.1182 23 1 7.9190 -0.5857 7.9138 24 1 9.2710 1.1657 8.9072 25 1 6.8563 1.3817 8.8517 26 6 8.1036 0.9357 0.3319 27 7 5.5641 1.0285 0.5914 28 7 4.3412 0.7970 0.9214 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9955 2.6647 -1.7283 37 1 9.5332 1.4970 -2.2217 38 1 8.9614 3.1757 -2.1239 39 1 11.0821 3.2758 -1.0807 40 1 10.8607 1.7061 -0.2718 41 1 8.9089 3.8772 0.3758 42 1 10.5600 4.0308 1.0295 43 1 7.2215 0.2728 2.7922 44 1 8.9940 0.1149 2.8333 45 1 8.2919 2.5743 4.0311 46 1 8.3073 3.5640 7.2166 47 1 7.1900 0.3442 0.3914 48 1 8.9585 0.2714 0.2058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201726439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:08 Heat of formation + Delta-G solvation = 49.120507 kcal Electronic energy + Delta-G solvation = -30445.308854 eV Core-core repulsion = 26345.966418 eV Total energy + Delta-G solvation = -4099.342436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36945 -40.20103 -38.34373 -36.31366 -35.28331 -34.61083 -33.17216 -32.67186 -31.11897 -30.59259 -28.57713 -27.57836 -26.43645 -25.15422 -23.63827 -23.06402 -22.42656 -21.76604 -21.08350 -20.79251 -19.51112 -17.71773 -17.10577 -16.77454 -16.47939 -16.42143 -16.11726 -15.61285 -15.27666 -14.89268 -14.76370 -14.60506 -14.18162 -13.97554 -13.66215 -13.41621 -13.09481 -13.03683 -12.91565 -12.59784 -12.47889 -12.24802 -12.15397 -12.06094 -11.85967 -11.74607 -11.31786 -11.21039 -10.83777 -10.74369 -10.72513 -10.58578 -10.42807 -10.23895 -9.95148 -9.82633 -9.58160 -9.37330 -9.24333 -8.72911 -8.41016 -6.72399 -5.60051 -2.86890 1.03102 1.66575 1.87134 2.91007 3.20893 3.53045 3.58015 3.60781 3.96279 4.07859 4.13973 4.29408 4.42989 4.61868 4.72108 4.75053 4.80346 4.87350 4.91742 4.97773 5.11288 5.19251 5.23918 5.31031 5.40324 5.47800 5.50660 5.55231 5.62211 5.71174 5.73044 5.74292 5.77051 5.84347 6.01303 6.16911 6.20390 6.26270 6.35620 6.49027 6.55670 6.90589 6.95327 7.27997 7.84624 7.85879 8.09637 8.18649 8.58612 9.69830 10.30367 10.66012 11.63281 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007540 B = 0.004231 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3712.787905 B = 6616.801733 C = 9808.453790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.361 5.361 5 C 0.091 3.909 6 C -0.105 4.105 7 C 0.601 3.399 8 O -0.548 6.548 9 N -0.592 5.592 10 C 0.111 3.889 11 C -0.164 4.164 12 C 0.074 3.926 13 O -0.371 6.371 14 C 0.098 3.902 15 H 0.047 0.953 16 C 0.169 3.831 17 N -0.726 5.726 18 C -0.229 4.229 19 H 0.070 0.930 20 C -0.018 4.018 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.057 3.943 27 N -0.192 5.192 28 N -0.052 5.052 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.202 0.798 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.024 0.976 45 H 0.385 0.615 46 H 0.252 0.748 47 H 0.125 0.875 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.895 -2.894 -21.675 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C -0.001 4.001 4 N -0.145 5.145 5 C -0.066 4.066 6 C -0.243 4.243 7 C 0.387 3.613 8 O -0.426 6.426 9 N -0.323 5.323 10 C -0.011 4.011 11 C -0.203 4.203 12 C -0.003 4.003 13 O -0.289 6.289 14 C 0.038 3.962 15 H 0.064 0.936 16 C 0.041 3.959 17 N -0.370 5.370 18 C -0.361 4.361 19 H 0.088 0.912 20 C -0.213 4.213 21 N -0.584 5.584 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.221 1.221 26 C -0.067 4.067 27 N -0.065 5.065 28 N -0.032 5.032 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.219 0.781 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.219 0.781 46 H 0.062 0.938 47 H 0.142 0.858 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.804 -3.548 -20.660 23.583 hybrid contribution -0.364 0.659 -0.123 0.763 sum -11.168 -2.890 -20.784 23.771 Atomic orbital electron populations 1.21703 0.93896 1.02850 1.02319 1.21831 0.96918 0.94554 1.04330 1.22166 0.72607 1.00141 1.05171 1.50625 1.08862 1.35082 1.19954 1.23282 0.90105 0.97084 0.96166 1.21383 0.94322 1.09034 0.99603 1.16950 0.81998 0.80310 0.82002 1.90760 1.86470 1.34610 1.30712 1.47734 1.05671 1.47055 1.31848 1.21952 0.84373 1.00882 0.93889 1.22556 0.97717 1.02735 0.97271 1.22094 0.99557 0.90673 0.87994 1.86426 1.34674 1.55462 1.52353 1.22170 0.85181 0.94614 0.94250 0.93559 1.20598 0.98496 0.92474 0.84342 1.42239 1.88477 1.06375 0.99914 1.19292 1.41111 0.91760 0.83894 0.91161 1.24707 1.03537 0.95483 0.97561 1.69697 1.58062 1.04050 1.26554 0.86135 0.77051 0.78460 0.84720 1.20584 1.22032 1.22109 1.23199 1.05625 0.92958 0.84964 1.74789 1.12035 1.10190 1.09513 1.82138 0.93588 1.16803 1.10674 0.92354 0.91649 0.91970 0.91132 0.89744 0.88146 0.87849 0.78148 0.91546 0.89055 0.89786 0.90090 0.93550 0.89389 0.94005 0.95856 0.78115 0.93827 0.85763 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.14 -0.83 6.14 -26.73 -0.16 -1.00 16 3 C 0.12 0.74 6.54 -4.04 -0.03 0.71 16 4 N -0.36 -3.79 3.69 -61.06 -0.23 -4.02 16 5 C 0.09 0.97 11.28 -16.83 -0.19 0.78 16 6 C -0.10 -1.48 6.66 -83.55 -0.56 -2.04 16 7 C 0.60 9.01 7.63 -12.48 -0.10 8.91 16 8 O -0.55 -8.86 16.16 5.29 0.09 -8.78 16 9 N -0.59 -8.43 2.18 -173.46 -0.38 -8.80 16 10 C 0.11 1.32 6.21 -2.99 -0.02 1.30 16 11 C -0.16 -1.92 5.79 -26.97 -0.16 -2.08 16 12 C 0.07 1.11 6.38 36.42 0.23 1.34 16 13 O -0.37 -7.12 9.38 -26.54 -0.25 -7.37 16 14 C 0.10 1.85 2.21 -25.78 -0.06 1.79 16 15 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16 16 C 0.17 3.74 5.92 -4.04 -0.02 3.72 16 17 N -0.73 -19.97 5.54 -59.90 -0.33 -20.30 16 18 C -0.23 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 21 N -0.93 -29.71 13.06 55.49 0.72 -28.99 16 22 Si 0.90 23.36 29.55 -169.99 -5.02 18.33 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 C 0.06 0.87 4.45 -3.83 -0.02 0.85 16 27 N -0.19 -3.01 8.10 32.85 0.27 -2.74 16 28 N -0.05 -0.77 13.65 60.35 0.82 0.06 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.32 8.08 -51.93 -0.42 -0.10 16 36 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.11 6.96 -51.93 -0.36 0.75 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.99 8.01 -51.93 -0.42 0.57 16 41 H 0.05 0.73 7.41 -51.93 -0.38 0.35 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.39 11.34 7.65 -40.82 -0.31 11.03 16 46 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.13 1.93 4.66 -58.17 -0.27 1.66 16 48 H 0.08 1.14 8.11 -51.93 -0.42 0.71 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -36.80 389.86 -7.00 -43.80 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.62 Total: 6.46 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.95 Total: 6.47 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 0.88 Total: -64.79 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.16 Total: -16.14 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.80 -7.00 -43.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201726439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.923 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds