Wall clock time and date at job start Tue Mar 31 2020 20:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46879 * 2 1 4 4 N 1.46501 * 109.46835 * 180.02562 * 3 2 1 5 5 N 1.28441 * 125.18825 * 274.50940 * 4 3 2 6 6 C 1.30868 * 110.92695 * 180.16368 * 5 4 3 7 7 C 1.39672 * 107.85908 * 359.60972 * 6 5 4 8 8 C 1.36597 * 125.18843 * 94.24214 * 4 3 2 9 9 C 1.47161 * 126.88883 * 359.97438 * 8 4 3 10 10 O 1.21631 * 119.99754 * 354.41924 * 9 8 4 11 11 N 1.34771 * 120.00145 * 174.41016 * 9 8 4 12 12 C 1.46501 * 120.00006 * 185.11075 * 11 9 8 13 13 C 1.53007 * 109.47078 * 180.02562 * 12 11 9 14 14 H 1.08995 * 109.47040 * 295.00108 * 13 12 11 15 15 C 1.52995 * 109.46993 * 175.00146 * 13 12 11 16 16 N 1.46905 * 109.47236 * 55.00123 * 13 12 11 17 17 C 1.46899 * 110.99803 * 205.00267 * 16 13 12 18 18 C 1.50700 * 109.46919 * 180.02562 * 17 16 13 19 19 O 1.21299 * 119.99772 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00088 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00395 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99263 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00607 * 180.02562 * 21 20 18 24 24 N 1.31421 * 119.99654 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00323 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47153 * 89.99753 * 25 23 21 27 27 H 1.48498 * 109.47012 * 209.99566 * 25 23 21 28 28 H 1.48493 * 109.47125 * 329.99906 * 25 23 21 29 29 H 1.09006 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47451 * 299.99726 * 1 2 3 31 31 H 1.08996 * 109.47882 * 60.00199 * 1 2 3 32 32 H 1.08995 * 109.46880 * 240.00090 * 2 1 3 33 33 H 1.08996 * 109.47148 * 119.99684 * 2 1 3 34 34 H 1.08995 * 109.47132 * 59.99810 * 3 2 1 35 35 H 1.09003 * 109.46699 * 300.00111 * 3 2 1 36 36 H 1.07994 * 126.07053 * 179.87647 * 6 5 4 37 37 H 1.07999 * 127.32145 * 180.24409 * 7 6 5 38 38 H 0.97006 * 120.00005 * 5.12226 * 11 9 8 39 39 H 1.09005 * 109.47218 * 300.00270 * 12 11 9 40 40 H 1.08995 * 109.47114 * 60.00922 * 12 11 9 41 41 H 1.08995 * 109.47196 * 299.99866 * 15 13 12 42 42 H 1.09003 * 109.47475 * 60.00076 * 15 13 12 43 43 H 1.08997 * 109.47167 * 180.02562 * 15 13 12 44 44 H 1.00901 * 110.99702 * 328.95584 * 16 13 12 45 45 H 1.09003 * 109.46803 * 299.99521 * 17 16 13 46 46 H 1.08996 * 109.47584 * 59.99820 * 17 16 13 47 47 H 0.96999 * 119.99907 * 359.97438 * 20 18 17 48 48 H 0.96992 * 119.99538 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.2455 1.3598 1.0455 6 6 5.5137 1.3887 0.7239 7 6 5.6008 1.4920 -0.6663 8 6 4.2916 1.5253 -1.1142 9 6 3.8382 1.6285 -2.5104 10 8 2.6535 1.5449 -2.7728 11 7 4.7356 1.8160 -3.4983 12 6 4.2773 2.0307 -4.8731 13 6 5.4875 2.2144 -5.7912 14 1 6.0159 3.1276 -5.5175 15 6 5.0156 2.3141 -7.2432 16 7 6.3903 1.0644 -5.6476 17 6 7.7679 1.4290 -6.0041 18 6 8.6627 0.2268 -5.8454 19 8 8.1984 -0.8297 -5.4716 20 7 9.9787 0.3254 -6.1189 21 6 10.7928 -0.7681 -5.9740 22 1 10.3794 -1.7088 -5.6412 23 6 12.1496 -0.6664 -6.2554 24 7 12.6525 0.4781 -6.6609 25 14 13.2587 -2.1565 -6.0587 26 1 13.3038 -2.9120 -7.3364 27 1 14.6285 -1.7100 -5.6991 28 1 12.7254 -3.0321 -4.9845 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6765 1.9563 -0.8900 36 1 6.3453 1.3371 1.4110 37 1 6.4989 1.5362 -1.2646 38 1 5.6849 1.8086 -3.2990 39 1 3.6995 1.1671 -5.2026 40 1 3.6523 2.9227 -4.9126 41 1 4.4872 1.4009 -7.5170 42 1 4.3457 3.1674 -7.3498 43 1 5.8777 2.4445 -7.8973 44 1 6.3467 0.6851 -4.7136 45 1 7.7974 1.7692 -7.0393 46 1 8.1134 2.2285 -5.3488 47 1 10.3499 1.1701 -6.4182 48 1 13.5996 0.5490 -6.8577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266943985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:29 Heat of formation + Delta-G solvation = -24.351381 kcal Electronic energy + Delta-G solvation = -28874.697837 eV Core-core repulsion = 24772.169421 eV Total energy + Delta-G solvation = -4102.528417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.59526 -40.75559 -40.09596 -38.21358 -36.49658 -35.95472 -35.05775 -33.27023 -32.62139 -32.43475 -31.52994 -28.15625 -27.67973 -27.25826 -25.70820 -24.07590 -23.14448 -22.34183 -21.70284 -21.16005 -20.89234 -19.90911 -19.25553 -17.80921 -17.44953 -17.17617 -16.95355 -16.79893 -16.48167 -16.30289 -16.20928 -15.81999 -15.58170 -15.38860 -15.03956 -14.90967 -14.30808 -14.29154 -14.13499 -13.74332 -13.59759 -13.46916 -13.27022 -13.13792 -13.00194 -12.92640 -12.79537 -12.56126 -12.39170 -12.37840 -12.11139 -11.93878 -11.86955 -11.83866 -11.48843 -11.24102 -10.46969 -10.31894 -10.13472 -10.04957 -9.99080 -9.35661 -8.45034 -5.93094 0.13299 1.30186 1.38984 1.43393 1.55381 1.57980 2.05677 2.07225 2.08903 2.30268 2.88300 3.22837 3.42723 3.49436 3.51347 3.70279 3.78313 3.96110 4.08230 4.17821 4.18632 4.27486 4.40312 4.41481 4.46938 4.48301 4.59318 4.62143 4.64384 4.72165 4.77659 4.81990 4.95809 5.01122 5.07146 5.07744 5.18166 5.26419 5.43071 5.46254 5.49121 5.69631 5.89738 6.10689 6.20400 6.35768 6.62384 6.88284 7.02420 7.15173 7.59147 8.14592 8.72134 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.002366 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.257176 B =11833.888422 C =13182.723188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.113 3.887 4 N -0.262 5.262 5 N -0.295 5.295 6 C -0.007 4.007 7 C -0.184 4.184 8 C -0.060 4.060 9 C 0.593 3.407 10 O -0.562 6.562 11 N -0.707 5.707 12 C 0.125 3.875 13 C 0.077 3.923 14 H 0.072 0.928 15 C -0.137 4.137 16 N -0.681 5.681 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.214 0.786 37 H 0.179 0.821 38 H 0.409 0.591 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.342 0.658 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 9.618 9.783 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.006 4.006 4 N -0.050 5.050 5 N -0.127 5.127 6 C -0.182 4.182 7 C -0.213 4.213 8 C -0.188 4.188 9 C 0.379 3.621 10 O -0.442 6.442 11 N -0.359 5.359 12 C 0.002 3.998 13 C -0.032 4.032 14 H 0.090 0.910 15 C -0.195 4.195 16 N -0.317 5.317 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.231 0.769 37 H 0.196 0.804 38 H 0.245 0.755 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.163 0.837 45 H 0.123 0.877 46 H 0.093 0.907 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.286 8.628 10.060 24.231 hybrid contribution 2.312 0.007 -0.026 2.312 sum -17.974 8.635 10.033 22.323 Atomic orbital electron populations 1.21641 0.92189 1.03128 1.02981 1.21751 0.98559 0.94466 1.01876 1.22439 0.71776 1.00212 1.06219 1.46026 1.08240 1.48959 1.01744 1.73185 1.05103 1.20185 1.14273 1.24133 0.93721 1.04722 0.95604 1.22644 0.95758 1.06688 0.96252 1.21508 0.92311 1.15200 0.89801 1.16951 0.85454 0.76182 0.83469 1.90760 1.17109 1.51985 1.84321 1.45670 1.10069 1.72289 1.07858 1.21682 0.96742 1.02898 0.78490 1.21885 0.92024 0.92320 0.96963 0.91020 1.21749 1.01737 1.02523 0.93533 1.60122 1.05817 1.31908 1.33808 1.21623 0.87863 0.93686 1.03631 1.20914 0.82923 0.91057 0.82665 1.90512 1.75270 1.32316 1.52927 1.41920 1.06696 1.12812 1.59523 1.19624 0.90107 0.92056 1.44283 0.90460 1.25985 0.98153 1.00769 0.96295 1.69664 1.15047 1.25678 1.45593 0.84972 0.77338 0.77672 0.78649 1.19880 1.19557 1.19821 0.91407 0.90751 0.92119 0.93357 0.91585 0.86836 0.87154 0.76915 0.80383 0.75453 0.91428 0.88802 0.92758 0.89837 0.92246 0.83734 0.87668 0.90738 0.76909 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.13 -2.36 6.26 30.59 0.19 -2.16 16 3 C 0.11 2.16 5.86 86.38 0.51 2.66 16 4 N -0.26 -6.17 3.35 -334.68 -1.12 -7.29 16 5 N -0.29 -7.02 11.90 -57.14 -0.68 -7.70 16 6 C -0.01 -0.14 12.03 85.18 1.02 0.89 16 7 C -0.18 -3.83 10.50 22.66 0.24 -3.59 16 8 C -0.06 -1.43 6.96 40.79 0.28 -1.15 16 9 C 0.59 14.59 7.78 86.59 0.67 15.26 16 10 O -0.56 -16.02 14.68 -4.13 -0.06 -16.08 16 11 N -0.71 -14.47 4.98 -466.62 -2.32 -16.79 16 12 C 0.13 2.40 5.32 86.38 0.46 2.86 16 13 C 0.08 1.48 2.81 44.92 0.13 1.61 16 14 H 0.07 1.13 7.80 -2.39 -0.02 1.11 16 15 C -0.14 -2.43 9.41 71.98 0.68 -1.75 16 16 N -0.68 -18.99 5.93 -495.57 -2.94 -21.93 16 17 C 0.06 1.95 5.97 85.56 0.51 2.46 16 18 C 0.44 19.67 7.82 87.66 0.69 20.36 16 19 O -0.62 -33.40 15.78 -3.09 -0.05 -33.45 16 20 N -0.57 -28.14 5.29 -306.98 -1.62 -29.76 16 21 C -0.33 -18.35 9.68 84.04 0.81 -17.53 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 24 N -0.92 -48.40 13.05 21.66 0.28 -48.11 16 25 Si 0.99 42.29 29.55 68.60 2.03 44.31 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 2.25 6.20 -2.39 -0.01 2.23 16 36 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.18 2.91 7.59 -2.91 -0.02 2.89 16 38 H 0.41 7.49 6.41 -92.70 -0.59 6.89 16 39 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 44 H 0.34 10.09 6.41 -89.69 -0.58 9.51 16 45 H 0.11 2.91 7.44 -2.39 -0.02 2.89 16 46 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 47 H 0.40 18.42 7.90 -92.71 -0.73 17.69 16 48 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -72.15 401.82 -0.01 -72.16 By element: Atomic # 1 Polarization: 46.96 SS G_CDS: -0.90 Total: 46.06 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 7.37 Total: 18.59 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -8.40 Total: -131.59 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.11 Total: -49.53 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -72.15 -0.01 -72.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266943985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.811 kcal (2) G-P(sol) polarization free energy of solvation -72.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds