Wall clock time and date at job start Tue Mar 31 2020 20:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46879 * 2 1 4 4 N 1.46501 * 109.46835 * 180.02562 * 3 2 1 5 5 N 1.28441 * 125.18825 * 274.50940 * 4 3 2 6 6 C 1.30868 * 110.92695 * 180.16368 * 5 4 3 7 7 C 1.39672 * 107.85908 * 359.60972 * 6 5 4 8 8 C 1.36597 * 125.18843 * 94.24214 * 4 3 2 9 9 C 1.47161 * 126.88883 * 359.97438 * 8 4 3 10 10 O 1.21631 * 119.99754 * 354.41924 * 9 8 4 11 11 N 1.34771 * 120.00145 * 174.41016 * 9 8 4 12 12 C 1.46501 * 120.00006 * 185.11075 * 11 9 8 13 13 C 1.53007 * 109.47078 * 180.02562 * 12 11 9 14 14 H 1.08995 * 109.47040 * 295.00108 * 13 12 11 15 15 C 1.52995 * 109.46993 * 175.00146 * 13 12 11 16 16 N 1.46905 * 109.47236 * 55.00123 * 13 12 11 17 17 C 1.46899 * 110.99803 * 205.00267 * 16 13 12 18 18 C 1.50700 * 109.46919 * 180.02562 * 17 16 13 19 19 O 1.21299 * 119.99772 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00088 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00395 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99263 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00607 * 180.02562 * 21 20 18 24 24 N 1.31421 * 119.99654 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00323 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47153 * 89.99753 * 25 23 21 27 27 H 1.48498 * 109.47012 * 209.99566 * 25 23 21 28 28 H 1.48493 * 109.47125 * 329.99906 * 25 23 21 29 29 H 1.09006 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47451 * 299.99726 * 1 2 3 31 31 H 1.08996 * 109.47882 * 60.00199 * 1 2 3 32 32 H 1.08995 * 109.46880 * 240.00090 * 2 1 3 33 33 H 1.08996 * 109.47148 * 119.99684 * 2 1 3 34 34 H 1.08995 * 109.47132 * 59.99810 * 3 2 1 35 35 H 1.09003 * 109.46699 * 300.00111 * 3 2 1 36 36 H 1.07994 * 126.07053 * 179.87647 * 6 5 4 37 37 H 1.07999 * 127.32145 * 180.24409 * 7 6 5 38 38 H 0.97006 * 120.00005 * 5.12226 * 11 9 8 39 39 H 1.09005 * 109.47218 * 300.00270 * 12 11 9 40 40 H 1.08995 * 109.47114 * 60.00922 * 12 11 9 41 41 H 1.08995 * 109.47196 * 299.99866 * 15 13 12 42 42 H 1.09003 * 109.47475 * 60.00076 * 15 13 12 43 43 H 1.08997 * 109.47167 * 180.02562 * 15 13 12 44 44 H 1.00901 * 110.99702 * 328.95584 * 16 13 12 45 45 H 1.09003 * 109.46803 * 299.99521 * 17 16 13 46 46 H 1.08996 * 109.47584 * 59.99820 * 17 16 13 47 47 H 0.96999 * 119.99907 * 359.97438 * 20 18 17 48 48 H 0.96992 * 119.99538 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.2455 1.3598 1.0455 6 6 5.5137 1.3887 0.7239 7 6 5.6008 1.4920 -0.6663 8 6 4.2916 1.5253 -1.1142 9 6 3.8382 1.6285 -2.5104 10 8 2.6535 1.5449 -2.7728 11 7 4.7356 1.8160 -3.4983 12 6 4.2773 2.0307 -4.8731 13 6 5.4875 2.2144 -5.7912 14 1 6.0159 3.1276 -5.5175 15 6 5.0156 2.3141 -7.2432 16 7 6.3903 1.0644 -5.6476 17 6 7.7679 1.4290 -6.0041 18 6 8.6627 0.2268 -5.8454 19 8 8.1984 -0.8297 -5.4716 20 7 9.9787 0.3254 -6.1189 21 6 10.7928 -0.7681 -5.9740 22 1 10.3794 -1.7088 -5.6412 23 6 12.1496 -0.6664 -6.2554 24 7 12.6525 0.4781 -6.6609 25 14 13.2587 -2.1565 -6.0587 26 1 13.3038 -2.9120 -7.3364 27 1 14.6285 -1.7100 -5.6991 28 1 12.7254 -3.0321 -4.9845 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6765 1.9563 -0.8900 36 1 6.3453 1.3371 1.4110 37 1 6.4989 1.5362 -1.2646 38 1 5.6849 1.8086 -3.2990 39 1 3.6995 1.1671 -5.2026 40 1 3.6523 2.9227 -4.9126 41 1 4.4872 1.4009 -7.5170 42 1 4.3457 3.1674 -7.3498 43 1 5.8777 2.4445 -7.8973 44 1 6.3467 0.6851 -4.7136 45 1 7.7974 1.7692 -7.0393 46 1 8.1134 2.2285 -5.3488 47 1 10.3499 1.1701 -6.4182 48 1 13.5996 0.5490 -6.8577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266943985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:30 Heat of formation + Delta-G solvation = 0.349248 kcal Electronic energy + Delta-G solvation = -28873.626737 eV Core-core repulsion = 24772.169421 eV Total energy + Delta-G solvation = -4101.457317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74176 -39.77317 -38.43987 -37.05121 -35.72987 -34.23505 -33.81788 -31.81551 -31.56427 -31.20416 -30.55440 -27.02736 -26.70861 -26.16845 -24.04656 -23.17974 -22.40582 -21.50647 -20.76968 -20.09430 -19.34996 -18.38439 -17.89948 -16.53878 -16.42722 -16.23035 -15.91489 -15.54040 -15.44335 -15.31725 -14.67852 -14.53146 -14.45084 -14.15349 -13.90947 -13.60851 -13.45790 -13.36401 -12.90087 -12.68529 -12.57499 -12.45932 -12.31597 -11.94767 -11.81156 -11.72248 -11.70075 -11.45862 -11.16845 -11.10792 -11.01243 -10.92185 -10.41594 -10.28709 -10.24739 -9.54501 -9.54004 -9.28233 -9.19115 -8.52419 -8.18503 -7.99881 -6.45031 -3.85919 1.03411 2.12045 2.42543 2.93470 2.98543 3.15923 3.25053 3.30688 3.85496 3.98840 4.22318 4.26160 4.32829 4.49661 4.57511 4.70544 4.82662 4.92206 4.94364 5.09013 5.11972 5.20219 5.20411 5.22881 5.34150 5.39226 5.44978 5.53844 5.62598 5.64782 5.67684 5.72323 5.75706 5.87944 5.90662 5.92484 6.04549 6.19140 6.27836 6.30435 6.51767 7.07380 7.10217 7.50198 7.52376 7.78321 7.90032 8.02594 8.57200 9.14553 9.50214 10.01335 10.72553 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.002366 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.257176 B =11833.888422 C =13182.723188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.255 5.255 5 N -0.277 5.277 6 C -0.002 4.002 7 C -0.184 4.184 8 C -0.041 4.041 9 C 0.595 3.405 10 O -0.539 6.539 11 N -0.714 5.714 12 C 0.120 3.880 13 C 0.071 3.929 14 H 0.050 0.950 15 C -0.138 4.138 16 N -0.664 5.664 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.582 6.582 20 N -0.562 5.562 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.188 0.812 37 H 0.162 0.838 38 H 0.403 0.597 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.347 0.653 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.391 8.357 9.580 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.004 4.004 4 N -0.042 5.042 5 N -0.110 5.110 6 C -0.178 4.178 7 C -0.213 4.213 8 C -0.170 4.170 9 C 0.381 3.619 10 O -0.417 6.417 11 N -0.367 5.367 12 C -0.003 4.003 13 C -0.039 4.039 14 H 0.068 0.932 15 C -0.196 4.196 16 N -0.299 5.299 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.466 6.466 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.205 0.795 37 H 0.179 0.821 38 H 0.239 0.761 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.168 0.832 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.387 7.332 9.876 23.810 hybrid contribution 2.391 0.392 0.036 2.423 sum -17.996 7.724 9.911 21.949 Atomic orbital electron populations 1.21660 0.93979 1.02558 1.02245 1.21820 0.97067 0.95022 1.03400 1.22313 0.72494 0.99915 1.05689 1.45807 1.07607 1.48960 1.01863 1.73204 1.04365 1.19539 1.13860 1.23605 0.93457 1.05616 0.95077 1.22348 0.95624 1.07462 0.95898 1.21360 0.91571 1.14257 0.89785 1.16841 0.85597 0.76421 0.83051 1.90777 1.16199 1.50757 1.83963 1.45712 1.09985 1.73031 1.07973 1.21689 0.96842 1.02828 0.78934 1.21824 0.92717 0.93035 0.96363 0.93171 1.21734 1.01519 1.01993 0.94386 1.60127 1.06200 1.29684 1.33916 1.21764 0.88329 0.96414 1.01852 1.19783 0.83074 0.89709 0.85055 1.90540 1.74561 1.29904 1.51632 1.41860 1.05989 1.13275 1.58753 1.19698 0.88929 0.91816 1.42439 0.87911 1.25265 0.97480 0.98135 0.97046 1.69612 1.14490 1.24510 1.45631 0.85855 0.78793 0.80812 0.78835 1.20381 1.20926 1.19403 0.91880 0.92430 0.91952 0.90864 0.91184 0.88628 0.86537 0.79517 0.82065 0.76083 0.89848 0.90496 0.91449 0.92443 0.91864 0.83163 0.89348 0.93776 0.77467 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.65 16 2 C -0.13 -1.22 6.26 -26.73 -0.17 -1.39 16 3 C 0.12 1.11 5.86 -4.04 -0.02 1.09 16 4 N -0.25 -3.02 3.35 -57.14 -0.19 -3.21 16 5 N -0.28 -3.39 11.90 30.59 0.36 -3.02 16 6 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 7 C -0.18 -2.00 10.50 -38.98 -0.41 -2.41 16 8 C -0.04 -0.50 6.96 -82.06 -0.57 -1.07 16 9 C 0.60 7.39 7.78 -12.64 -0.10 7.30 16 10 O -0.54 -7.64 14.68 5.25 0.08 -7.56 16 11 N -0.71 -7.69 4.98 -61.46 -0.31 -8.00 16 12 C 0.12 1.25 5.32 -4.04 -0.02 1.23 16 13 C 0.07 0.76 2.81 -67.71 -0.19 0.57 16 14 H 0.05 0.49 7.80 -51.93 -0.40 0.09 16 15 C -0.14 -1.38 9.41 37.16 0.35 -1.03 16 16 N -0.66 -9.74 5.93 -107.99 -0.64 -10.38 16 17 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 18 C 0.44 9.90 7.82 -10.99 -0.09 9.82 16 19 O -0.58 -15.33 15.78 5.54 0.09 -15.25 16 20 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 21 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 22 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 25 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.12 1.17 6.20 -51.93 -0.32 0.85 16 36 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.16 1.43 7.59 -52.49 -0.40 1.04 16 38 H 0.40 3.97 6.41 -40.82 -0.26 3.71 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 44 H 0.35 5.27 6.41 -39.29 -0.25 5.02 16 45 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 46 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 47 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -33.06 401.82 -7.55 -40.61 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -7.31 Total: 15.99 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.33 Total: 6.16 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.11 Total: -61.74 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.16 Total: -22.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.06 -7.55 -40.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266943985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.962 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds