Wall clock time and date at job start Tue Mar 31 2020 20:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47130 * 2 1 4 4 N 1.46508 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.28439 * 125.19090 * 85.65554 * 4 3 2 6 6 C 1.30856 * 110.92596 * 179.97438 * 5 4 3 7 7 C 1.39674 * 107.86493 * 0.02562 * 6 5 4 8 8 C 1.36602 * 125.18801 * 265.92340 * 4 3 2 9 9 C 1.47162 * 126.88473 * 0.02562 * 8 4 3 10 10 O 1.21624 * 120.00137 * 5.71936 * 9 8 4 11 11 N 1.34775 * 119.99683 * 185.71444 * 9 8 4 12 12 C 1.46505 * 120.00033 * 185.13012 * 11 9 8 13 13 C 1.52996 * 109.47309 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.47712 * 64.99551 * 13 12 11 15 15 C 1.52997 * 109.47419 * 184.99604 * 13 12 11 16 16 N 1.46907 * 109.47156 * 304.99667 * 13 12 11 17 17 C 1.46893 * 111.00273 * 154.99965 * 16 13 12 18 18 C 1.50694 * 109.47207 * 180.02562 * 17 16 13 19 19 O 1.21287 * 120.00263 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00217 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00308 * 180.02562 * 20 18 17 22 22 H 1.07992 * 120.00098 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00258 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00402 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99820 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47124 * 90.00335 * 25 23 21 27 27 H 1.48497 * 109.46981 * 210.00035 * 25 23 21 28 28 H 1.48504 * 109.47040 * 329.99933 * 25 23 21 29 29 H 1.09005 * 109.46552 * 60.00306 * 1 2 3 30 30 H 1.08995 * 109.46889 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47165 * 300.00354 * 1 2 3 32 32 H 1.08997 * 109.47741 * 240.00124 * 2 1 3 33 33 H 1.09004 * 109.47099 * 119.99162 * 2 1 3 34 34 H 1.09000 * 109.47385 * 59.99781 * 3 2 1 35 35 H 1.08998 * 109.47289 * 299.99697 * 3 2 1 36 36 H 1.08007 * 126.06512 * 179.97438 * 6 5 4 37 37 H 1.07999 * 127.31919 * 179.97438 * 7 6 5 38 38 H 0.97004 * 120.00357 * 5.12290 * 11 9 8 39 39 H 1.09003 * 109.46560 * 299.99935 * 12 11 9 40 40 H 1.08999 * 109.47451 * 59.99869 * 12 11 9 41 41 H 1.09001 * 109.47082 * 300.00447 * 15 13 12 42 42 H 1.09002 * 109.47252 * 59.99879 * 15 13 12 43 43 H 1.09000 * 109.47407 * 179.97438 * 15 13 12 44 44 H 1.00905 * 110.99569 * 31.04223 * 16 13 12 45 45 H 1.09000 * 109.47246 * 300.00389 * 17 16 13 46 46 H 1.09008 * 109.47268 * 60.00064 * 17 16 13 47 47 H 0.97003 * 119.99930 * 359.97438 * 20 18 17 48 48 H 0.97002 * 120.00254 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 7 4.2457 1.3629 -1.0457 6 6 5.5138 1.3879 -0.7237 7 6 5.6009 1.4935 0.6663 8 6 4.2918 1.5221 1.1145 9 6 3.8382 1.6213 2.5110 10 8 2.6538 1.5343 2.7733 11 7 4.7354 1.8084 3.4991 12 6 4.2985 1.7949 4.8975 13 6 5.5034 2.0298 5.8106 14 1 5.8977 3.0318 5.6414 15 6 5.0706 1.8921 7.2716 16 7 6.5445 1.0371 5.5127 17 6 7.8732 1.5389 5.8877 18 6 8.9128 0.4961 5.5675 19 8 8.5798 -0.5610 5.0748 20 7 10.2127 0.7379 5.8286 21 6 11.1586 -0.2106 5.5368 22 1 10.8621 -1.1518 5.0981 23 6 12.4988 0.0390 5.8054 24 7 13.4054 -0.8703 5.5262 25 14 13.0119 1.6674 6.5637 26 1 12.9933 1.5518 8.0441 27 1 14.3833 2.0137 6.1114 28 1 12.0669 2.7311 6.1382 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.3454 1.3353 -1.4108 37 1 6.4990 1.5390 1.2645 38 1 5.6704 1.9520 3.2846 39 1 3.5635 2.5841 5.0561 40 1 3.8498 0.8288 5.1287 41 1 4.2981 2.6286 7.4927 42 1 4.6764 0.8901 7.4409 43 1 5.9292 2.0590 7.9222 44 1 6.5205 0.7688 4.5402 45 1 8.0886 2.4497 5.3291 46 1 7.8917 1.7549 6.9560 47 1 10.4791 1.5835 6.2223 48 1 14.3411 -0.6959 5.7134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266943984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:26 Heat of formation + Delta-G solvation = 7.663288 kcal Electronic energy + Delta-G solvation = -28953.644152 eV Core-core repulsion = 24852.503996 eV Total energy + Delta-G solvation = -4101.140156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74417 -39.81570 -38.61469 -37.15603 -35.74068 -34.28748 -33.88034 -31.85237 -31.73646 -31.49460 -30.63240 -27.09514 -26.77497 -26.28272 -23.88523 -23.18308 -22.40794 -21.51744 -20.82828 -20.12809 -19.45682 -18.61256 -18.17836 -16.59050 -16.48724 -16.17329 -15.97276 -15.54096 -15.47891 -15.38826 -14.91962 -14.71884 -14.42795 -14.14784 -13.93801 -13.53562 -13.42457 -13.24567 -12.99505 -12.73599 -12.71389 -12.46830 -12.32457 -12.24180 -12.09302 -11.91483 -11.72494 -11.64593 -11.23963 -11.16955 -11.02120 -11.00588 -10.63200 -10.31926 -10.01122 -9.61451 -9.56464 -9.29215 -9.20141 -8.65899 -8.30402 -8.21610 -6.34522 -3.86270 1.02390 2.10976 2.42878 2.89597 2.97757 2.98564 3.03773 3.12314 3.67784 3.91729 4.06799 4.24706 4.30154 4.48790 4.51118 4.70081 4.70417 4.82005 4.93850 4.99348 5.08411 5.11495 5.17702 5.19646 5.33527 5.36881 5.41929 5.48960 5.54477 5.59628 5.61171 5.65760 5.74721 5.75425 5.83651 5.86115 5.87058 6.00664 6.20946 6.29128 6.51671 6.95345 7.05254 7.40337 7.53839 7.75947 7.89139 8.10456 8.55355 8.91188 9.38273 9.77653 10.78436 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.002416 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.589148 B =11585.222423 C =12853.883346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.255 5.255 5 N -0.277 5.277 6 C -0.002 4.002 7 C -0.183 4.183 8 C -0.043 4.043 9 C 0.596 3.404 10 O -0.540 6.540 11 N -0.715 5.715 12 C 0.120 3.880 13 C 0.071 3.929 14 H 0.051 0.949 15 C -0.138 4.138 16 N -0.664 5.664 17 C 0.046 3.954 18 C 0.448 3.552 19 O -0.563 6.563 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.188 0.812 37 H 0.162 0.838 38 H 0.403 0.597 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.349 0.651 45 H 0.045 0.955 46 H 0.090 0.910 47 H 0.370 0.630 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.212 11.140 -6.281 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.004 4.004 4 N -0.043 5.043 5 N -0.109 5.109 6 C -0.177 4.177 7 C -0.212 4.212 8 C -0.171 4.171 9 C 0.382 3.618 10 O -0.417 6.417 11 N -0.368 5.368 12 C -0.003 4.003 13 C -0.039 4.039 14 H 0.068 0.932 15 C -0.197 4.197 16 N -0.299 5.299 17 C -0.087 4.087 18 C 0.233 3.767 19 O -0.445 6.445 20 N -0.228 5.228 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.205 0.795 37 H 0.180 0.820 38 H 0.239 0.761 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.170 0.830 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.034 9.861 -6.741 25.947 hybrid contribution 2.057 1.965 0.482 2.886 sum -20.977 11.826 -6.259 24.882 Atomic orbital electron populations 1.21659 0.93988 1.02557 1.02233 1.21821 0.97053 0.95022 1.03412 1.22306 0.72513 0.99909 1.05652 1.45812 1.07594 1.49044 1.01834 1.73204 1.04377 1.19513 1.13828 1.23619 0.93450 1.05526 0.95110 1.22362 0.95622 1.07274 0.95918 1.21344 0.91583 1.14470 0.89740 1.16840 0.85521 0.76376 0.83068 1.90774 1.16017 1.50916 1.84014 1.45710 1.11611 1.73124 1.06353 1.21683 0.96807 1.03583 0.78217 1.21830 0.91429 0.94361 0.96307 0.93155 1.21739 1.01302 1.02610 0.94008 1.60115 1.02140 1.39764 1.27919 1.21800 0.89056 0.95846 1.01967 1.19671 0.82850 0.89144 0.85021 1.90580 1.80204 1.26513 1.47220 1.42205 1.06294 1.17120 1.57220 1.19425 0.85859 0.98747 1.39393 0.86252 1.25049 0.95548 0.97818 0.97743 1.69618 1.01694 1.33743 1.46898 0.86673 0.79156 0.83348 0.80184 1.19596 1.20177 1.19546 0.92420 0.91874 0.91981 0.91161 0.90875 0.86597 0.88624 0.79469 0.82012 0.76117 0.90342 0.89906 0.92377 0.91363 0.91922 0.82991 0.93666 0.89208 0.79707 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.63 16 2 C -0.13 -1.21 6.26 -26.73 -0.17 -1.38 16 3 C 0.12 1.10 5.86 -4.04 -0.02 1.08 16 4 N -0.25 -3.01 3.35 -57.13 -0.19 -3.20 16 5 N -0.28 -3.39 11.90 30.59 0.36 -3.03 16 6 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 7 C -0.18 -2.00 10.50 -38.99 -0.41 -2.41 16 8 C -0.04 -0.52 6.96 -82.06 -0.57 -1.09 16 9 C 0.60 7.22 7.78 -12.64 -0.10 7.12 16 10 O -0.54 -7.44 14.69 5.26 0.08 -7.37 16 11 N -0.72 -7.36 4.97 -61.47 -0.31 -7.67 16 12 C 0.12 1.19 5.32 -4.04 -0.02 1.16 16 13 C 0.07 0.71 2.81 -67.71 -0.19 0.52 16 14 H 0.05 0.45 7.80 -51.93 -0.40 0.05 16 15 C -0.14 -1.28 9.41 37.16 0.35 -0.93 16 16 N -0.66 -9.16 5.93 -107.99 -0.64 -9.80 16 17 C 0.05 0.69 5.96 -4.98 -0.03 0.66 16 18 C 0.45 9.62 7.82 -10.99 -0.09 9.53 16 19 O -0.56 -14.55 15.78 5.55 0.09 -14.46 16 20 N -0.59 -13.45 5.09 -10.97 -0.06 -13.51 16 21 C -0.31 -8.42 10.16 -14.93 -0.15 -8.58 16 22 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.28 13.96 55.50 0.77 -24.51 16 25 Si 0.88 18.84 27.74 -169.99 -4.71 14.13 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.12 1.15 6.21 -51.93 -0.32 0.83 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.19 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.16 1.47 7.62 -52.49 -0.40 1.07 16 38 H 0.40 3.75 6.45 -40.82 -0.26 3.49 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 44 H 0.35 4.99 6.41 -39.29 -0.25 4.74 16 45 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 46 H 0.09 1.21 7.44 -51.92 -0.39 0.82 16 47 H 0.37 7.38 5.76 -40.82 -0.24 7.14 16 48 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -34.29 398.78 -7.21 -41.49 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -7.28 Total: 16.04 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.34 Total: 5.87 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.05 Total: -61.71 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.16 Total: -21.83 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.29 -7.21 -41.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266943984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.157 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds