Wall clock time and date at job start Tue Mar 31 2020 19:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46934 * 2 1 4 4 N 1.33319 * 126.11026 * 89.97512 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47177 * 179.72928 * 6 5 4 8 8 C 1.36670 * 126.10456 * 269.97632 * 3 2 1 9 9 C 1.46757 * 126.84538 * 0.02562 * 8 3 2 10 10 O 1.21682 * 120.00353 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00164 * 179.97438 * 9 8 3 12 12 C 1.46499 * 120.00168 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47426 * 180.02562 * 13 12 11 15 15 H 1.09007 * 109.46965 * 305.00163 * 14 13 12 16 16 C 1.52992 * 109.47507 * 184.99690 * 14 13 12 17 17 N 1.46904 * 109.47120 * 64.99379 * 14 13 12 18 18 C 1.46902 * 111.00295 * 205.00374 * 17 14 13 19 19 C 1.50697 * 109.47254 * 180.02562 * 18 17 14 20 20 O 1.21294 * 119.99838 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00049 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00095 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00027 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00153 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00189 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00306 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.46872 * 0.02562 * 26 24 22 28 28 H 1.48493 * 109.47055 * 120.00344 * 26 24 22 29 29 H 1.48504 * 109.47390 * 240.00458 * 26 24 22 30 30 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47004 * 300.00154 * 1 2 3 32 32 H 1.08991 * 109.47094 * 60.00173 * 1 2 3 33 33 H 1.08999 * 109.47004 * 239.99845 * 2 1 3 34 34 H 1.08996 * 109.47534 * 119.99990 * 2 1 3 35 35 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 36 36 H 0.97001 * 119.99255 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.47155 * 300.00107 * 12 11 9 38 38 H 1.08993 * 109.46937 * 60.00476 * 12 11 9 39 39 H 1.09007 * 109.46757 * 299.99737 * 13 12 11 40 40 H 1.08998 * 109.47446 * 59.99679 * 13 12 11 41 41 H 1.09005 * 109.47394 * 60.00239 * 16 14 13 42 42 H 1.09001 * 109.47095 * 179.97438 * 16 14 13 43 43 H 1.09002 * 109.47348 * 299.99759 * 16 14 13 44 44 H 1.00897 * 110.99724 * 81.05139 * 17 14 13 45 45 H 1.08998 * 109.46945 * 300.00452 * 18 17 14 46 46 H 1.08998 * 109.46969 * 59.99895 * 18 17 14 47 47 H 0.96997 * 119.99770 * 0.02562 * 21 19 18 48 48 H 0.96996 * 120.00742 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1618 1.0771 5 6 2.7127 3.3449 0.7071 6 7 2.7295 3.4072 -0.6363 7 1 2.9942 4.1693 -1.1750 8 6 2.3011 2.1800 -1.1042 9 6 2.1578 1.7743 -2.5073 10 8 1.7617 0.6565 -2.7800 11 7 2.4638 2.6401 -3.4938 12 6 2.3201 2.2353 -4.8944 13 6 2.7306 3.3943 -5.8049 14 6 2.5800 2.9718 -7.2677 15 1 3.1494 2.0589 -7.4427 16 6 3.1071 4.0839 -8.1766 17 7 1.1618 2.7285 -7.5636 18 6 1.0111 1.7948 -8.6877 19 6 -0.4537 1.5706 -8.9616 20 8 -1.2899 2.1337 -8.2871 21 7 -0.8345 0.7453 -9.9567 22 6 -2.1671 0.5409 -10.2056 23 1 -2.9117 1.0417 -9.6045 24 6 -2.5598 -0.3095 -11.2318 25 7 -1.6538 -0.9184 -11.9636 26 14 -4.3755 -0.5875 -11.5715 27 1 -5.1855 0.2087 -10.6147 28 1 -4.6902 -0.1626 -12.9591 29 1 -4.6942 -2.0290 -11.4108 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.9953 4.1458 1.3744 36 1 2.7792 3.5312 -3.2764 37 1 2.9597 1.3748 -5.0914 38 1 1.2817 1.9687 -5.0909 39 1 2.0913 4.2549 -5.6080 40 1 3.7691 3.6606 -5.6083 41 1 4.1595 4.2644 -7.9572 42 1 3.0002 3.7826 -9.2187 43 1 2.5377 4.9967 -8.0017 44 1 0.6767 3.5943 -7.7453 45 1 1.4863 2.2141 -9.5745 46 1 1.4838 0.8452 -8.4370 47 1 -0.1658 0.2953 -10.4963 48 1 -1.9278 -1.5118 -12.6802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267153227.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:32 Heat of formation + Delta-G solvation = -30.850918 kcal Electronic energy + Delta-G solvation = -28348.244193 eV Core-core repulsion = 24245.433935 eV Total energy + Delta-G solvation = -4102.810258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.55128 -39.47859 -38.47075 -37.13357 -35.21525 -34.21264 -33.86966 -32.41975 -31.55650 -31.09139 -29.67070 -28.55668 -26.33857 -24.72738 -23.97190 -23.31881 -22.72687 -21.30567 -20.87075 -19.83476 -19.27223 -18.92505 -17.87965 -16.47232 -16.19234 -16.10121 -15.88698 -15.58071 -15.15904 -14.98338 -14.57716 -14.54737 -14.21329 -14.01249 -13.95153 -13.72276 -13.55615 -13.31724 -13.09726 -12.79274 -12.47247 -12.19404 -11.98080 -11.59508 -11.56247 -11.55254 -11.41335 -11.28254 -11.07896 -11.03919 -10.93181 -10.66263 -10.35246 -10.33006 -10.21060 -10.00074 -9.50633 -9.29195 -8.77293 -8.46726 -8.05886 -7.94485 -6.40437 -3.81086 1.01165 2.50525 2.55207 2.92557 3.12752 3.17668 3.28219 3.35614 3.92086 4.08158 4.10652 4.31168 4.48536 4.61357 4.71708 4.84909 4.94644 5.04579 5.15743 5.24926 5.26598 5.30976 5.37701 5.40006 5.42411 5.47339 5.55045 5.63250 5.71993 5.79146 5.94479 5.95506 6.02658 6.04931 6.10176 6.17115 6.18667 6.27031 6.28737 6.35419 6.81866 7.17935 7.21741 7.56858 7.60400 7.63488 7.98138 8.07925 8.62524 9.19464 9.55787 10.07105 10.77393 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.002115 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.789683 B =13236.810342 C =14955.961117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.102 3.898 4 N -0.498 5.498 5 C 0.216 3.784 6 N -0.557 5.557 7 H 0.421 0.579 8 C -0.090 4.090 9 C 0.590 3.410 10 O -0.512 6.512 11 N -0.730 5.730 12 C 0.123 3.877 13 C -0.115 4.115 14 C 0.085 3.915 15 H 0.081 0.919 16 C -0.183 4.183 17 N -0.663 5.663 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.215 0.785 36 H 0.389 0.611 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.350 0.650 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.804 11.044 18.760 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.032 4.032 4 N -0.217 5.217 5 C -0.068 4.068 6 N -0.162 5.162 7 H 0.260 0.740 8 C -0.205 4.205 9 C 0.376 3.624 10 O -0.387 6.387 11 N -0.381 5.381 12 C 0.001 3.999 13 C -0.154 4.154 14 C -0.027 4.027 15 H 0.099 0.901 16 C -0.242 4.242 17 N -0.295 5.295 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.231 0.769 36 H 0.222 0.778 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.170 0.830 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.725 9.673 20.091 26.721 hybrid contribution 0.331 1.492 -2.324 2.782 sum 15.056 11.164 17.766 25.826 Atomic orbital electron populations 1.21620 0.94165 1.02033 1.01842 1.20085 0.96423 0.88595 1.03731 1.21104 0.98447 0.97134 0.86559 1.70141 1.18325 1.02731 1.30532 1.25144 1.01599 0.97988 0.82027 1.43330 1.50931 1.13138 1.08823 0.74049 1.21033 1.16113 0.88117 0.95285 1.16812 0.77998 0.85113 0.82478 1.90875 1.45462 1.19710 1.82670 1.45956 1.68655 1.16242 1.07262 1.21449 1.04159 0.97041 0.77286 1.21752 1.00809 0.98215 0.94591 1.21496 0.89956 0.97933 0.93266 0.90120 1.22514 1.01504 0.99566 1.00591 1.60203 1.09477 1.17886 1.41914 1.21701 0.96589 0.97527 0.92401 1.19815 0.89495 0.84366 0.83710 1.90526 1.53157 1.52388 1.50667 1.41870 1.08444 1.40349 1.29422 1.19747 0.83134 1.25060 1.14788 0.87890 1.25264 1.00070 0.96504 0.96180 1.69617 1.33602 1.30208 1.20918 0.85803 0.82219 0.78166 0.78179 1.19219 1.20815 1.20705 0.92003 0.92977 0.92400 0.88691 0.90669 0.76871 0.77828 0.91620 0.88893 0.91195 0.91590 0.92258 0.92258 0.92330 0.83037 0.93865 0.89566 0.77485 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 37.16 0.37 -1.20 16 2 C -0.05 -0.58 5.93 -27.88 -0.17 -0.74 16 3 C 0.10 1.20 6.40 -82.51 -0.53 0.68 16 4 N -0.50 -5.39 11.20 -10.64 -0.12 -5.51 16 5 C 0.22 1.45 13.01 -90.57 -1.18 0.27 16 6 N -0.56 -3.46 6.07 -10.79 -0.07 -3.53 16 7 H 0.42 1.00 8.32 -40.82 -0.34 0.66 16 8 C -0.09 -0.95 7.08 -82.14 -0.58 -1.53 16 9 C 0.59 7.27 7.79 -12.82 -0.10 7.17 16 10 O -0.51 -8.28 14.82 5.20 0.08 -8.20 16 11 N -0.73 -6.90 5.55 -61.60 -0.34 -7.24 16 12 C 0.12 1.38 5.56 -4.04 -0.02 1.36 16 13 C -0.12 -1.00 5.00 -26.73 -0.13 -1.13 16 14 C 0.08 0.90 2.59 -67.72 -0.18 0.72 16 15 H 0.08 0.85 7.80 -51.92 -0.40 0.45 16 16 C -0.18 -1.66 9.16 37.15 0.34 -1.32 16 17 N -0.66 -9.88 5.33 -107.99 -0.58 -10.45 16 18 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 19 C 0.44 10.37 7.82 -10.99 -0.09 10.28 16 20 O -0.58 -15.83 15.78 5.54 0.09 -15.75 16 21 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 22 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 23 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 26 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.21 6.48 -51.93 -0.34 0.87 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.21 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.39 2.27 7.72 -40.82 -0.31 1.96 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.40 7.75 -51.93 -0.40 1.00 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 43 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 44 H 0.35 5.45 8.17 -39.29 -0.32 5.13 16 45 H 0.04 0.66 7.44 -51.93 -0.39 0.28 16 46 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -36.21 403.21 -9.12 -45.33 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -7.37 Total: 14.10 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.53 Total: 7.34 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -0.44 Total: -65.15 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.16 Total: -23.95 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.21 -9.12 -45.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267153227.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.477 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds