Wall clock time and date at job start Tue Mar 31 2020 20:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47130 * 2 1 4 4 N 1.46508 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.28439 * 125.19090 * 85.65554 * 4 3 2 6 6 C 1.30856 * 110.92596 * 179.97438 * 5 4 3 7 7 C 1.39674 * 107.86493 * 0.02562 * 6 5 4 8 8 C 1.36602 * 125.18801 * 265.92340 * 4 3 2 9 9 C 1.47162 * 126.88473 * 0.02562 * 8 4 3 10 10 O 1.21624 * 120.00137 * 5.71936 * 9 8 4 11 11 N 1.34775 * 119.99683 * 185.71444 * 9 8 4 12 12 C 1.46505 * 120.00033 * 185.13012 * 11 9 8 13 13 C 1.52996 * 109.47309 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.47712 * 64.99551 * 13 12 11 15 15 C 1.52997 * 109.47419 * 184.99604 * 13 12 11 16 16 N 1.46907 * 109.47156 * 304.99667 * 13 12 11 17 17 C 1.46893 * 111.00273 * 154.99965 * 16 13 12 18 18 C 1.50694 * 109.47207 * 180.02562 * 17 16 13 19 19 O 1.21287 * 120.00263 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00217 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00308 * 180.02562 * 20 18 17 22 22 H 1.07992 * 120.00098 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00258 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00402 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99820 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47124 * 90.00335 * 25 23 21 27 27 H 1.48497 * 109.46981 * 210.00035 * 25 23 21 28 28 H 1.48504 * 109.47040 * 329.99933 * 25 23 21 29 29 H 1.09005 * 109.46552 * 60.00306 * 1 2 3 30 30 H 1.08995 * 109.46889 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47165 * 300.00354 * 1 2 3 32 32 H 1.08997 * 109.47741 * 240.00124 * 2 1 3 33 33 H 1.09004 * 109.47099 * 119.99162 * 2 1 3 34 34 H 1.09000 * 109.47385 * 59.99781 * 3 2 1 35 35 H 1.08998 * 109.47289 * 299.99697 * 3 2 1 36 36 H 1.08007 * 126.06512 * 179.97438 * 6 5 4 37 37 H 1.07999 * 127.31919 * 179.97438 * 7 6 5 38 38 H 0.97004 * 120.00357 * 5.12290 * 11 9 8 39 39 H 1.09003 * 109.46560 * 299.99935 * 12 11 9 40 40 H 1.08999 * 109.47451 * 59.99869 * 12 11 9 41 41 H 1.09001 * 109.47082 * 300.00447 * 15 13 12 42 42 H 1.09002 * 109.47252 * 59.99879 * 15 13 12 43 43 H 1.09000 * 109.47407 * 179.97438 * 15 13 12 44 44 H 1.00905 * 110.99569 * 31.04223 * 16 13 12 45 45 H 1.09000 * 109.47246 * 300.00389 * 17 16 13 46 46 H 1.09008 * 109.47268 * 60.00064 * 17 16 13 47 47 H 0.97003 * 119.99930 * 359.97438 * 20 18 17 48 48 H 0.97002 * 120.00254 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 7 4.2457 1.3629 -1.0457 6 6 5.5138 1.3879 -0.7237 7 6 5.6009 1.4935 0.6663 8 6 4.2918 1.5221 1.1145 9 6 3.8382 1.6213 2.5110 10 8 2.6538 1.5343 2.7733 11 7 4.7354 1.8084 3.4991 12 6 4.2985 1.7949 4.8975 13 6 5.5034 2.0298 5.8106 14 1 5.8977 3.0318 5.6414 15 6 5.0706 1.8921 7.2716 16 7 6.5445 1.0371 5.5127 17 6 7.8732 1.5389 5.8877 18 6 8.9128 0.4961 5.5675 19 8 8.5798 -0.5610 5.0748 20 7 10.2127 0.7379 5.8286 21 6 11.1586 -0.2106 5.5368 22 1 10.8621 -1.1518 5.0981 23 6 12.4988 0.0390 5.8054 24 7 13.4054 -0.8703 5.5262 25 14 13.0119 1.6674 6.5637 26 1 12.9933 1.5518 8.0441 27 1 14.3833 2.0137 6.1114 28 1 12.0669 2.7311 6.1382 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.3454 1.3353 -1.4108 37 1 6.4990 1.5390 1.2645 38 1 5.6704 1.9520 3.2846 39 1 3.5635 2.5841 5.0561 40 1 3.8498 0.8288 5.1287 41 1 4.2981 2.6286 7.4927 42 1 4.6764 0.8901 7.4409 43 1 5.9292 2.0590 7.9222 44 1 6.5205 0.7688 4.5402 45 1 8.0886 2.4497 5.3291 46 1 7.8917 1.7549 6.9560 47 1 10.4791 1.5835 6.2223 48 1 14.3411 -0.6959 5.7134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266943984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:26 Heat of formation + Delta-G solvation = -19.523949 kcal Electronic energy + Delta-G solvation = -28954.823079 eV Core-core repulsion = 24852.503996 eV Total energy + Delta-G solvation = -4102.319083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.60005 -40.77387 -40.21840 -38.23772 -36.49988 -35.98975 -35.06935 -33.72598 -32.65084 -32.45666 -31.54805 -28.26777 -27.69221 -27.25979 -25.51167 -24.06916 -23.14497 -22.34466 -21.69312 -21.29069 -20.95883 -20.28208 -19.24475 -17.80369 -17.45576 -17.14371 -17.04263 -16.80886 -16.58627 -16.33209 -16.22166 -15.75750 -15.48615 -15.36526 -14.92590 -14.90084 -14.42483 -14.32677 -14.19581 -14.14592 -13.64206 -13.59516 -13.32742 -13.13902 -13.00457 -12.95296 -12.80240 -12.54416 -12.38417 -12.37942 -11.95605 -11.93743 -11.86991 -11.83474 -11.48613 -11.24874 -10.47135 -10.40460 -10.22156 -10.13663 -10.05362 -9.35659 -8.38625 -5.99499 0.13001 1.29872 1.32098 1.38274 1.46900 1.57389 1.98686 2.03373 2.10612 2.25468 2.71110 3.17982 3.34689 3.46650 3.49127 3.70223 3.78128 3.95699 4.07935 4.12758 4.17731 4.21077 4.36954 4.41334 4.45367 4.46700 4.58619 4.60391 4.63694 4.72043 4.77136 4.82326 4.96620 5.01129 5.07511 5.07913 5.18371 5.26356 5.47143 5.49075 5.55490 5.69309 5.92413 6.05266 6.20370 6.34361 6.62212 6.88077 6.91368 7.01944 7.43006 7.99889 8.78946 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.002416 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.589148 B =11585.222423 C =12853.883346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.113 3.887 4 N -0.262 5.262 5 N -0.295 5.295 6 C -0.008 4.008 7 C -0.184 4.184 8 C -0.060 4.060 9 C 0.594 3.406 10 O -0.562 6.562 11 N -0.706 5.706 12 C 0.124 3.876 13 C 0.079 3.921 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.685 5.685 17 C 0.060 3.940 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.590 5.590 21 C -0.326 4.326 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.259 1.259 27 H -0.278 1.278 28 H -0.227 1.227 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.213 0.787 37 H 0.178 0.822 38 H 0.409 0.591 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.343 0.657 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.390 0.610 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.914 14.907 -5.268 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.006 4.006 4 N -0.050 5.050 5 N -0.127 5.127 6 C -0.183 4.183 7 C -0.213 4.213 8 C -0.188 4.188 9 C 0.380 3.620 10 O -0.441 6.441 11 N -0.359 5.359 12 C 0.001 3.999 13 C -0.031 4.031 14 H 0.094 0.906 15 C -0.196 4.196 16 N -0.321 5.321 17 C -0.072 4.072 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.232 5.232 21 C -0.456 4.456 22 H 0.073 0.927 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.184 1.184 27 H -0.203 1.203 28 H -0.150 1.150 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.229 0.771 37 H 0.195 0.805 38 H 0.246 0.754 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.163 0.837 45 H 0.102 0.898 46 H 0.134 0.866 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.762 13.653 -5.714 27.995 hybrid contribution 2.201 0.655 0.118 2.300 sum -21.561 14.308 -5.596 26.475 Atomic orbital electron populations 1.21639 0.92153 1.03131 1.02993 1.21754 0.98581 0.94465 1.01869 1.22441 0.71732 1.00211 1.06230 1.46041 1.08255 1.48971 1.01715 1.73182 1.05065 1.20193 1.14296 1.24122 0.93725 1.04769 0.95670 1.22632 0.95799 1.06702 0.96212 1.21522 0.92223 1.15180 0.89876 1.16927 0.85432 0.76214 0.83419 1.90757 1.16900 1.52122 1.84339 1.45663 1.11662 1.72256 1.06285 1.21694 0.97159 1.03269 0.77805 1.21885 0.90111 0.94455 0.96609 0.90617 1.21759 1.02014 1.02537 0.93298 1.60112 1.02458 1.41783 1.27724 1.21733 0.87179 0.94237 1.04042 1.21011 0.83394 0.89676 0.82341 1.90563 1.81135 1.29314 1.48825 1.42025 1.06116 1.17031 1.58039 1.18984 0.87750 0.98134 1.40686 0.92747 1.26134 0.94722 1.03003 0.97695 1.69809 1.02372 1.36951 1.48503 0.85367 0.79180 0.77738 0.79235 1.18374 1.20297 1.15009 0.90784 0.91411 0.92053 0.91674 0.93307 0.87084 0.86863 0.77069 0.80490 0.75410 0.88854 0.91557 0.89938 0.92932 0.91844 0.83677 0.89766 0.86643 0.77445 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.13 -2.33 6.26 30.59 0.19 -2.14 16 3 C 0.11 2.13 5.86 86.38 0.51 2.64 16 4 N -0.26 -6.15 3.35 -334.68 -1.12 -7.27 16 5 N -0.29 -7.10 11.90 -57.14 -0.68 -7.78 16 6 C -0.01 -0.17 12.03 85.18 1.02 0.86 16 7 C -0.18 -3.89 10.50 22.66 0.24 -3.65 16 8 C -0.06 -1.41 6.96 40.78 0.28 -1.13 16 9 C 0.59 14.13 7.78 86.59 0.67 14.80 16 10 O -0.56 -15.47 14.69 -4.11 -0.06 -15.54 16 11 N -0.71 -13.57 4.97 -466.63 -2.32 -15.88 16 12 C 0.12 2.20 5.32 86.38 0.46 2.65 16 13 C 0.08 1.31 2.81 44.91 0.13 1.44 16 14 H 0.08 0.96 7.80 -2.38 -0.02 0.94 16 15 C -0.14 -2.11 9.41 71.98 0.68 -1.43 16 16 N -0.69 -17.35 5.93 -495.59 -2.94 -20.28 16 17 C 0.06 1.58 5.96 85.56 0.51 2.10 16 18 C 0.45 18.87 7.82 87.66 0.69 19.55 16 19 O -0.61 -32.60 15.78 -3.05 -0.05 -32.65 16 20 N -0.59 -26.36 5.09 -307.00 -1.56 -27.93 16 21 C -0.33 -18.59 10.16 84.04 0.85 -17.73 16 22 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 23 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 24 N -0.94 -55.68 13.96 21.66 0.30 -55.38 16 25 Si 0.96 37.45 27.74 68.60 1.90 39.35 16 26 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 27 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 28 H -0.23 -7.18 6.52 99.48 0.65 -6.53 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.11 2.21 6.21 -2.39 -0.01 2.19 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.21 3.10 8.06 -2.91 -0.02 3.07 16 37 H 0.18 3.01 7.62 -2.91 -0.02 2.99 16 38 H 0.41 6.86 6.45 -92.71 -0.60 6.26 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.98 7.45 -2.39 -0.02 0.96 16 44 H 0.34 9.36 6.41 -89.69 -0.57 8.78 16 45 H 0.08 1.65 8.06 -2.39 -0.02 1.63 16 46 H 0.12 2.55 7.44 -2.38 -0.02 2.53 16 47 H 0.39 14.17 5.76 -92.71 -0.53 13.64 16 48 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -80.70 398.78 0.12 -80.58 By element: Atomic # 1 Polarization: 47.16 SS G_CDS: -0.76 Total: 46.40 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 7.41 Total: 16.38 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -8.32 Total: -134.53 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.11 Total: -48.18 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 1.90 Total: 39.35 kcal Total: -80.70 0.12 -80.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266943984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.055 kcal (2) G-P(sol) polarization free energy of solvation -80.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds