Wall clock time and date at job start Tue Mar 31 2020 20:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47101 * 2 1 4 4 N 1.46504 * 109.46986 * 119.99511 * 2 1 3 5 5 C 1.34811 * 126.59565 * 275.25864 * 4 2 1 6 6 C 1.36600 * 106.83469 * 180.16442 * 5 4 2 7 7 C 1.47532 * 125.76506 * 179.89481 * 6 5 4 8 8 O 1.21592 * 119.99940 * 353.74263 * 7 6 5 9 9 N 1.34772 * 119.99879 * 173.46804 * 7 6 5 10 10 C 1.47500 * 118.75739 * 174.26720 * 9 7 6 11 11 C 1.53208 * 111.23645 * 221.50573 * 10 9 7 12 12 C 1.51539 * 109.42692 * 40.26543 * 11 10 9 13 13 O 1.42147 * 108.76469 * 268.50194 * 12 11 10 14 14 C 1.38018 * 119.43772 * 87.21604 * 13 12 11 15 15 H 1.09007 * 109.46394 * 56.58010 * 14 13 12 16 16 C 1.53003 * 109.47110 * 176.56683 * 14 13 12 17 17 N 1.46494 * 109.47394 * 300.01957 * 16 14 13 18 18 C 1.36937 * 120.00195 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99614 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00244 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00000 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46922 * 90.00186 * 22 20 18 24 24 H 1.48504 * 109.47012 * 210.00364 * 22 20 18 25 25 H 1.48498 * 109.47133 * 330.00207 * 22 20 18 26 26 C 1.45127 * 118.75415 * 354.52826 * 9 7 6 27 27 N 1.34396 * 108.46125 * 359.63350 * 6 5 4 28 28 N 1.28758 * 109.52342 * 0.22439 * 27 6 5 29 29 H 1.09002 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47089 * 300.00064 * 1 2 3 31 31 H 1.08997 * 109.46939 * 60.00417 * 1 2 3 32 32 H 1.08999 * 109.47178 * 239.99468 * 2 1 3 33 33 H 1.09002 * 109.46984 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46625 * 299.99432 * 3 2 1 35 35 H 1.08999 * 109.47539 * 59.99689 * 3 2 1 36 36 H 1.07997 * 126.58150 * 0.02562 * 5 4 2 37 37 H 1.09003 * 109.16907 * 342.02517 * 10 9 7 38 38 H 1.09001 * 109.16759 * 101.23135 * 10 9 7 39 39 H 1.08996 * 109.61093 * 280.22983 * 11 10 9 40 40 H 1.09000 * 109.44471 * 160.20197 * 11 10 9 41 41 H 1.09003 * 109.58642 * 148.71879 * 12 11 10 42 42 H 1.08998 * 109.58830 * 28.29319 * 12 11 10 43 43 H 1.09002 * 109.46848 * 60.01533 * 16 14 13 44 44 H 1.08997 * 109.46864 * 180.02562 * 16 14 13 45 45 H 0.97005 * 119.99917 * 359.97438 * 17 16 14 46 46 H 0.96998 * 120.00414 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.46183 * 210.72575 * 26 9 7 48 48 H 1.09000 * 109.46193 * 330.70335 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1927 -0.1524 2.4200 6 6 2.6646 -1.1487 3.2266 7 6 3.0012 -1.0136 4.6567 8 8 2.9739 0.0802 5.1870 9 7 3.3336 -2.1034 5.3766 10 6 3.7885 -1.9231 6.7680 11 6 4.9734 -2.8402 7.0877 12 6 5.9150 -2.8793 5.9010 13 8 5.5438 -3.9622 5.0583 14 6 4.5862 -3.7661 4.0839 15 1 4.8949 -2.9504 3.4301 16 6 4.4261 -5.0462 3.2612 17 7 5.7040 -5.3837 2.6295 18 6 5.8040 -6.4975 1.8391 19 1 4.9407 -7.1268 1.6812 20 6 7.0148 -6.8170 1.2401 21 7 8.0668 -6.0497 1.4321 22 14 7.1510 -8.3360 0.1613 23 1 6.8348 -7.9750 -1.2439 24 1 8.5335 -8.8733 0.2354 25 1 6.1932 -9.3671 0.6351 26 6 3.2358 -3.4095 4.7515 27 7 2.7650 -2.2740 2.4988 28 7 2.3899 -2.0393 1.2896 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.9988 0.8705 2.7068 37 1 4.0893 -0.8857 6.9147 38 1 2.9674 -2.1560 7.4460 39 1 4.6111 -3.8466 7.2969 40 1 5.5039 -2.4571 7.9595 41 1 6.9376 -3.0220 6.2504 42 1 5.8434 -1.9435 5.3466 43 1 4.1173 -5.8619 3.9149 44 1 3.6701 -4.8911 2.4915 45 1 6.4793 -4.8182 2.7710 46 1 8.9130 -6.2732 1.0139 47 1 2.9959 -4.1570 5.5077 48 1 2.4505 -3.3926 3.9957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201733374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:19 Heat of formation + Delta-G solvation = 52.196561 kcal Electronic energy + Delta-G solvation = -30809.463056 eV Core-core repulsion = 26710.254008 eV Total energy + Delta-G solvation = -4099.209049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37776 -40.21556 -38.34484 -36.77219 -35.28646 -34.57879 -33.04522 -31.65729 -31.08364 -30.52450 -28.57737 -27.91376 -26.65991 -25.21705 -24.25913 -23.44747 -22.42717 -21.21949 -21.01407 -20.75601 -19.53151 -17.70277 -17.08307 -16.78613 -16.45792 -16.22957 -16.01154 -15.53785 -15.12891 -14.75907 -14.71864 -14.58791 -14.17945 -13.88777 -13.45636 -13.42128 -13.14842 -12.98394 -12.92561 -12.86206 -12.47201 -12.23485 -12.13648 -12.07660 -11.99073 -11.70918 -11.59919 -11.19648 -10.82681 -10.81854 -10.69771 -10.60270 -10.43925 -10.22906 -9.98796 -9.82114 -9.55742 -9.34345 -9.21101 -8.70217 -8.41503 -6.69767 -5.57927 -2.84466 1.06244 1.70051 1.87275 2.91204 3.22328 3.54480 3.58786 3.61083 3.92589 4.10983 4.15669 4.26991 4.42054 4.48896 4.73408 4.76463 4.87713 4.91514 4.96034 4.99042 5.08871 5.11965 5.18594 5.29712 5.34454 5.42305 5.48674 5.56494 5.57265 5.61551 5.72561 5.74683 5.77264 5.82721 6.02402 6.17912 6.24585 6.29150 6.31819 6.51355 6.54370 6.94162 6.98378 7.28375 7.85683 7.88912 8.10939 8.21092 8.60912 9.72046 10.33351 10.69243 11.65367 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008694 B = 0.004170 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.793210 B = 6712.403264 C = 9299.943298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.142 3.858 3 C -0.169 4.169 4 N -0.357 5.357 5 C 0.092 3.908 6 C -0.109 4.109 7 C 0.601 3.399 8 O -0.547 6.547 9 N -0.594 5.594 10 C 0.113 3.887 11 C -0.166 4.166 12 C 0.073 3.927 13 O -0.370 6.370 14 C 0.098 3.902 15 H 0.050 0.950 16 C 0.170 3.830 17 N -0.725 5.725 18 C -0.229 4.229 19 H 0.069 0.931 20 C -0.017 4.017 21 N -0.934 5.934 22 Si 0.904 3.096 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.283 1.283 26 C 0.070 3.930 27 N -0.189 5.189 28 N -0.053 5.053 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.199 0.801 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.021 0.979 44 H 0.042 0.958 45 H 0.386 0.614 46 H 0.252 0.748 47 H 0.081 0.919 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.142 17.850 4.066 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 C -0.227 4.227 4 N -0.142 5.142 5 C -0.065 4.065 6 C -0.247 4.247 7 C 0.388 3.612 8 O -0.425 6.425 9 N -0.325 5.325 10 C -0.008 4.008 11 C -0.204 4.204 12 C -0.003 4.003 13 O -0.288 6.288 14 C 0.038 3.962 15 H 0.068 0.932 16 C 0.042 3.958 17 N -0.369 5.369 18 C -0.360 4.360 19 H 0.087 0.913 20 C -0.213 4.213 21 N -0.584 5.584 22 Si 0.736 3.264 23 H -0.220 1.220 24 H -0.220 1.220 25 H -0.208 1.208 26 C -0.054 4.054 27 N -0.063 5.063 28 N -0.032 5.032 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.215 0.785 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.220 0.780 46 H 0.062 0.938 47 H 0.099 0.901 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.996 16.775 3.514 23.444 hybrid contribution 0.143 0.586 -0.202 0.636 sum -15.853 17.361 3.312 23.742 Atomic orbital electron populations 1.22249 0.92544 1.03919 1.03627 1.21645 0.95579 0.93410 0.85305 1.22265 1.02881 0.93359 1.04175 1.50832 1.44354 1.10117 1.08898 1.23152 0.97828 1.00803 0.84739 1.21376 1.15202 0.91137 0.96979 1.16952 0.76679 0.84119 0.83435 1.90758 1.54424 1.26128 1.71198 1.47731 1.64584 1.06993 1.13144 1.21770 0.96812 1.01378 0.80875 1.22451 0.96863 1.01188 0.99897 1.22101 0.97705 0.90399 0.90139 1.86433 1.58360 1.36847 1.47179 1.22172 0.86095 0.99681 0.88209 0.93191 1.20585 0.90815 0.91297 0.93072 1.42205 1.07315 1.30205 1.57160 1.19243 0.95319 1.01160 1.20322 0.91279 1.24696 0.95941 0.99119 1.01497 1.69684 1.00653 1.39391 1.48660 0.86215 0.76673 0.82941 0.80564 1.21965 1.21959 1.20841 1.22909 1.01293 0.82845 0.98374 1.74955 1.10636 1.22321 0.98421 1.82187 1.17268 0.91217 1.12578 0.91095 0.91614 0.89745 0.86570 0.90971 0.89335 0.91208 0.78462 0.89233 0.91605 0.89996 0.89718 0.89400 0.93675 0.96131 0.94010 0.78027 0.93807 0.90095 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 9.52 37.16 0.35 -0.50 16 2 C 0.14 0.96 3.96 -67.93 -0.27 0.70 16 3 C -0.17 -0.78 8.85 37.16 0.33 -0.45 16 4 N -0.36 -3.90 3.54 -54.56 -0.19 -4.09 16 5 C 0.09 1.01 10.41 -16.83 -0.18 0.84 16 6 C -0.11 -1.55 6.56 -83.55 -0.55 -2.10 16 7 C 0.60 9.04 7.62 -12.47 -0.10 8.95 16 8 O -0.55 -8.84 16.22 5.28 0.09 -8.76 16 9 N -0.59 -8.46 2.20 -173.93 -0.38 -8.84 16 10 C 0.11 1.36 6.08 -3.39 -0.02 1.34 16 11 C -0.17 -1.94 5.78 -27.36 -0.16 -2.10 16 12 C 0.07 1.11 6.37 36.42 0.23 1.34 16 13 O -0.37 -7.13 9.18 -26.55 -0.24 -7.38 16 14 C 0.10 1.86 2.01 -25.78 -0.05 1.81 16 15 H 0.05 1.04 7.27 -51.93 -0.38 0.66 16 16 C 0.17 3.79 5.95 -4.04 -0.02 3.76 16 17 N -0.72 -19.98 5.49 -59.91 -0.33 -20.31 16 18 C -0.23 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 21 N -0.93 -29.76 13.06 55.49 0.72 -29.04 16 22 Si 0.90 23.40 29.55 -169.99 -5.02 18.37 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.07 1.07 4.41 -3.83 -0.02 1.05 16 27 N -0.19 -3.04 7.45 32.85 0.24 -2.80 16 28 N -0.05 -0.81 13.78 60.35 0.83 0.02 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.27 7.23 -51.93 -0.38 -0.10 16 36 H 0.20 1.53 7.35 -52.49 -0.39 1.15 16 37 H 0.09 1.09 7.07 -51.93 -0.37 0.72 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.00 8.01 -51.93 -0.42 0.59 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.71 7.39 -51.93 -0.38 0.32 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.39 11.39 7.53 -40.82 -0.31 11.08 16 46 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 47 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 48 H 0.11 1.69 5.26 -51.93 -0.27 1.42 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -36.76 385.74 -6.67 -43.43 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.50 Total: 6.50 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -0.69 Total: 7.07 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: 0.90 Total: -65.05 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.16 Total: -16.14 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.76 -6.67 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201733374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.625 kcal (2) G-P(sol) polarization free energy of solvation -36.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds