Wall clock time and date at job start Tue Mar 31 2020 19:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46934 * 2 1 4 4 N 1.33319 * 126.11026 * 89.97512 * 3 2 1 5 5 C 1.30858 * 109.68688 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16257 * 0.26769 * 5 4 3 7 7 H 0.97003 * 126.47177 * 179.72928 * 6 5 4 8 8 C 1.36670 * 126.10456 * 269.97632 * 3 2 1 9 9 C 1.46757 * 126.84538 * 0.02562 * 8 3 2 10 10 O 1.21682 * 120.00353 * 0.02562 * 9 8 3 11 11 N 1.34782 * 120.00164 * 179.97438 * 9 8 3 12 12 C 1.46499 * 120.00168 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47426 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.47173 * 54.99094 * 14 13 12 16 16 C 1.52990 * 109.47677 * 174.99718 * 14 13 12 17 17 N 1.46904 * 109.47083 * 295.00127 * 14 13 12 18 18 C 1.46892 * 111.00161 * 154.99440 * 17 14 13 19 19 C 1.50702 * 109.47078 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99970 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00108 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00194 * 180.02562 * 21 19 18 23 23 H 1.08000 * 119.99649 * 359.97438 * 22 21 19 24 24 C 1.38942 * 120.00108 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00306 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99952 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47153 * 60.00121 * 26 24 22 28 28 H 1.48504 * 109.47152 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47203 * 299.99977 * 26 24 22 30 30 H 1.08999 * 109.47004 * 300.00154 * 1 2 3 31 31 H 1.08991 * 109.47094 * 60.00173 * 1 2 3 32 32 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47004 * 239.99845 * 2 1 3 34 34 H 1.08996 * 109.47534 * 119.99990 * 2 1 3 35 35 H 1.08002 * 125.41461 * 179.97438 * 5 4 3 36 36 H 0.97001 * 119.99255 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.47155 * 300.00107 * 12 11 9 38 38 H 1.08993 * 109.46937 * 60.00476 * 12 11 9 39 39 H 1.09007 * 109.46757 * 299.99737 * 13 12 11 40 40 H 1.08998 * 109.47446 * 59.99679 * 13 12 11 41 41 H 1.09000 * 109.47398 * 299.99836 * 16 14 13 42 42 H 1.08997 * 109.47286 * 59.99919 * 16 14 13 43 43 H 1.09001 * 109.47239 * 179.97438 * 16 14 13 44 44 H 1.00900 * 110.99579 * 278.95270 * 17 14 13 45 45 H 1.08997 * 109.47770 * 299.99879 * 18 17 14 46 46 H 1.09005 * 109.46941 * 60.00516 * 18 17 14 47 47 H 0.97002 * 119.99748 * 0.02562 * 21 19 18 48 48 H 0.97004 * 120.00710 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1618 1.0771 5 6 2.7127 3.3449 0.7071 6 7 2.7295 3.4072 -0.6363 7 1 2.9942 4.1693 -1.1750 8 6 2.3011 2.1800 -1.1042 9 6 2.1578 1.7743 -2.5073 10 8 1.7617 0.6565 -2.7800 11 7 2.4638 2.6401 -3.4938 12 6 2.3201 2.2353 -4.8944 13 6 2.7306 3.3943 -5.8049 14 6 2.5800 2.9718 -7.2677 15 1 1.5626 2.6215 -7.4418 16 6 2.8702 4.1678 -8.1765 17 7 3.5279 1.8896 -7.5649 18 6 3.0557 1.0700 -8.6887 19 6 4.0519 -0.0268 -8.9640 20 8 5.0563 -0.1170 -8.2900 21 7 3.8269 -0.9074 -9.9592 22 6 4.7329 -1.9055 -10.2093 23 1 5.6272 -1.9857 -9.6092 24 6 4.5006 -2.8136 -11.2349 25 7 3.4127 -2.7156 -11.9655 26 14 5.7355 -4.1731 -11.5762 27 1 5.8801 -5.0251 -10.3685 28 1 5.2584 -5.0014 -12.7127 29 1 7.0499 -3.5732 -11.9191 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.9953 4.1458 1.3744 36 1 2.7792 3.5312 -3.2764 37 1 2.9597 1.3748 -5.0914 38 1 1.2817 1.9687 -5.0909 39 1 2.0913 4.2549 -5.6080 40 1 3.7691 3.6606 -5.6083 41 1 2.1668 4.9708 -7.9561 42 1 3.8876 4.5181 -8.0025 43 1 2.7633 3.8667 -9.2186 44 1 4.4500 2.2566 -7.7473 45 1 2.0907 0.6299 -8.4373 46 1 2.9500 1.6953 -9.5753 47 1 3.0238 -0.8350 -10.4984 48 1 3.2503 -3.3498 -12.6813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267153228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:35 Heat of formation + Delta-G solvation = -59.415586 kcal Electronic energy + Delta-G solvation = -28315.666783 eV Core-core repulsion = 24211.617868 eV Total energy + Delta-G solvation = -4104.048915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.23787 -40.45385 -40.16666 -38.31668 -36.23841 -35.87934 -35.02824 -33.36860 -33.17785 -32.45854 -30.52360 -29.34916 -27.95912 -25.90398 -25.35365 -24.20640 -23.45388 -22.15399 -21.73235 -21.13123 -20.60241 -19.93278 -19.66820 -17.76447 -17.19378 -17.01594 -16.96869 -16.73680 -16.43302 -16.29369 -15.83258 -15.69554 -15.42542 -15.24607 -15.08904 -14.83563 -14.47143 -14.35641 -14.21794 -14.04149 -13.56402 -13.49763 -13.32532 -13.10538 -12.85523 -12.67541 -12.44923 -12.43393 -12.29029 -12.21443 -12.11802 -11.97494 -11.75000 -11.51018 -11.49331 -11.03591 -10.90363 -10.35159 -10.23685 -10.02413 -9.52687 -9.24794 -8.47386 -5.96225 0.24662 1.38666 1.40378 1.51391 1.85356 1.87812 2.05118 2.16803 2.24428 2.28430 2.94874 3.19842 3.50489 3.55040 3.76787 3.85015 4.02806 4.14672 4.20713 4.22237 4.33521 4.45538 4.46679 4.48983 4.51267 4.56882 4.61746 4.65804 4.73561 4.75227 4.90112 5.01010 5.06747 5.17593 5.19153 5.24325 5.26891 5.31532 5.39614 5.40569 5.51449 5.91440 6.14055 6.34248 6.45517 6.47349 6.59467 6.93119 7.11484 7.11782 7.55712 8.11227 8.69771 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012767 B = 0.002058 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.636910 B =13601.770706 C =15033.788261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.053 4.053 3 C 0.081 3.919 4 N -0.536 5.536 5 C 0.242 3.758 6 N -0.538 5.538 7 H 0.441 0.559 8 C -0.105 4.105 9 C 0.585 3.415 10 O -0.562 6.562 11 N -0.712 5.712 12 C 0.129 3.871 13 C -0.102 4.102 14 C 0.083 3.917 15 H 0.083 0.917 16 C -0.176 4.176 17 N -0.678 5.678 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.269 1.269 29 H -0.270 1.270 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.266 0.734 36 H 0.410 0.590 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.344 0.656 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 21.627 19.356 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 C -0.053 4.053 4 N -0.256 5.256 5 C -0.043 4.043 6 N -0.145 5.145 7 H 0.284 0.716 8 C -0.222 4.222 9 C 0.372 3.628 10 O -0.441 6.441 11 N -0.363 5.363 12 C 0.006 3.994 13 C -0.140 4.140 14 C -0.027 4.027 15 H 0.101 0.899 16 C -0.234 4.234 17 N -0.310 5.310 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.212 5.212 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.194 1.194 29 H -0.195 1.195 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.281 0.719 36 H 0.246 0.754 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.164 0.836 45 H 0.117 0.883 46 H 0.085 0.915 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.230 19.972 20.650 29.396 hybrid contribution 0.764 0.567 -2.402 2.583 sum -5.467 20.539 18.248 28.013 Atomic orbital electron populations 1.21527 0.93698 1.02341 1.01050 1.20028 0.96886 0.89336 1.02910 1.21168 0.99255 0.97278 0.87623 1.70122 1.20362 1.04431 1.30667 1.26126 0.98153 0.97599 0.82402 1.43203 1.49898 1.12350 1.09011 0.71629 1.20666 1.17614 0.89918 0.93977 1.17129 0.77412 0.84615 0.83596 1.90847 1.48064 1.21630 1.83543 1.45731 1.67636 1.16816 1.06164 1.21254 1.00782 0.98775 0.78639 1.21694 1.03152 0.96782 0.92404 1.21641 0.96486 0.89781 0.94820 0.89857 1.22427 1.02907 0.98745 0.99361 1.60206 1.05994 1.23976 1.40865 1.21525 0.97060 0.93605 0.94374 1.20972 0.88935 0.85667 0.82043 1.90488 1.32105 1.76696 1.51755 1.41943 1.22359 1.26544 1.30310 1.19614 1.03416 1.07400 1.15986 0.90454 1.26042 0.99204 1.00706 0.95391 1.69661 1.26672 1.38694 1.21056 0.84998 0.77939 0.77478 0.77977 1.19935 1.19362 1.19542 0.92351 0.94132 0.91200 0.90901 0.90165 0.71889 0.75364 0.93279 0.92555 0.87917 0.90562 0.89738 0.92083 0.93267 0.83642 0.88346 0.91463 0.76998 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.89 71.98 0.71 -2.11 16 2 C -0.05 -1.31 5.93 29.85 0.18 -1.13 16 3 C 0.08 1.93 6.40 41.97 0.27 2.20 16 4 N -0.54 -10.87 11.20 -187.58 -2.10 -12.98 16 5 C 0.24 2.45 13.01 180.33 2.35 4.80 16 6 N -0.54 -5.23 6.07 -188.04 -1.14 -6.37 16 7 H 0.44 0.45 8.32 -92.71 -0.77 -0.32 16 8 C -0.11 -2.17 7.08 40.01 0.28 -1.89 16 9 C 0.59 14.74 7.79 86.47 0.67 15.41 16 10 O -0.56 -19.47 14.82 -4.29 -0.06 -19.54 16 11 N -0.71 -12.84 5.55 -467.01 -2.59 -15.43 16 12 C 0.13 2.85 5.56 86.38 0.48 3.33 16 13 C -0.10 -1.52 5.00 30.59 0.15 -1.37 16 14 C 0.08 1.59 2.59 44.91 0.12 1.71 16 15 H 0.08 1.58 7.80 -2.39 -0.02 1.57 16 16 C -0.18 -2.67 9.16 71.98 0.66 -2.01 16 17 N -0.68 -19.98 5.33 -495.60 -2.64 -22.62 16 18 C 0.07 2.26 5.96 85.56 0.51 2.77 16 19 C 0.44 21.09 7.82 87.66 0.69 21.77 16 20 O -0.62 -35.18 15.78 -3.07 -0.05 -35.23 16 21 N -0.57 -30.09 5.29 -306.99 -1.62 -31.72 16 22 C -0.33 -19.43 9.68 84.04 0.81 -18.61 16 23 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 24 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 25 N -0.92 -50.44 13.05 21.66 0.28 -50.16 16 26 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 2.12 6.48 -2.39 -0.02 2.10 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.27 -0.34 8.06 -2.91 -0.02 -0.37 16 36 H 0.41 3.75 7.72 -92.71 -0.72 3.03 16 37 H 0.05 1.55 7.75 -2.38 -0.02 1.53 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 43 H 0.05 0.86 7.45 -2.39 -0.02 0.84 16 44 H 0.34 10.70 8.17 -89.69 -0.73 9.96 16 45 H 0.10 3.12 8.05 -2.39 -0.02 3.10 16 46 H 0.07 1.97 7.44 -2.38 -0.02 1.96 16 47 H 0.40 19.68 7.90 -92.71 -0.73 18.94 16 48 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -84.02 403.20 -1.48 -85.51 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -1.93 Total: 38.07 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 8.35 Total: 24.60 kcal Atomic # 7 Polarization: -129.46 SS G_CDS: -9.82 Total: -139.28 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -0.11 Total: -54.77 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -84.02 -1.48 -85.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267153228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.092 kcal (2) G-P(sol) polarization free energy of solvation -84.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds