Wall clock time and date at job start Tue Mar 31 2020 20:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 N 1.46494 * 109.46705 * 119.99824 * 2 1 3 5 5 N 1.28446 * 125.19732 * 305.34303 * 4 2 1 6 6 C 1.30861 * 110.93168 * 180.31476 * 5 4 2 7 7 C 1.39677 * 107.86118 * 359.71699 * 6 5 4 8 8 C 1.36598 * 125.18815 * 125.17517 * 4 2 1 9 9 C 1.47166 * 126.88442 * 359.96119 * 8 4 2 10 10 O 1.21629 * 119.99684 * 354.34802 * 9 8 4 11 11 N 1.34774 * 120.00021 * 174.62628 * 9 8 4 12 12 C 1.46502 * 120.00269 * 184.80410 * 11 9 8 13 13 C 1.52994 * 109.47595 * 180.02562 * 12 11 9 14 14 N 1.46898 * 109.47499 * 180.02562 * 13 12 11 15 15 C 1.46901 * 111.00003 * 66.04496 * 14 13 12 16 16 C 1.46897 * 111.00162 * 189.99770 * 14 13 12 17 17 C 1.50701 * 109.46971 * 169.99489 * 16 14 13 18 18 O 1.21285 * 120.00332 * 0.02562 * 17 16 14 19 19 N 1.34778 * 120.00038 * 179.97438 * 17 16 14 20 20 C 1.37092 * 120.00297 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00024 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00181 * 180.02562 * 20 19 17 23 23 N 1.31419 * 120.00047 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00001 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47033 * 90.00563 * 24 22 20 26 26 H 1.48501 * 109.47266 * 210.00211 * 24 22 20 27 27 H 1.48496 * 109.47245 * 330.00410 * 24 22 20 28 28 H 1.09000 * 109.47572 * 299.99867 * 1 2 3 29 29 H 1.09007 * 109.47104 * 60.00142 * 1 2 3 30 30 H 1.08998 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47150 * 239.99803 * 2 1 3 32 32 H 1.08996 * 109.46757 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47223 * 299.99927 * 3 2 1 34 34 H 1.09000 * 109.46913 * 59.99730 * 3 2 1 35 35 H 1.08001 * 126.07187 * 179.69130 * 6 5 4 36 36 H 1.07996 * 127.32386 * 179.97438 * 7 6 5 37 37 H 0.96999 * 120.00317 * 4.80835 * 11 9 8 38 38 H 1.09000 * 109.46886 * 300.00771 * 12 11 9 39 39 H 1.09005 * 109.46672 * 60.00184 * 12 11 9 40 40 H 1.09008 * 109.46865 * 300.00181 * 13 12 11 41 41 H 1.08997 * 109.47299 * 60.00013 * 13 12 11 42 42 H 1.08994 * 109.47244 * 60.00137 * 15 14 13 43 43 H 1.08998 * 109.46891 * 180.02562 * 15 14 13 44 44 H 1.09000 * 109.46787 * 300.00081 * 15 14 13 45 45 H 1.08997 * 109.47453 * 290.00010 * 16 14 13 46 46 H 1.08998 * 109.46789 * 50.00125 * 16 14 13 47 47 H 0.97002 * 119.99669 * 0.02562 * 19 17 16 48 48 H 0.97001 * 119.99637 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.6925 -0.3992 2.4040 6 6 2.2962 -1.1895 3.2546 7 6 3.0844 -2.0823 2.5248 8 6 2.8869 -1.7447 1.1971 9 6 3.4959 -2.3885 0.0221 10 8 3.1596 -2.0531 -1.0976 11 7 4.4221 -3.3536 0.1869 12 6 5.1046 -3.9206 -0.9789 13 6 6.0984 -4.9888 -0.5185 14 7 6.7832 -5.5569 -1.6873 15 6 7.6301 -4.5507 -2.3418 16 6 7.5668 -6.7420 -1.3139 17 6 8.0512 -7.4370 -2.5603 18 8 7.7717 -6.9890 -3.6521 19 7 8.7961 -8.5560 -2.4616 20 6 9.2372 -9.1880 -3.5954 21 1 8.9876 -8.7895 -4.5677 22 6 10.0046 -10.3418 -3.4937 23 7 10.4279 -10.9474 -4.5805 24 14 10.4358 -11.0315 -1.8121 25 1 9.3852 -11.9909 -1.3863 26 1 11.7442 -11.7302 -1.8843 27 1 10.5207 -9.9220 -0.8289 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.2021 -1.1569 4.3300 36 1 3.7142 -2.8687 2.9137 37 1 4.6367 -3.6729 1.0773 38 1 4.3701 -4.3715 -1.6462 39 1 5.6386 -3.1305 -1.5070 40 1 6.8329 -4.5382 0.1491 41 1 5.5641 -5.7787 0.0094 42 1 8.3804 -4.1932 -1.6367 43 1 8.1249 -4.9976 -3.2041 44 1 7.0128 -3.7146 -2.6705 45 1 8.4228 -6.4368 -0.7120 46 1 6.9418 -7.4239 -0.7374 47 1 9.0199 -8.9141 -1.5884 48 1 10.9639 -11.7527 -4.5095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267197284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:42 Heat of formation + Delta-G solvation = 21.644196 kcal Electronic energy + Delta-G solvation = -28361.392304 eV Core-core repulsion = 24260.858406 eV Total energy + Delta-G solvation = -4100.533899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.92697 -39.77683 -38.82629 -36.99643 -36.16251 -34.81506 -33.89574 -31.71510 -31.56838 -30.70453 -29.43787 -27.87953 -27.75232 -25.60430 -24.30992 -23.41134 -22.99232 -21.41709 -21.21590 -19.89580 -19.38299 -18.32316 -18.17391 -16.69709 -16.43424 -16.12479 -16.01912 -15.76260 -15.23518 -15.08559 -15.02919 -14.84481 -14.36997 -14.20847 -13.94463 -13.71312 -13.43312 -13.41050 -13.15126 -13.09739 -12.67859 -12.60703 -12.46462 -12.11335 -11.93548 -11.83525 -11.70357 -11.59336 -11.41840 -11.19439 -11.12206 -11.07001 -10.61922 -10.27674 -9.99379 -9.64789 -9.56153 -9.43683 -9.29506 -8.63844 -8.20477 -8.05538 -6.32657 -3.84201 0.90509 1.96356 2.27726 2.76818 2.86791 3.00084 3.04907 3.13401 3.70648 3.91303 4.07030 4.08460 4.22551 4.44604 4.52490 4.66342 4.72074 4.77692 4.78670 4.92432 5.09796 5.13526 5.18056 5.18595 5.26340 5.26844 5.34122 5.41189 5.44056 5.55190 5.66473 5.67808 5.70643 5.76401 5.77219 5.85724 5.92296 6.01714 6.15165 6.41352 6.45858 6.99125 7.06887 7.18066 7.56319 7.69440 7.78510 8.12750 8.58204 8.93600 9.40469 9.81085 10.80397 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028081 B = 0.001722 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.883042 B =16251.708648 C =16882.237598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 C -0.159 4.159 4 N -0.247 5.247 5 N -0.273 5.273 6 C -0.007 4.007 7 C -0.190 4.190 8 C -0.039 4.039 9 C 0.592 3.408 10 O -0.537 6.537 11 N -0.711 5.711 12 C 0.123 3.877 13 C 0.044 3.956 14 N -0.515 5.515 15 C 0.016 3.984 16 C 0.044 3.956 17 C 0.452 3.548 18 O -0.558 6.558 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.137 0.863 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.186 0.814 36 H 0.160 0.840 37 H 0.403 0.597 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.017 0.983 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.931 20.259 18.518 31.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 C -0.217 4.217 4 N -0.036 5.036 5 N -0.106 5.106 6 C -0.182 4.182 7 C -0.219 4.219 8 C -0.168 4.168 9 C 0.377 3.623 10 O -0.414 6.414 11 N -0.363 5.363 12 C -0.001 4.001 13 C -0.085 4.085 14 N -0.239 5.239 15 C -0.131 4.131 16 C -0.087 4.087 17 C 0.237 3.763 18 O -0.439 6.439 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.155 0.845 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.203 0.797 36 H 0.177 0.823 37 H 0.238 0.762 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.035 0.965 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.364 21.450 16.283 31.512 hybrid contribution 1.793 -1.387 2.546 3.409 sum -14.572 20.062 18.829 31.135 Atomic orbital electron populations 1.22093 0.92593 1.03223 1.03638 1.22169 0.96280 0.94513 0.84590 1.22129 1.01944 0.94006 1.03616 1.46042 1.30033 1.21790 1.05689 1.73140 1.22690 1.24901 0.89873 1.23571 0.99020 0.95637 0.99977 1.22256 1.05155 1.03813 0.90704 1.21395 1.02607 0.97172 0.95638 1.16868 0.79088 0.79532 0.86772 1.90753 1.61662 1.63855 1.25141 1.45575 1.40508 1.38913 1.11297 1.21422 0.95439 0.96136 0.87067 1.22252 0.96450 0.97094 0.92708 1.61424 1.31369 1.06449 1.24635 1.22653 0.95506 0.94703 1.00267 1.21902 0.96897 0.92986 0.96928 1.19596 0.83376 0.83111 0.90169 1.90536 1.59415 1.65730 1.28252 1.42204 1.48010 1.24518 1.08283 1.19426 1.29544 1.06717 0.87643 0.86240 1.25043 0.97150 0.96536 0.97455 1.69626 1.35742 1.19378 1.27330 0.86670 0.79212 0.79728 0.83742 1.19598 1.20203 1.19567 0.91066 0.90152 0.91936 0.84508 0.91996 0.90055 0.91265 0.79737 0.82254 0.76217 0.89678 0.90764 0.94344 0.90069 0.96463 0.88259 0.91689 0.93174 0.89128 0.79739 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.30 37.16 0.35 -0.79 16 2 C 0.12 1.09 3.56 -67.93 -0.24 0.85 16 3 C -0.16 -1.14 9.45 37.16 0.35 -0.79 16 4 N -0.25 -2.49 3.09 -50.69 -0.16 -2.65 16 5 N -0.27 -2.72 11.52 30.59 0.35 -2.37 16 6 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 7 C -0.19 -1.43 10.50 -38.98 -0.41 -1.84 16 8 C -0.04 -0.39 6.96 -82.06 -0.57 -0.96 16 9 C 0.59 6.47 7.79 -12.64 -0.10 6.37 16 10 O -0.54 -7.43 14.40 5.25 0.08 -7.35 16 11 N -0.71 -6.16 5.54 -61.47 -0.34 -6.50 16 12 C 0.12 1.29 5.60 -4.04 -0.02 1.27 16 13 C 0.04 0.45 5.07 -3.83 -0.02 0.43 16 14 N -0.51 -7.63 4.50 -244.38 -1.10 -8.73 16 15 C 0.02 0.24 8.96 60.07 0.54 0.78 16 16 C 0.04 0.69 5.45 -4.98 -0.03 0.67 16 17 C 0.45 9.93 7.48 -10.98 -0.08 9.84 16 18 O -0.56 -14.51 13.91 5.55 0.08 -14.43 16 19 N -0.59 -13.70 5.09 -10.97 -0.06 -13.76 16 20 C -0.30 -8.47 10.16 -14.94 -0.15 -8.63 16 21 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.48 13.96 55.50 0.77 -24.70 16 24 Si 0.88 19.00 27.74 -169.99 -4.71 14.28 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 28 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.14 1.40 5.33 -51.93 -0.28 1.12 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.16 0.68 7.58 -52.49 -0.40 0.28 16 37 H 0.40 2.31 7.50 -40.82 -0.31 2.00 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.84 6.55 -51.93 -0.34 0.50 16 40 H 0.04 0.34 8.12 -51.92 -0.42 -0.08 16 41 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 42 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.10 1.85 5.82 -51.93 -0.30 1.55 16 44 H 0.06 0.87 6.47 -51.93 -0.34 0.53 16 45 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 46 H 0.09 1.21 7.93 -51.93 -0.41 0.80 16 47 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 48 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 394.25 15.07 5.94 5.94 Total: -1.00 -34.95 394.25 -7.06 -42.01 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.22 Total: 10.29 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.69 Total: 7.96 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.53 Total: -58.70 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.15 Total: -21.78 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.95 -7.06 -42.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267197284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.656 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds