Wall clock time and date at job start Tue Mar 31 2020 20:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 N 1.46494 * 109.46705 * 119.99824 * 2 1 3 5 5 N 1.28446 * 125.19732 * 305.34303 * 4 2 1 6 6 C 1.30861 * 110.93168 * 180.31476 * 5 4 2 7 7 C 1.39677 * 107.86118 * 359.71699 * 6 5 4 8 8 C 1.36598 * 125.18815 * 125.17517 * 4 2 1 9 9 C 1.47166 * 126.88442 * 359.96119 * 8 4 2 10 10 O 1.21629 * 119.99684 * 354.34802 * 9 8 4 11 11 N 1.34774 * 120.00021 * 174.62628 * 9 8 4 12 12 C 1.46502 * 120.00269 * 184.80410 * 11 9 8 13 13 C 1.52994 * 109.47595 * 180.02562 * 12 11 9 14 14 N 1.46898 * 109.47499 * 180.02562 * 13 12 11 15 15 C 1.46901 * 111.00003 * 66.04496 * 14 13 12 16 16 C 1.46897 * 111.00162 * 189.99770 * 14 13 12 17 17 C 1.50701 * 109.46971 * 169.99489 * 16 14 13 18 18 O 1.21285 * 120.00332 * 0.02562 * 17 16 14 19 19 N 1.34778 * 120.00038 * 179.97438 * 17 16 14 20 20 C 1.37092 * 120.00297 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00024 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00181 * 180.02562 * 20 19 17 23 23 N 1.31419 * 120.00047 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00001 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47033 * 90.00563 * 24 22 20 26 26 H 1.48501 * 109.47266 * 210.00211 * 24 22 20 27 27 H 1.48496 * 109.47245 * 330.00410 * 24 22 20 28 28 H 1.09000 * 109.47572 * 299.99867 * 1 2 3 29 29 H 1.09007 * 109.47104 * 60.00142 * 1 2 3 30 30 H 1.08998 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47150 * 239.99803 * 2 1 3 32 32 H 1.08996 * 109.46757 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47223 * 299.99927 * 3 2 1 34 34 H 1.09000 * 109.46913 * 59.99730 * 3 2 1 35 35 H 1.08001 * 126.07187 * 179.69130 * 6 5 4 36 36 H 1.07996 * 127.32386 * 179.97438 * 7 6 5 37 37 H 0.96999 * 120.00317 * 4.80835 * 11 9 8 38 38 H 1.09000 * 109.46886 * 300.00771 * 12 11 9 39 39 H 1.09005 * 109.46672 * 60.00184 * 12 11 9 40 40 H 1.09008 * 109.46865 * 300.00181 * 13 12 11 41 41 H 1.08997 * 109.47299 * 60.00013 * 13 12 11 42 42 H 1.08994 * 109.47244 * 60.00137 * 15 14 13 43 43 H 1.08998 * 109.46891 * 180.02562 * 15 14 13 44 44 H 1.09000 * 109.46787 * 300.00081 * 15 14 13 45 45 H 1.08997 * 109.47453 * 290.00010 * 16 14 13 46 46 H 1.08998 * 109.46789 * 50.00125 * 16 14 13 47 47 H 0.97002 * 119.99669 * 0.02562 * 19 17 16 48 48 H 0.97001 * 119.99637 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.6925 -0.3992 2.4040 6 6 2.2962 -1.1895 3.2546 7 6 3.0844 -2.0823 2.5248 8 6 2.8869 -1.7447 1.1971 9 6 3.4959 -2.3885 0.0221 10 8 3.1596 -2.0531 -1.0976 11 7 4.4221 -3.3536 0.1869 12 6 5.1046 -3.9206 -0.9789 13 6 6.0984 -4.9888 -0.5185 14 7 6.7832 -5.5569 -1.6873 15 6 7.6301 -4.5507 -2.3418 16 6 7.5668 -6.7420 -1.3139 17 6 8.0512 -7.4370 -2.5603 18 8 7.7717 -6.9890 -3.6521 19 7 8.7961 -8.5560 -2.4616 20 6 9.2372 -9.1880 -3.5954 21 1 8.9876 -8.7895 -4.5677 22 6 10.0046 -10.3418 -3.4937 23 7 10.4279 -10.9474 -4.5805 24 14 10.4358 -11.0315 -1.8121 25 1 9.3852 -11.9909 -1.3863 26 1 11.7442 -11.7302 -1.8843 27 1 10.5207 -9.9220 -0.8289 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.2021 -1.1569 4.3300 36 1 3.7142 -2.8687 2.9137 37 1 4.6367 -3.6729 1.0773 38 1 4.3701 -4.3715 -1.6462 39 1 5.6386 -3.1305 -1.5070 40 1 6.8329 -4.5382 0.1491 41 1 5.5641 -5.7787 0.0094 42 1 8.3804 -4.1932 -1.6367 43 1 8.1249 -4.9976 -3.2041 44 1 7.0128 -3.7146 -2.6705 45 1 8.4228 -6.4368 -0.7120 46 1 6.9418 -7.4239 -0.7374 47 1 9.0199 -8.9141 -1.5884 48 1 10.9639 -11.7527 -4.5095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267197284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:41 Heat of formation + Delta-G solvation = -6.986867 kcal Electronic energy + Delta-G solvation = -28362.633840 eV Core-core repulsion = 24260.858406 eV Total energy + Delta-G solvation = -4101.775435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.56438 -40.69755 -40.35466 -38.22191 -36.81823 -36.02547 -35.54177 -33.72902 -32.33529 -31.31074 -30.44037 -29.11054 -28.32373 -27.03972 -25.62457 -24.24005 -23.73205 -22.39062 -21.93163 -21.22174 -20.62363 -20.15211 -18.91330 -17.77905 -17.41620 -17.17822 -16.94144 -16.72341 -16.67967 -16.18410 -15.90427 -15.78778 -15.42910 -15.30841 -14.98431 -14.86856 -14.72152 -14.38608 -14.22332 -14.05635 -13.99036 -13.69936 -13.20662 -13.15188 -13.08286 -12.93044 -12.57445 -12.53768 -12.44813 -12.38426 -12.35099 -12.12441 -11.95428 -11.78433 -11.44577 -11.09411 -10.42724 -10.35157 -10.20642 -10.09190 -9.96836 -9.22347 -8.38655 -5.99468 0.20919 1.31008 1.32040 1.38374 1.46967 1.68058 1.99861 2.00710 2.12497 2.25722 2.74958 3.17370 3.28739 3.47388 3.55033 3.84424 3.84930 3.97871 4.07776 4.13702 4.15461 4.18344 4.38073 4.46806 4.49080 4.55691 4.57860 4.60893 4.64378 4.65090 4.69333 4.80881 4.87796 4.88412 4.95991 5.09164 5.11734 5.23177 5.25188 5.55628 5.59871 5.78983 5.89339 6.01075 6.16388 6.34661 6.62896 6.92073 7.00246 7.12137 7.43503 8.01904 8.79117 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028081 B = 0.001722 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.883042 B =16251.708648 C =16882.237598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.118 3.882 3 C -0.151 4.151 4 N -0.259 5.259 5 N -0.295 5.295 6 C -0.011 4.011 7 C -0.173 4.173 8 C -0.066 4.066 9 C 0.589 3.411 10 O -0.576 6.576 11 N -0.693 5.693 12 C 0.130 3.870 13 C 0.053 3.947 14 N -0.543 5.543 15 C 0.023 3.977 16 C 0.057 3.943 17 C 0.449 3.551 18 O -0.607 6.607 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.228 1.228 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.216 0.784 36 H 0.196 0.804 37 H 0.421 0.579 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.105 0.895 42 H 0.040 0.960 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.127 0.873 47 H 0.390 0.610 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.969 20.361 23.839 34.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 C -0.209 4.209 4 N -0.048 5.048 5 N -0.127 5.127 6 C -0.186 4.186 7 C -0.201 4.201 8 C -0.194 4.194 9 C 0.376 3.624 10 O -0.456 6.456 11 N -0.345 5.345 12 C 0.006 3.994 13 C -0.075 4.075 14 N -0.268 5.268 15 C -0.125 4.125 16 C -0.073 4.073 17 C 0.237 3.763 18 O -0.491 6.491 19 N -0.234 5.234 20 C -0.456 4.456 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.578 5.578 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.203 1.203 27 H -0.151 1.151 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.213 0.787 37 H 0.259 0.741 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.145 0.855 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.408 21.567 21.659 34.691 hybrid contribution 1.729 -1.325 0.797 2.319 sum -14.680 20.242 22.455 33.608 Atomic orbital electron populations 1.22046 0.91606 1.02644 1.04495 1.22195 0.97102 0.94945 0.83972 1.22079 1.01087 0.93289 1.04462 1.46169 1.30520 1.22231 1.05914 1.73123 1.23551 1.25938 0.90137 1.24206 0.98218 0.94916 1.01241 1.22721 1.04347 1.03760 0.89313 1.21493 1.03728 0.98026 0.96185 1.17117 0.79090 0.79598 0.86635 1.90741 1.63026 1.65128 1.26711 1.45331 1.39501 1.38005 1.11706 1.21200 0.94923 0.95916 0.87365 1.22254 0.96482 0.97516 0.91250 1.61280 1.31539 1.06585 1.27356 1.22476 0.96089 0.94670 0.99305 1.21836 0.98852 0.93372 0.93289 1.20990 0.81283 0.82092 0.91961 1.90531 1.60556 1.66777 1.31272 1.42023 1.48752 1.25053 1.07613 1.18983 1.31382 1.08110 0.87116 0.92883 1.26152 0.96074 0.96134 1.03274 1.69820 1.36775 1.20198 1.30990 0.85340 0.78755 0.79883 0.77362 1.18149 1.20305 1.15104 0.91121 0.88305 0.93161 0.86369 0.93178 0.88250 0.91295 0.76726 0.78712 0.74089 0.92181 0.91959 0.91443 0.87699 0.94165 0.92915 0.90930 0.89783 0.85535 0.77436 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.30 71.98 0.67 -1.48 16 2 C 0.12 2.10 3.56 45.00 0.16 2.26 16 3 C -0.15 -2.16 9.45 71.98 0.68 -1.48 16 4 N -0.26 -5.09 3.09 -314.28 -0.97 -6.07 16 5 N -0.29 -5.47 11.52 -57.14 -0.66 -6.13 16 6 C -0.01 -0.14 12.03 85.19 1.02 0.88 16 7 C -0.17 -2.04 10.50 22.66 0.24 -1.80 16 8 C -0.07 -1.22 6.96 40.79 0.28 -0.94 16 9 C 0.59 12.42 7.79 86.59 0.67 13.09 16 10 O -0.58 -16.41 14.40 -4.12 -0.06 -16.47 16 11 N -0.69 -10.36 5.54 -466.63 -2.59 -12.95 16 12 C 0.13 2.51 5.60 86.38 0.48 2.99 16 13 C 0.05 0.86 5.07 86.30 0.44 1.30 16 14 N -0.54 -14.76 4.50 -927.08 -4.17 -18.94 16 15 C 0.02 0.65 8.96 127.69 1.14 1.80 16 16 C 0.06 1.58 5.45 85.56 0.47 2.05 16 17 C 0.45 19.56 7.48 87.66 0.66 20.22 16 18 O -0.61 -33.07 13.91 -3.05 -0.04 -33.11 16 19 N -0.59 -27.10 5.09 -306.99 -1.56 -28.66 16 20 C -0.33 -18.94 10.16 84.04 0.85 -18.08 16 21 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 22 C -0.02 -1.00 5.50 84.92 0.47 -0.53 16 23 N -0.94 -56.38 13.96 21.66 0.30 -56.08 16 24 Si 0.97 37.88 27.74 68.60 1.90 39.78 16 25 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 26 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 28 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 29 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.12 2.57 5.33 -2.39 -0.01 2.56 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.22 1.21 8.06 -2.91 -0.02 1.18 16 36 H 0.20 0.68 7.58 -2.91 -0.02 0.66 16 37 H 0.42 3.09 7.50 -92.71 -0.70 2.40 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.36 6.55 -2.38 -0.02 1.35 16 40 H 0.07 0.80 8.12 -2.38 -0.02 0.78 16 41 H 0.10 1.29 7.93 -2.39 -0.02 1.27 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.05 2.03 5.82 -2.39 -0.01 2.02 16 44 H 0.07 1.93 6.47 -2.39 -0.02 1.91 16 45 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 46 H 0.13 2.66 7.93 -2.39 -0.02 2.64 16 47 H 0.39 14.47 5.76 -92.71 -0.53 13.94 16 48 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -85.55 394.25 0.10 -85.45 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.29 Total: 32.89 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 8.24 Total: 20.28 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -9.65 Total: -128.82 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -0.10 Total: -49.58 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 1.90 Total: 39.78 kcal Total: -85.55 0.10 -85.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267197284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.466 kcal (2) G-P(sol) polarization free energy of solvation -85.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds