Wall clock time and date at job start Tue Mar 31 2020 20:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47101 * 2 1 4 4 N 1.46504 * 109.46986 * 119.99511 * 2 1 3 5 5 C 1.34811 * 126.59565 * 275.25864 * 4 2 1 6 6 C 1.36600 * 106.83469 * 180.16442 * 5 4 2 7 7 C 1.47532 * 125.76506 * 179.89481 * 6 5 4 8 8 O 1.21592 * 119.99940 * 353.74263 * 7 6 5 9 9 N 1.34772 * 119.99879 * 173.46804 * 7 6 5 10 10 C 1.47500 * 118.75739 * 174.26720 * 9 7 6 11 11 C 1.53208 * 111.23645 * 221.50573 * 10 9 7 12 12 C 1.51539 * 109.42692 * 40.26543 * 11 10 9 13 13 O 1.42147 * 108.76469 * 268.50194 * 12 11 10 14 14 C 1.38018 * 119.43772 * 87.21604 * 13 12 11 15 15 H 1.09007 * 109.46394 * 56.58010 * 14 13 12 16 16 C 1.53003 * 109.47110 * 176.56683 * 14 13 12 17 17 N 1.46494 * 109.47394 * 300.01957 * 16 14 13 18 18 C 1.36937 * 120.00195 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99614 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00244 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00000 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46922 * 90.00186 * 22 20 18 24 24 H 1.48504 * 109.47012 * 210.00364 * 22 20 18 25 25 H 1.48498 * 109.47133 * 330.00207 * 22 20 18 26 26 C 1.45127 * 118.75415 * 354.52826 * 9 7 6 27 27 N 1.34396 * 108.46125 * 359.63350 * 6 5 4 28 28 N 1.28758 * 109.52342 * 0.22439 * 27 6 5 29 29 H 1.09002 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47089 * 300.00064 * 1 2 3 31 31 H 1.08997 * 109.46939 * 60.00417 * 1 2 3 32 32 H 1.08999 * 109.47178 * 239.99468 * 2 1 3 33 33 H 1.09002 * 109.46984 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46625 * 299.99432 * 3 2 1 35 35 H 1.08999 * 109.47539 * 59.99689 * 3 2 1 36 36 H 1.07997 * 126.58150 * 0.02562 * 5 4 2 37 37 H 1.09003 * 109.16907 * 342.02517 * 10 9 7 38 38 H 1.09001 * 109.16759 * 101.23135 * 10 9 7 39 39 H 1.08996 * 109.61093 * 280.22983 * 11 10 9 40 40 H 1.09000 * 109.44471 * 160.20197 * 11 10 9 41 41 H 1.09003 * 109.58642 * 148.71879 * 12 11 10 42 42 H 1.08998 * 109.58830 * 28.29319 * 12 11 10 43 43 H 1.09002 * 109.46848 * 60.01533 * 16 14 13 44 44 H 1.08997 * 109.46864 * 180.02562 * 16 14 13 45 45 H 0.97005 * 119.99917 * 359.97438 * 17 16 14 46 46 H 0.96998 * 120.00414 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.46183 * 210.72575 * 26 9 7 48 48 H 1.09000 * 109.46193 * 330.70335 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1927 -0.1524 2.4200 6 6 2.6646 -1.1487 3.2266 7 6 3.0012 -1.0136 4.6567 8 8 2.9739 0.0802 5.1870 9 7 3.3336 -2.1034 5.3766 10 6 3.7885 -1.9231 6.7680 11 6 4.9734 -2.8402 7.0877 12 6 5.9150 -2.8793 5.9010 13 8 5.5438 -3.9622 5.0583 14 6 4.5862 -3.7661 4.0839 15 1 4.8949 -2.9504 3.4301 16 6 4.4261 -5.0462 3.2612 17 7 5.7040 -5.3837 2.6295 18 6 5.8040 -6.4975 1.8391 19 1 4.9407 -7.1268 1.6812 20 6 7.0148 -6.8170 1.2401 21 7 8.0668 -6.0497 1.4321 22 14 7.1510 -8.3360 0.1613 23 1 6.8348 -7.9750 -1.2439 24 1 8.5335 -8.8733 0.2354 25 1 6.1932 -9.3671 0.6351 26 6 3.2358 -3.4095 4.7515 27 7 2.7650 -2.2740 2.4988 28 7 2.3899 -2.0393 1.2896 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.9988 0.8705 2.7068 37 1 4.0893 -0.8857 6.9147 38 1 2.9674 -2.1560 7.4460 39 1 4.6111 -3.8466 7.2969 40 1 5.5039 -2.4571 7.9595 41 1 6.9376 -3.0220 6.2504 42 1 5.8434 -1.9435 5.3466 43 1 4.1173 -5.8619 3.9149 44 1 3.6701 -4.8911 2.4915 45 1 6.4793 -4.8182 2.7710 46 1 8.9130 -6.2732 1.0139 47 1 2.9959 -4.1570 5.5077 48 1 2.4505 -3.3926 3.9957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201733374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:18 Heat of formation + Delta-G solvation = 26.104718 kcal Electronic energy + Delta-G solvation = -30810.594484 eV Core-core repulsion = 26710.254008 eV Total energy + Delta-G solvation = -4100.340476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.36990 -41.40860 -39.65503 -37.47278 -36.70765 -36.23999 -34.54155 -32.86373 -32.49993 -31.70029 -30.15476 -28.31869 -27.86172 -26.83544 -25.26438 -24.75337 -24.07805 -22.50691 -22.13161 -21.79466 -20.57060 -19.20589 -18.68590 -18.04880 -17.67544 -17.29513 -17.06694 -16.72040 -16.55644 -16.00443 -15.78817 -15.67689 -15.45768 -15.10579 -14.83454 -14.73572 -14.54389 -14.20956 -13.82123 -13.63124 -13.56888 -13.43041 -13.23294 -13.20115 -13.08128 -12.78621 -12.69681 -12.55613 -12.34359 -12.17219 -12.10477 -11.89720 -11.83328 -11.75765 -11.53668 -11.31089 -11.10408 -10.92150 -10.53473 -10.36389 -9.64552 -8.93725 -7.89124 -5.17606 0.14608 0.58251 1.09159 1.47522 1.50951 1.59389 1.83962 2.11336 2.59671 2.78687 3.05824 3.31386 3.44180 3.56626 3.74371 3.79265 3.86357 3.90752 3.99673 4.06812 4.10153 4.15448 4.24171 4.33540 4.38815 4.46843 4.54851 4.58771 4.59863 4.63769 4.75170 4.75636 4.80914 4.86563 4.96556 4.99448 5.14162 5.15065 5.18532 5.22087 5.27913 5.44672 5.51689 5.52111 6.12656 6.31505 6.79372 6.81162 7.04051 7.37542 8.13996 8.39273 9.35147 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008694 B = 0.004170 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.793210 B = 6712.403264 C = 9299.943298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 C -0.163 4.163 4 N -0.343 5.343 5 C 0.112 3.888 6 C -0.136 4.136 7 C 0.600 3.400 8 O -0.561 6.561 9 N -0.594 5.594 10 C 0.110 3.890 11 C -0.153 4.153 12 C 0.068 3.932 13 O -0.399 6.399 14 C 0.115 3.885 15 H 0.024 0.976 16 C 0.171 3.829 17 N -0.738 5.738 18 C -0.240 4.240 19 H 0.076 0.924 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.976 3.024 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.267 1.267 26 C 0.087 3.913 27 N -0.216 5.216 28 N -0.096 5.096 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.034 0.966 43 H 0.024 0.976 44 H 0.041 0.959 45 H 0.372 0.628 46 H 0.249 0.751 47 H 0.095 0.905 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.802 18.926 4.495 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 C -0.221 4.221 4 N -0.128 5.128 5 C -0.047 4.047 6 C -0.276 4.276 7 C 0.388 3.612 8 O -0.440 6.440 9 N -0.325 5.325 10 C -0.010 4.010 11 C -0.191 4.191 12 C -0.008 4.008 13 O -0.318 6.318 14 C 0.055 3.945 15 H 0.042 0.958 16 C 0.044 3.956 17 N -0.380 5.380 18 C -0.372 4.372 19 H 0.094 0.906 20 C -0.270 4.270 21 N -0.624 5.624 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.192 1.192 26 C -0.037 4.037 27 N -0.089 5.089 28 N -0.075 5.075 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.250 0.750 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.113 0.887 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.114 0.886 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.707 17.841 3.939 25.443 hybrid contribution 0.633 0.375 -0.357 0.818 sum -17.073 18.217 3.582 25.222 Atomic orbital electron populations 1.22233 0.90838 1.03231 1.05327 1.22124 0.96876 0.94332 0.83626 1.22290 1.01932 0.91753 1.06160 1.51163 1.42659 1.08932 1.10012 1.23649 0.95597 1.01446 0.84012 1.21593 1.16908 0.91878 0.97184 1.17077 0.76394 0.84047 0.83725 1.90737 1.55316 1.26382 1.71573 1.47787 1.64404 1.06311 1.13984 1.21966 0.97653 1.01466 0.79954 1.22366 0.96151 1.01354 0.99229 1.22327 0.99176 0.88706 0.90636 1.86352 1.58913 1.38931 1.47652 1.21794 0.88066 0.96697 0.87899 0.95811 1.20667 0.88531 0.93094 0.93276 1.42399 1.08558 1.29607 1.57440 1.19680 0.95652 1.01669 1.20212 0.90563 1.25591 0.95599 1.02520 1.03335 1.69864 1.01072 1.41408 1.50065 0.85093 0.76609 0.79277 0.78519 1.21410 1.22121 1.19221 1.22604 0.98752 0.83816 0.98567 1.74899 1.11372 1.23641 0.98969 1.82083 1.19108 0.93744 1.12591 0.92953 0.90907 0.87000 0.86969 0.92430 0.86725 0.89865 0.74978 0.89210 0.89301 0.90081 0.86463 0.88699 0.94765 0.95836 0.94089 0.79693 0.94194 0.88631 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.52 71.98 0.69 -0.64 16 2 C 0.13 1.60 3.96 44.99 0.18 1.77 16 3 C -0.16 -1.12 8.85 71.98 0.64 -0.49 16 4 N -0.34 -7.34 3.54 -326.53 -1.16 -8.50 16 5 C 0.11 2.34 10.41 83.85 0.87 3.21 16 6 C -0.14 -3.90 6.56 40.82 0.27 -3.63 16 7 C 0.60 17.76 7.62 86.70 0.66 18.42 16 8 O -0.56 -17.50 16.22 -4.00 -0.06 -17.56 16 9 N -0.59 -16.52 2.20 -822.45 -1.81 -18.33 16 10 C 0.11 2.43 6.08 86.26 0.52 2.95 16 11 C -0.15 -3.29 5.78 30.18 0.17 -3.11 16 12 C 0.07 2.03 6.37 71.50 0.46 2.48 16 13 O -0.40 -15.69 9.18 -117.91 -1.08 -16.77 16 14 C 0.12 4.49 2.01 31.21 0.06 4.55 16 15 H 0.02 1.05 7.27 -2.38 -0.02 1.04 16 16 C 0.17 7.84 5.95 86.38 0.51 8.36 16 17 N -0.74 -42.02 5.49 -343.46 -1.88 -43.91 16 18 C -0.24 -14.51 9.99 84.03 0.84 -13.67 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 20 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 21 N -0.97 -63.46 13.06 21.65 0.28 -63.18 16 22 Si 0.98 48.62 29.55 68.60 2.03 50.65 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 26 C 0.09 2.66 4.41 87.25 0.39 3.05 16 27 N -0.22 -7.16 7.45 -49.99 -0.37 -7.54 16 28 N -0.10 -3.03 13.78 37.02 0.51 -2.52 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 35 H 0.08 0.37 7.23 -2.39 -0.02 0.35 16 36 H 0.23 2.99 7.35 -2.91 -0.02 2.97 16 37 H 0.09 2.01 7.07 -2.39 -0.02 2.00 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.81 8.01 -2.39 -0.02 1.79 16 40 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.03 1.09 7.39 -2.39 -0.02 1.07 16 43 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.37 22.91 7.53 -92.70 -0.70 22.22 16 46 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 47 H 0.10 2.62 8.12 -2.39 -0.02 2.60 16 48 H 0.11 3.39 5.26 -2.39 -0.01 3.38 16 Total: -1.00 -81.94 385.74 3.45 -78.49 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.27 Total: 30.26 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 6.72 Total: 18.90 kcal Atomic # 7 Polarization: -139.53 SS G_CDS: -4.43 Total: -143.96 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.15 Total: -34.33 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -81.94 3.45 -78.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201733374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.598 kcal (2) G-P(sol) polarization free energy of solvation -81.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds