Wall clock time and date at job start Tue Mar 31 2020 20:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46699 * 2 1 4 4 N 1.46496 * 109.47684 * 119.99878 * 2 1 3 5 5 C 1.34823 * 126.59281 * 275.29767 * 4 2 1 6 6 C 1.36595 * 106.83458 * 180.08805 * 5 4 2 7 7 C 1.47529 * 125.76889 * 179.89520 * 6 5 4 8 8 O 1.21591 * 119.99802 * 6.71158 * 7 6 5 9 9 N 1.34768 * 119.99893 * 186.43692 * 7 6 5 10 10 C 1.47512 * 118.75412 * 177.21480 * 9 7 6 11 11 C 1.53951 * 110.82022 * 138.25692 * 10 9 7 12 12 C 1.51542 * 109.72633 * 320.30043 * 11 10 9 13 13 O 1.42151 * 108.76271 * 91.29708 * 12 11 10 14 14 C 1.38017 * 119.43667 * 272.78127 * 13 12 11 15 15 H 1.09000 * 109.47031 * 303.42788 * 14 13 12 16 16 C 1.53003 * 109.46514 * 183.43321 * 14 13 12 17 17 N 1.46499 * 109.46933 * 64.99241 * 16 14 13 18 18 C 1.36945 * 119.99670 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99710 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00077 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99559 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00174 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47001 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47221 * 120.00014 * 22 20 18 25 25 H 1.48504 * 109.46756 * 239.99755 * 22 20 18 26 26 C 1.45125 * 118.76053 * 357.48139 * 9 7 6 27 27 N 1.34406 * 108.46250 * 359.63404 * 6 5 4 28 28 N 1.28765 * 109.51892 * 0.22481 * 27 6 5 29 29 H 1.08999 * 109.47576 * 59.99909 * 1 2 3 30 30 H 1.09006 * 109.47194 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47166 * 299.99699 * 1 2 3 32 32 H 1.09002 * 109.47166 * 240.00300 * 2 1 3 33 33 H 1.09003 * 109.47050 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47277 * 299.99700 * 3 2 1 35 35 H 1.08991 * 109.47523 * 60.00211 * 3 2 1 36 36 H 1.07991 * 126.58295 * 359.94983 * 5 4 2 37 37 H 1.09004 * 109.16228 * 258.76540 * 10 9 7 38 38 H 1.08993 * 109.16650 * 17.96800 * 10 9 7 39 39 H 1.09004 * 109.45964 * 200.17672 * 11 10 9 40 40 H 1.08990 * 109.28469 * 80.31891 * 11 10 9 41 41 H 1.09002 * 109.58578 * 331.51248 * 12 11 10 42 42 H 1.08994 * 109.58942 * 211.08553 * 12 11 10 43 43 H 1.09003 * 109.46774 * 184.99024 * 16 14 13 44 44 H 1.09002 * 109.47324 * 304.98742 * 16 14 13 45 45 H 0.96994 * 120.00227 * 359.97438 * 17 16 14 46 46 H 0.97004 * 119.99765 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.45934 * 29.30896 * 26 9 7 48 48 H 1.09000 * 109.46038 * 149.27459 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1921 -0.1526 2.4201 6 6 2.6628 -1.1491 3.2270 7 6 2.9984 -1.0145 4.6573 8 8 2.7484 0.0199 5.2456 9 7 3.5770 -2.0399 5.3131 10 6 3.9575 -1.8541 6.7262 11 6 3.6090 -3.1034 7.5555 12 6 2.2719 -3.6582 7.1074 13 8 2.4957 -4.6230 6.0877 14 6 2.5816 -4.2128 4.7727 15 1 1.6748 -3.6725 4.5008 16 6 2.7379 -5.4355 3.8664 17 7 1.5257 -6.2550 3.9386 18 6 1.4344 -7.4085 3.2061 19 1 2.2559 -7.7137 2.5749 20 6 0.2860 -8.1853 3.2749 21 7 -0.7148 -7.8134 4.0446 22 14 0.1618 -9.7590 2.2763 23 1 1.4122 -9.9520 1.4989 24 1 -0.0357 -10.9117 3.1915 25 1 -0.9904 -9.6640 1.3442 26 6 3.8074 -3.2831 4.6009 27 7 2.7632 -2.2746 2.4991 28 7 2.3891 -2.0395 1.2896 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.9987 0.8704 2.7069 37 1 5.0298 -1.6678 6.7864 38 1 3.4226 -0.9949 7.1308 39 1 3.5555 -2.8354 8.6107 40 1 4.3818 -3.8582 7.4114 41 1 1.6535 -2.8501 6.7165 42 1 1.7699 -4.1292 7.9524 43 1 2.8944 -5.1082 2.8385 44 1 3.5945 -6.0241 4.1947 45 1 0.7878 -5.9806 4.5052 46 1 -1.5175 -8.3561 4.0924 47 1 3.9579 -3.0725 3.5421 48 1 4.6941 -3.7731 5.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201733373.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:16 Heat of formation + Delta-G solvation = 52.545891 kcal Electronic energy + Delta-G solvation = -30758.092116 eV Core-core repulsion = 26658.898215 eV Total energy + Delta-G solvation = -4099.193901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.39571 -40.20736 -38.34116 -36.78219 -35.27430 -34.59954 -33.02796 -31.67273 -31.10652 -30.53058 -28.57487 -27.89917 -26.67518 -25.21730 -24.28135 -23.47825 -22.41524 -21.23178 -21.03050 -20.79222 -19.55931 -17.69344 -17.10488 -16.77234 -16.41995 -16.26865 -16.04623 -15.49462 -15.14389 -14.84843 -14.73097 -14.53379 -14.19080 -13.88289 -13.54118 -13.35603 -13.16127 -13.00093 -12.92082 -12.84781 -12.51097 -12.25970 -12.13837 -12.10465 -11.99090 -11.74170 -11.60857 -11.22350 -10.83373 -10.73112 -10.71681 -10.57877 -10.43928 -10.23307 -9.94753 -9.82056 -9.57931 -9.36281 -9.23836 -8.72691 -8.40351 -6.72145 -5.59864 -2.86670 1.05134 1.68089 1.85633 2.91553 3.22176 3.53162 3.58164 3.60919 3.91580 4.09124 4.14423 4.27317 4.41702 4.47802 4.72176 4.75468 4.86467 4.91947 4.96789 4.99379 5.09272 5.14038 5.20015 5.27580 5.33429 5.40914 5.47417 5.55608 5.59079 5.66424 5.71730 5.73718 5.77380 5.84770 6.01664 6.17315 6.24176 6.27036 6.36769 6.49418 6.56486 6.91096 6.95730 7.28796 7.84876 7.87729 8.10775 8.19161 8.58806 9.70032 10.30593 10.66265 11.63477 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008551 B = 0.004202 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3273.543772 B = 6662.456987 C = 9324.563373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.143 3.857 3 C -0.168 4.168 4 N -0.355 5.355 5 C 0.092 3.908 6 C -0.105 4.105 7 C 0.601 3.399 8 O -0.548 6.548 9 N -0.592 5.592 10 C 0.111 3.889 11 C -0.164 4.164 12 C 0.074 3.926 13 O -0.371 6.371 14 C 0.098 3.902 15 H 0.046 0.954 16 C 0.169 3.831 17 N -0.726 5.726 18 C -0.229 4.229 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.934 5.934 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.057 3.943 27 N -0.192 5.192 28 N -0.054 5.054 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.199 0.801 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.024 0.976 45 H 0.385 0.615 46 H 0.252 0.748 47 H 0.125 0.875 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 22.878 -3.245 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.042 3.958 3 C -0.226 4.226 4 N -0.141 5.141 5 C -0.065 4.065 6 C -0.244 4.244 7 C 0.387 3.613 8 O -0.426 6.426 9 N -0.323 5.323 10 C -0.011 4.011 11 C -0.203 4.203 12 C -0.003 4.003 13 O -0.289 6.289 14 C 0.038 3.962 15 H 0.064 0.936 16 C 0.041 3.959 17 N -0.370 5.370 18 C -0.360 4.360 19 H 0.088 0.912 20 C -0.213 4.213 21 N -0.584 5.584 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.221 1.221 26 C -0.067 4.067 27 N -0.066 5.066 28 N -0.034 5.034 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.216 0.784 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.219 0.781 46 H 0.062 0.938 47 H 0.142 0.858 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.257 21.789 -3.797 23.609 hybrid contribution -0.587 0.423 0.046 0.725 sum 7.670 22.213 -3.751 23.797 Atomic orbital electron populations 1.22272 0.92375 1.04317 1.03677 1.21646 0.95833 0.93237 0.85133 1.22260 1.02556 0.93457 1.04302 1.50817 1.44411 1.09871 1.08976 1.23151 0.97626 1.00972 0.84748 1.21371 1.15046 0.90932 0.97005 1.16955 0.77030 0.83410 0.83857 1.90758 1.55229 1.28923 1.67668 1.47732 1.59417 1.13394 1.11771 1.21950 1.00210 0.99247 0.79689 1.22556 1.00253 0.97632 0.99835 1.22094 0.94922 0.92204 0.91101 1.86425 1.91779 1.35951 1.14762 1.22169 0.95463 0.96078 0.82497 0.93567 1.20598 0.91454 0.89027 0.94833 1.42238 1.15189 1.25176 1.54395 1.19294 0.99908 0.98382 1.18464 0.91162 1.24705 0.96741 0.99261 1.00570 1.69697 1.06314 1.39622 1.42739 0.86136 0.77219 0.83674 0.79344 1.20584 1.22035 1.22114 1.23198 0.99689 0.83783 1.00074 1.74774 1.11125 1.22072 0.98588 1.82157 1.17085 0.91076 1.13049 0.89734 0.90803 0.91501 0.86664 0.91169 0.89327 0.91139 0.78409 0.91552 0.89061 0.89791 0.90092 0.93553 0.89394 0.93999 0.95856 0.78118 0.93833 0.85753 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 9.52 37.15 0.35 -0.71 16 2 C 0.14 0.95 3.96 -67.93 -0.27 0.68 16 3 C -0.17 -0.67 8.85 37.16 0.33 -0.34 16 4 N -0.36 -3.84 3.54 -54.57 -0.19 -4.03 16 5 C 0.09 1.01 10.41 -16.83 -0.18 0.84 16 6 C -0.11 -1.50 6.66 -83.55 -0.56 -2.06 16 7 C 0.60 9.08 7.63 -12.48 -0.10 8.99 16 8 O -0.55 -8.92 16.16 5.29 0.09 -8.83 16 9 N -0.59 -8.48 2.18 -173.46 -0.38 -8.86 16 10 C 0.11 1.33 6.21 -2.99 -0.02 1.31 16 11 C -0.16 -1.93 5.79 -26.97 -0.16 -2.09 16 12 C 0.07 1.11 6.38 36.42 0.23 1.35 16 13 O -0.37 -7.14 9.38 -26.54 -0.25 -7.39 16 14 C 0.10 1.86 2.21 -25.78 -0.06 1.80 16 15 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16 16 C 0.17 3.76 5.92 -4.04 -0.02 3.73 16 17 N -0.73 -20.00 5.54 -59.90 -0.33 -20.33 16 18 C -0.23 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 21 N -0.93 -29.73 13.06 55.49 0.72 -29.00 16 22 Si 0.90 23.38 29.55 -169.99 -5.02 18.35 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 C 0.06 0.87 4.45 -3.83 -0.02 0.86 16 27 N -0.19 -3.05 8.10 32.85 0.27 -2.78 16 28 N -0.05 -0.82 13.78 60.35 0.83 0.02 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.25 7.23 -51.93 -0.38 -0.12 16 36 H 0.20 1.54 7.35 -52.49 -0.39 1.15 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.12 6.96 -51.93 -0.36 0.76 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.99 8.01 -51.93 -0.42 0.57 16 41 H 0.05 0.73 7.41 -51.93 -0.38 0.35 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.39 11.35 7.65 -40.82 -0.31 11.04 16 46 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.13 1.95 4.66 -58.17 -0.27 1.68 16 48 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -36.74 387.16 -6.67 -43.41 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.54 Total: 6.81 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.70 Total: 6.80 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: 0.92 Total: -64.98 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.16 Total: -16.22 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.74 -6.67 -43.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201733373.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.955 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds