Wall clock time and date at job start Tue Mar 31 2020 19:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46934 * 2 1 4 4 N 1.33319 * 126.11026 * 89.97512 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47177 * 179.72928 * 6 5 4 8 8 C 1.36670 * 126.10456 * 269.97632 * 3 2 1 9 9 C 1.46757 * 126.84538 * 0.02562 * 8 3 2 10 10 O 1.21682 * 120.00353 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00164 * 179.97438 * 9 8 3 12 12 C 1.46499 * 120.00168 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47426 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47173 * 54.99094 * 14 13 12 16 16 C 1.52990 * 109.47677 * 174.99718 * 14 13 12 17 17 N 1.46904 * 109.47083 * 295.00127 * 14 13 12 18 18 C 1.46892 * 111.00161 * 154.99440 * 17 14 13 19 19 C 1.50702 * 109.47078 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99970 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00108 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00194 * 180.02562 * 21 19 18 23 23 H 1.08000 * 119.99649 * 359.97438 * 22 21 19 24 24 C 1.38942 * 120.00108 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00306 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99952 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47153 * 60.00121 * 26 24 22 28 28 H 1.48504 * 109.47152 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47203 * 299.99977 * 26 24 22 30 30 H 1.08999 * 109.47004 * 300.00154 * 1 2 3 31 31 H 1.08991 * 109.47094 * 60.00173 * 1 2 3 32 32 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47004 * 239.99845 * 2 1 3 34 34 H 1.08996 * 109.47534 * 119.99990 * 2 1 3 35 35 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 36 36 H 0.97001 * 119.99255 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.47155 * 300.00107 * 12 11 9 38 38 H 1.08993 * 109.46937 * 60.00476 * 12 11 9 39 39 H 1.09007 * 109.46757 * 299.99737 * 13 12 11 40 40 H 1.08998 * 109.47446 * 59.99679 * 13 12 11 41 41 H 1.09000 * 109.47398 * 299.99836 * 16 14 13 42 42 H 1.08997 * 109.47286 * 59.99919 * 16 14 13 43 43 H 1.09001 * 109.47239 * 179.97438 * 16 14 13 44 44 H 1.00900 * 110.99579 * 278.95270 * 17 14 13 45 45 H 1.08997 * 109.47770 * 299.99879 * 18 17 14 46 46 H 1.09005 * 109.46941 * 60.00516 * 18 17 14 47 47 H 0.97002 * 119.99748 * 0.02562 * 21 19 18 48 48 H 0.97004 * 120.00710 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1618 1.0771 5 6 2.7127 3.3449 0.7071 6 7 2.7295 3.4072 -0.6363 7 1 2.9942 4.1693 -1.1750 8 6 2.3011 2.1800 -1.1042 9 6 2.1578 1.7743 -2.5073 10 8 1.7617 0.6565 -2.7800 11 7 2.4638 2.6401 -3.4938 12 6 2.3201 2.2353 -4.8944 13 6 2.7306 3.3943 -5.8049 14 6 2.5800 2.9718 -7.2677 15 1 1.5626 2.6215 -7.4418 16 6 2.8702 4.1678 -8.1765 17 7 3.5279 1.8896 -7.5649 18 6 3.0557 1.0700 -8.6887 19 6 4.0519 -0.0268 -8.9640 20 8 5.0563 -0.1170 -8.2900 21 7 3.8269 -0.9074 -9.9592 22 6 4.7329 -1.9055 -10.2093 23 1 5.6272 -1.9857 -9.6092 24 6 4.5006 -2.8136 -11.2349 25 7 3.4127 -2.7156 -11.9655 26 14 5.7355 -4.1731 -11.5762 27 1 5.8801 -5.0251 -10.3685 28 1 5.2584 -5.0014 -12.7127 29 1 7.0499 -3.5732 -11.9191 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.9953 4.1458 1.3744 36 1 2.7792 3.5312 -3.2764 37 1 2.9597 1.3748 -5.0914 38 1 1.2817 1.9687 -5.0909 39 1 2.0913 4.2549 -5.6080 40 1 3.7691 3.6606 -5.6083 41 1 2.1668 4.9708 -7.9561 42 1 3.8876 4.5181 -8.0025 43 1 2.7633 3.8667 -9.2186 44 1 4.4500 2.2566 -7.7473 45 1 2.0907 0.6299 -8.4373 46 1 2.9500 1.6953 -9.5753 47 1 3.0238 -0.8350 -10.4984 48 1 3.2503 -3.3498 -12.6813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267153228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:36 Heat of formation + Delta-G solvation = -30.742007 kcal Electronic energy + Delta-G solvation = -28314.423403 eV Core-core repulsion = 24211.617868 eV Total energy + Delta-G solvation = -4102.805535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.55203 -39.47833 -38.46792 -37.13189 -35.21788 -34.22101 -33.86773 -32.42664 -31.55634 -31.09067 -29.67779 -28.56119 -26.33580 -24.73612 -23.97405 -23.32912 -22.72760 -21.30591 -20.87114 -19.83553 -19.27018 -18.92624 -17.87670 -16.47582 -16.18738 -16.07651 -15.93442 -15.54859 -15.16382 -14.99615 -14.57543 -14.53714 -14.22681 -14.01973 -13.96792 -13.71752 -13.57875 -13.31679 -13.09612 -12.79094 -12.49862 -12.19078 -11.97650 -11.60018 -11.58291 -11.55750 -11.41268 -11.29168 -11.08071 -11.00788 -10.93510 -10.66462 -10.42708 -10.35507 -10.19699 -10.00234 -9.48360 -9.29176 -8.77401 -8.46517 -8.05673 -7.94282 -6.39962 -3.80770 1.01147 2.50500 2.55196 2.92482 3.12758 3.21789 3.27262 3.31889 3.92402 4.08396 4.10461 4.31258 4.48513 4.61422 4.71381 4.84616 4.94593 5.04628 5.15857 5.24926 5.26760 5.30058 5.36002 5.37228 5.40782 5.47326 5.52924 5.63305 5.72081 5.79265 5.92750 5.94766 6.02773 6.04794 6.08883 6.12756 6.17166 6.26956 6.28943 6.34149 6.81820 7.18042 7.21826 7.56709 7.60347 7.63634 7.98160 8.07753 8.62879 9.19532 9.55952 10.07421 10.77689 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012767 B = 0.002058 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.636910 B =13601.770706 C =15033.788261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C 0.102 3.898 4 N -0.498 5.498 5 C 0.216 3.784 6 N -0.557 5.557 7 H 0.421 0.579 8 C -0.090 4.090 9 C 0.590 3.410 10 O -0.512 6.512 11 N -0.730 5.730 12 C 0.123 3.877 13 C -0.115 4.115 14 C 0.085 3.915 15 H 0.081 0.919 16 C -0.183 4.183 17 N -0.663 5.663 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.584 6.584 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.215 0.785 36 H 0.389 0.611 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.350 0.650 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 18.742 18.732 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.032 4.032 4 N -0.217 5.217 5 C -0.068 4.068 6 N -0.162 5.162 7 H 0.260 0.740 8 C -0.205 4.205 9 C 0.376 3.624 10 O -0.387 6.387 11 N -0.381 5.381 12 C 0.001 3.999 13 C -0.154 4.154 14 C -0.027 4.027 15 H 0.099 0.901 16 C -0.242 4.242 17 N -0.295 5.295 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.231 0.769 36 H 0.222 0.778 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.170 0.830 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.046 16.995 20.053 26.972 hybrid contribution 0.702 1.372 -2.305 2.772 sum -5.343 18.367 17.748 26.094 Atomic orbital electron populations 1.21606 0.94330 1.01932 1.01605 1.20095 0.96269 0.88658 1.03961 1.21094 0.98525 0.97054 0.86559 1.70141 1.18365 1.02689 1.30534 1.25144 1.01586 0.98000 0.82027 1.43330 1.50908 1.13160 1.08823 0.74050 1.21034 1.16068 0.88144 0.95286 1.16811 0.78091 0.85022 0.82478 1.90875 1.45697 1.19475 1.82668 1.45956 1.68653 1.16242 1.07263 1.21449 1.02322 0.98883 0.77284 1.21752 1.01996 0.97026 0.94591 1.21495 0.97546 0.90346 0.93263 0.90122 1.22512 1.02022 0.99049 1.00592 1.60200 1.05299 1.22082 1.41903 1.21700 0.99011 0.95098 0.92397 1.19815 0.88576 0.85307 0.83728 1.90524 1.29972 1.75562 1.50715 1.41858 1.22467 1.26275 1.29421 1.19647 1.03003 1.05306 1.14921 0.88000 1.25257 0.97451 0.99082 0.96156 1.69600 1.25769 1.38019 1.20966 0.85919 0.80081 0.80297 0.77932 1.19837 1.20987 1.19961 0.93015 0.92633 0.92036 0.88550 0.90577 0.76869 0.77829 0.88895 0.91614 0.91602 0.91186 0.92254 0.92335 0.92257 0.83034 0.89569 0.93873 0.77478 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.05 -0.60 5.93 -27.88 -0.17 -0.76 16 3 C 0.10 1.21 6.40 -82.51 -0.53 0.68 16 4 N -0.50 -5.39 11.20 -10.64 -0.12 -5.51 16 5 C 0.22 1.45 13.01 -90.57 -1.18 0.27 16 6 N -0.56 -3.46 6.07 -10.79 -0.07 -3.53 16 7 H 0.42 1.00 8.32 -40.82 -0.34 0.66 16 8 C -0.09 -0.95 7.08 -82.14 -0.58 -1.53 16 9 C 0.59 7.28 7.79 -12.82 -0.10 7.18 16 10 O -0.51 -8.29 14.82 5.20 0.08 -8.21 16 11 N -0.73 -6.91 5.55 -61.60 -0.34 -7.25 16 12 C 0.12 1.38 5.56 -4.04 -0.02 1.36 16 13 C -0.12 -1.00 5.00 -26.73 -0.13 -1.14 16 14 C 0.08 0.90 2.59 -67.72 -0.18 0.72 16 15 H 0.08 0.85 7.80 -51.93 -0.40 0.45 16 16 C -0.18 -1.66 9.16 37.15 0.34 -1.32 16 17 N -0.66 -9.89 5.33 -108.00 -0.58 -10.47 16 18 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 19 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 20 O -0.58 -15.85 15.78 5.55 0.09 -15.77 16 21 N -0.56 -14.37 5.29 -10.96 -0.06 -14.42 16 22 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.72 13.05 55.49 0.72 -23.99 16 26 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.26 6.48 -51.93 -0.34 0.93 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.21 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.39 2.27 7.72 -40.82 -0.31 1.96 16 37 H 0.09 1.40 7.75 -51.93 -0.40 1.00 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 43 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 44 H 0.35 5.46 8.17 -39.29 -0.32 5.14 16 45 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 46 H 0.04 0.66 7.44 -51.93 -0.39 0.28 16 47 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -36.18 403.20 -9.12 -45.30 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -7.37 Total: 14.06 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -2.53 Total: 7.44 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.44 Total: -65.18 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.16 Total: -23.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.18 -9.12 -45.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267153228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.555 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds