Wall clock time and date at job start Tue Mar 31 2020 20:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47297 * 2 1 4 4 N 1.46499 * 109.47329 * 119.99956 * 2 1 3 5 5 C 1.35847 * 126.13348 * 299.98156 * 4 2 1 6 6 N 1.30177 * 108.99933 * 179.77833 * 5 4 2 7 7 C 1.35749 * 108.86854 * 0.38428 * 6 5 4 8 8 C 1.47326 * 126.23645 * 179.88301 * 7 6 5 9 9 O 1.21623 * 120.00006 * 179.68401 * 8 7 6 10 10 N 1.34777 * 119.99919 * 359.68752 * 8 7 6 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47035 * 179.97438 * 11 10 8 13 13 N 1.46896 * 109.47243 * 179.97438 * 12 11 10 14 14 C 1.46900 * 111.00141 * 66.04370 * 13 12 11 15 15 C 1.46898 * 110.99884 * 189.99718 * 13 12 11 16 16 C 1.50710 * 109.46709 * 169.99692 * 15 13 12 17 17 O 1.21286 * 120.00152 * 0.02562 * 16 15 13 18 18 N 1.34777 * 119.99604 * 179.97438 * 16 15 13 19 19 C 1.37093 * 120.00027 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99632 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00446 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99715 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46913 * 60.00138 * 23 21 19 25 25 H 1.48499 * 109.47207 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46829 * 300.00084 * 23 21 19 27 27 C 1.35382 * 126.13727 * 120.00056 * 4 2 1 28 28 H 1.09001 * 109.47282 * 299.99923 * 1 2 3 29 29 H 1.08999 * 109.47220 * 59.99877 * 1 2 3 30 30 H 1.09009 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47282 * 240.00077 * 2 1 3 32 32 H 1.09001 * 109.46891 * 59.99838 * 3 2 1 33 33 H 1.08996 * 109.47641 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47086 * 300.00205 * 3 2 1 35 35 H 1.08000 * 125.50379 * 0.02562 * 5 4 2 36 36 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 38 38 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 39 39 H 1.09004 * 109.46930 * 299.99770 * 12 11 10 40 40 H 1.09004 * 109.47059 * 59.99372 * 12 11 10 41 41 H 1.08996 * 109.46988 * 59.99974 * 14 13 12 42 42 H 1.09000 * 109.47343 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.46850 * 300.00334 * 14 13 12 44 44 H 1.08994 * 109.47665 * 289.99774 * 15 13 12 45 45 H 1.08996 * 109.47097 * 50.00492 * 15 13 12 46 46 H 0.96998 * 120.00220 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99516 * 180.02562 * 22 21 19 48 48 H 1.08000 * 126.55796 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7685 -0.3366 2.4837 6 7 2.3600 -1.1814 3.2779 7 6 3.0174 -2.1025 2.5281 8 6 3.8150 -3.2315 3.0376 9 8 4.3539 -3.9954 2.2597 10 7 3.9474 -3.4179 4.3659 11 6 4.7411 -4.5403 4.8726 12 6 4.7304 -4.5229 6.4024 13 7 5.5256 -5.6486 6.9105 14 6 6.9452 -5.4868 6.5691 15 6 5.3475 -5.8071 8.3600 16 6 5.9732 -7.1043 8.8041 17 8 6.5145 -7.8255 7.9929 18 7 5.9320 -7.4625 10.1027 19 6 6.5016 -8.6422 10.5068 20 1 6.9829 -9.2848 9.7844 21 6 6.4596 -9.0113 11.8457 22 7 5.8735 -8.2297 12.7247 23 14 7.2351 -10.6191 12.3962 24 1 8.6844 -10.6058 12.0730 25 1 7.0556 -10.7791 13.8616 26 1 6.5811 -11.7509 11.6914 27 6 2.7999 -1.7958 1.2168 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.1718 0.5071 2.7977 36 1 3.5178 -2.8085 4.9863 37 1 4.3135 -5.4776 4.5165 38 1 5.7670 -4.4502 4.5157 39 1 5.1582 -3.5855 6.7581 40 1 3.7044 -4.6127 6.7596 41 1 7.3224 -4.5648 7.0113 42 1 7.5110 -6.3341 6.9567 43 1 7.0554 -5.4419 5.4856 44 1 5.8269 -4.9765 8.8780 45 1 4.2836 -5.8173 8.5964 46 1 5.4994 -6.8856 10.7515 47 1 5.8446 -8.4872 13.6594 48 1 3.1792 -2.3316 0.3591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267209776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:53 Heat of formation + Delta-G solvation = -5.260531 kcal Electronic energy + Delta-G solvation = -27710.780136 eV Core-core repulsion = 23609.079561 eV Total energy + Delta-G solvation = -4101.700575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62986 -39.42337 -38.54308 -36.73474 -36.51563 -34.50134 -33.73808 -31.66251 -31.19883 -30.29486 -29.07137 -28.08860 -27.59931 -25.40193 -24.24498 -23.61901 -22.80361 -21.10734 -20.91817 -19.94949 -19.09951 -17.98348 -17.79317 -16.75185 -16.26354 -16.09892 -15.86494 -15.56631 -15.24456 -14.87550 -14.68669 -14.55190 -14.31397 -14.27342 -13.98911 -13.73775 -13.60289 -13.38457 -13.20170 -13.04907 -12.90858 -12.83717 -12.17333 -12.05405 -11.99209 -11.74198 -11.46974 -11.31366 -11.19546 -10.94944 -10.86580 -10.62535 -10.40030 -10.20166 -10.17360 -10.13576 -9.42043 -9.13798 -8.85215 -8.40760 -7.93043 -7.81432 -6.36959 -3.77546 1.31323 2.10766 2.11593 3.12152 3.24077 3.29302 3.34220 3.43602 3.79011 3.96045 4.04110 4.10819 4.16674 4.21243 4.31537 4.36794 4.73959 4.79153 4.87286 4.92471 4.96201 4.99061 5.07817 5.17814 5.22091 5.26729 5.30500 5.35986 5.53004 5.68376 5.72663 5.77966 5.95104 5.98910 6.02441 6.07974 6.12981 6.33383 6.42877 6.61062 6.63675 7.27960 7.33482 7.41287 7.59808 7.62981 8.11320 8.22176 8.67245 9.23125 9.59667 10.11943 10.80792 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039041 B = 0.001468 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.030310 B =19064.619895 C =19397.056597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.124 3.876 3 C -0.164 4.164 4 N -0.452 5.452 5 C 0.187 3.813 6 N -0.463 5.463 7 C -0.062 4.062 8 C 0.603 3.397 9 O -0.545 6.545 10 N -0.714 5.714 11 C 0.123 3.877 12 C 0.045 3.955 13 N -0.515 5.515 14 C 0.018 3.982 15 C 0.047 3.953 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.035 3.965 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.208 0.792 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.015 0.985 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 23.837 -23.531 35.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 C -0.222 4.222 4 N -0.135 5.135 5 C -0.096 4.096 6 N -0.182 5.182 7 C -0.191 4.191 8 C 0.389 3.611 9 O -0.422 6.422 10 N -0.365 5.365 11 C -0.001 4.001 12 C -0.084 4.084 13 N -0.239 5.239 14 C -0.130 4.130 15 C -0.084 4.084 16 C 0.230 3.770 17 O -0.460 6.460 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.104 4.104 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.224 0.776 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.034 0.966 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.597 22.389 -23.861 34.715 hybrid contribution 0.054 0.740 0.655 0.990 sum -11.543 23.129 -23.206 34.738 Atomic orbital electron populations 1.22197 0.92723 1.03599 1.03712 1.21596 0.95841 0.94239 0.86129 1.22195 1.02420 0.93889 1.03715 1.45666 1.37657 1.21871 1.08305 1.25003 1.03969 1.01956 0.78721 1.70618 1.10883 1.04035 1.32654 1.20573 1.07527 1.00431 0.90569 1.16848 0.79372 0.82659 0.82250 1.90814 1.48700 1.46087 1.56647 1.45705 1.52923 1.31106 1.06815 1.21349 0.96007 0.89378 0.93370 1.22250 0.99313 0.92811 0.94052 1.61443 1.09531 1.40051 1.12898 1.22627 0.88217 1.01221 1.00916 1.21866 1.01625 0.97251 0.87687 1.19725 0.85724 0.88299 0.83279 1.90488 1.48568 1.54598 1.52354 1.41850 1.50937 1.20890 1.06475 1.19656 1.32672 0.97407 0.93086 0.87957 1.25248 0.97601 0.99461 0.95610 1.69610 1.43884 1.37831 1.03108 0.85922 0.79539 0.81564 0.77210 1.19947 1.21028 1.19905 1.22614 0.97459 0.90627 0.99741 0.91370 0.90125 0.91456 0.87773 0.91379 0.91487 0.90120 0.77596 0.75802 0.90176 0.91136 0.94489 0.90215 0.96643 0.88427 0.91821 0.93350 0.89298 0.77499 0.91886 0.79596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.28 9.24 37.16 0.34 0.06 16 2 C 0.12 0.33 3.57 -67.93 -0.24 0.08 16 3 C -0.16 -0.27 9.24 37.16 0.34 0.07 16 4 N -0.45 -2.74 2.59 -111.25 -0.29 -3.02 16 5 C 0.19 1.31 11.53 -89.90 -1.04 0.27 16 6 N -0.46 -4.84 11.01 -11.03 -0.12 -4.96 16 7 C -0.06 -0.71 6.98 -83.09 -0.58 -1.29 16 8 C 0.60 8.39 7.81 -12.56 -0.10 8.29 16 9 O -0.55 -9.19 16.88 5.26 0.09 -9.10 16 10 N -0.71 -8.95 5.55 -61.41 -0.34 -9.29 16 11 C 0.12 1.68 5.60 -4.04 -0.02 1.65 16 12 C 0.04 0.60 5.07 -3.83 -0.02 0.58 16 13 N -0.52 -8.94 4.50 -244.37 -1.10 -10.04 16 14 C 0.02 0.31 8.96 60.06 0.54 0.84 16 15 C 0.05 0.86 5.45 -4.97 -0.03 0.83 16 16 C 0.44 10.69 7.48 -10.98 -0.08 10.61 16 17 O -0.58 -15.80 13.91 5.55 0.08 -15.72 16 18 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 19 C -0.30 -8.43 9.68 -14.94 -0.14 -8.58 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 23 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.03 0.30 11.22 -16.64 -0.19 0.12 16 28 H 0.07 0.11 7.94 -51.93 -0.41 -0.31 16 29 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.07 0.20 8.14 -51.92 -0.42 -0.22 16 31 H 0.10 0.18 8.07 -51.93 -0.42 -0.24 16 32 H 0.07 0.10 7.94 -51.93 -0.41 -0.31 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 35 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.41 4.45 8.19 -40.82 -0.33 4.11 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.02 6.55 -51.93 -0.34 0.68 16 39 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 41 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.10 2.00 5.82 -51.93 -0.30 1.70 16 43 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 44 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 45 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 46 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 48 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 402.38 15.07 6.06 6.06 Total: -1.00 -35.72 402.38 -8.73 -44.45 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.44 Total: 9.89 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -1.31 Total: 14.04 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -1.18 Total: -65.95 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.17 Total: -24.82 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.72 -8.73 -44.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267209776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.190 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds