Wall clock time and date at job start Tue Mar 31 2020 20:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47089 * 2 1 4 4 H 1.09007 * 109.47052 * 55.37337 * 3 2 1 5 5 C 1.52996 * 109.47321 * 175.37645 * 3 2 1 6 6 N 1.46500 * 109.47170 * 175.00171 * 5 3 2 7 7 C 1.34780 * 119.99976 * 180.02562 * 6 5 3 8 8 O 1.21573 * 119.99942 * 359.97438 * 7 6 5 9 9 C 1.47713 * 119.99791 * 180.02562 * 7 6 5 10 10 N 1.31807 * 126.52052 * 0.14610 * 9 7 6 11 11 N 1.28466 * 110.07346 * 180.31772 * 10 9 7 12 12 H 0.97002 * 124.88449 * 179.69194 * 11 10 9 13 13 C 1.35037 * 110.23032 * 359.71572 * 11 10 9 14 14 C 1.50697 * 126.38429 * 180.02562 * 13 11 10 15 15 C 1.35362 * 107.22529 * 359.97438 * 13 11 10 16 16 C 1.50705 * 127.24335 * 180.02562 * 15 13 11 17 17 N 1.46900 * 109.46908 * 295.37896 * 3 2 1 18 18 C 1.46901 * 110.99969 * 302.88282 * 17 3 2 19 19 C 1.50693 * 109.47347 * 185.63827 * 18 17 3 20 20 O 1.21291 * 119.99897 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99957 * 179.97438 * 19 18 17 22 22 C 1.37097 * 119.99889 * 179.97438 * 21 19 18 23 23 H 1.08007 * 120.00124 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00273 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99618 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00145 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47336 * 0.02562 * 26 24 22 28 28 H 1.48509 * 109.47074 * 120.00055 * 26 24 22 29 29 H 1.48503 * 109.47061 * 239.99635 * 26 24 22 30 30 H 1.08998 * 109.46743 * 178.73511 * 1 2 3 31 31 H 1.09001 * 109.46848 * 298.72855 * 1 2 3 32 32 H 1.08996 * 109.47209 * 58.73503 * 1 2 3 33 33 H 1.08992 * 109.47645 * 240.00124 * 2 1 3 34 34 H 1.09001 * 109.47209 * 119.99776 * 2 1 3 35 35 H 1.08996 * 109.47217 * 54.99368 * 5 3 2 36 36 H 1.09004 * 109.47239 * 294.99955 * 5 3 2 37 37 H 0.96996 * 119.99719 * 359.97438 * 6 5 3 38 38 H 1.08999 * 109.47062 * 269.96950 * 14 13 11 39 39 H 1.08995 * 109.47309 * 29.96863 * 14 13 11 40 40 H 1.08999 * 109.46898 * 149.97583 * 14 13 11 41 41 H 1.09003 * 109.47029 * 90.00434 * 16 15 13 42 42 H 1.08996 * 109.47467 * 330.00328 * 16 15 13 43 43 H 1.09004 * 109.47180 * 210.00001 * 16 15 13 44 44 H 1.00897 * 111.00182 * 66.83718 * 17 3 2 45 45 H 1.09006 * 109.47184 * 305.63895 * 18 17 3 46 46 H 1.08996 * 109.46931 * 65.63393 * 18 17 3 47 47 H 0.96998 * 120.00498 * 0.02562 * 21 19 18 48 48 H 0.97000 * 119.99788 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6105 1.9798 0.8457 5 6 3.5655 1.4442 0.1163 6 7 4.0630 2.8169 -0.0035 7 6 5.3862 3.0629 0.0687 8 8 6.1669 2.1457 0.2337 9 6 5.8876 4.4471 -0.0516 10 7 5.1605 5.5323 -0.2280 11 7 5.9204 6.5659 -0.2963 12 1 5.6095 7.4752 -0.4280 13 6 7.2142 6.2042 -0.1589 14 6 8.4070 7.1249 -0.1815 15 6 7.2397 4.8607 0.0042 16 6 8.4532 3.9883 0.1977 17 7 1.6435 2.1020 -1.2513 18 6 2.1482 1.3651 -2.4176 19 6 1.8428 2.1410 -3.6728 20 8 1.2623 3.2036 -3.6027 21 7 2.2157 1.6547 -4.8732 22 6 1.9374 2.3604 -6.0152 23 1 1.4197 3.3062 -5.9529 24 6 2.3213 1.8588 -7.2528 25 7 2.9516 0.7082 -7.3286 26 14 1.9414 2.8199 -8.8088 27 1 1.2302 4.0744 -8.4546 28 1 3.2090 3.1507 -9.5083 29 1 1.0836 1.9990 -9.7008 30 1 -0.3633 -1.0274 -0.0227 31 1 -0.3633 0.4940 0.9012 32 1 -0.3633 0.5333 -0.8784 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.9912 0.8326 -0.6792 36 1 3.8566 1.0354 1.0839 37 1 3.4401 3.5486 -0.1356 38 1 8.7691 7.2252 -1.2047 39 1 8.1173 8.1043 0.1990 40 1 9.1973 6.7110 0.4446 41 1 8.6713 3.9000 1.2620 42 1 9.3068 4.4348 -0.3123 43 1 8.2592 2.9989 -0.2167 44 1 0.6419 2.2135 -1.2998 45 1 3.2263 1.2331 -2.3254 46 1 1.6657 0.3890 -2.4673 47 1 2.6803 0.8051 -4.9293 48 1 3.2193 0.3578 -8.1926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267800074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:53 Heat of formation + Delta-G solvation = -11.109209 kcal Electronic energy + Delta-G solvation = -29441.383836 eV Core-core repulsion = 25339.429644 eV Total energy + Delta-G solvation = -4101.954193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.75866 -39.47959 -38.44336 -37.19125 -34.17995 -33.85520 -33.43284 -32.50872 -31.71918 -31.11929 -29.12287 -28.15438 -26.55446 -26.18642 -24.56074 -24.04371 -22.60287 -20.43303 -20.04052 -19.70447 -19.00105 -17.87218 -17.66203 -16.82360 -16.76554 -16.03324 -15.67908 -15.47690 -14.92898 -14.61174 -14.21138 -14.17335 -14.05268 -13.83898 -13.71700 -13.44880 -13.26136 -13.11567 -13.01373 -12.85066 -12.50424 -12.44846 -12.26056 -12.04923 -11.86212 -11.72531 -11.47313 -11.31282 -11.06625 -10.82931 -10.80046 -10.70589 -10.32393 -10.18757 -9.88634 -9.47655 -9.37741 -8.83663 -8.71964 -8.44929 -8.01428 -7.91248 -6.37718 -3.78254 1.61593 1.99622 2.75870 3.18266 3.28276 3.32890 3.35751 3.56130 3.96422 4.13627 4.36342 4.47697 4.52052 4.68834 4.77338 4.91900 5.02895 5.16793 5.20219 5.21284 5.28148 5.29274 5.34351 5.48839 5.53030 5.62831 5.64702 5.66701 5.77276 5.80691 5.86238 5.91207 5.93281 6.05066 6.12739 6.13339 6.24323 6.32393 6.47701 6.61912 6.90915 7.20907 7.58850 7.62484 7.66049 7.93406 8.10754 8.40712 8.66064 9.22334 9.59504 10.11265 10.80249 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007755 B = 0.003444 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.894623 B = 8129.278265 C =10602.717495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.089 0.911 5 C 0.127 3.873 6 N -0.699 5.699 7 C 0.602 3.398 8 O -0.540 6.540 9 C -0.009 4.009 10 N -0.248 5.248 11 N -0.380 5.380 12 H 0.444 0.556 13 C 0.003 3.997 14 C -0.082 4.082 15 C -0.146 4.146 16 C -0.077 4.077 17 N -0.658 5.658 18 C 0.044 3.956 19 C 0.444 3.556 20 O -0.582 6.582 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.417 0.583 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.352 0.648 45 H 0.086 0.914 46 H 0.048 0.952 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 5.693 18.241 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.351 5.351 7 C 0.386 3.614 8 O -0.416 6.416 9 C -0.170 4.170 10 N -0.084 5.084 11 N -0.094 5.094 12 H 0.289 0.711 13 C -0.122 4.122 14 C -0.140 4.140 15 C -0.156 4.156 16 C -0.135 4.135 17 N -0.290 5.290 18 C -0.088 4.088 19 C 0.229 3.771 20 O -0.466 6.466 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.755 3.245 27 H -0.193 1.193 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.254 0.746 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.172 0.828 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.606 6.406 18.123 20.325 hybrid contribution -0.225 -0.289 -1.093 1.152 sum 6.382 6.117 17.030 19.188 Atomic orbital electron populations 1.21756 0.95313 1.01947 1.02010 1.22212 0.96727 0.97958 1.03102 1.21918 0.94269 0.93510 0.94044 0.89244 1.21430 0.92960 0.83487 1.01842 1.45662 1.06859 1.10381 1.72183 1.16862 0.82389 0.85513 0.76628 1.90745 1.56147 1.44241 1.50514 1.21824 0.91944 0.93009 1.10224 1.73612 1.22831 0.93741 1.18186 1.43196 1.03970 1.09336 1.52901 0.71130 1.21193 0.87262 0.95352 1.08427 1.20318 0.93247 0.96961 1.03522 1.20096 0.95088 0.92400 1.08029 1.20172 0.92384 0.99304 1.01642 1.60169 1.19410 1.49918 0.99522 1.21759 1.01211 0.95246 0.90628 1.19810 0.85112 0.87884 0.84284 1.90516 1.45909 1.23632 1.86528 1.41866 1.51689 1.21852 1.04838 1.19734 1.35013 1.04740 0.83209 0.87965 1.25249 0.96952 0.96423 0.99375 1.69625 1.39795 1.18721 1.26180 0.85823 0.78077 0.79533 0.81039 1.19275 1.20791 1.20779 0.92515 0.92587 0.92445 0.90963 0.91293 0.91221 0.91132 0.74598 0.90315 0.91208 0.89642 0.91677 0.92126 0.89772 0.82780 0.89543 0.93421 0.77546 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.70 37.16 0.36 -1.15 16 2 C -0.16 -1.65 5.10 -26.73 -0.14 -1.79 16 3 C 0.07 0.86 2.70 -67.71 -0.18 0.68 16 4 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 5 C 0.13 1.65 4.76 -4.04 -0.02 1.63 16 6 N -0.70 -10.31 5.39 -61.29 -0.33 -10.64 16 7 C 0.60 9.86 7.83 -12.39 -0.10 9.76 16 8 O -0.54 -9.76 15.11 5.30 0.08 -9.68 16 9 C -0.01 -0.14 7.13 -82.77 -0.59 -0.73 16 10 N -0.25 -3.55 11.92 33.42 0.40 -3.15 16 11 N -0.38 -4.07 6.83 33.50 0.23 -3.85 16 12 H 0.44 3.10 8.96 -190.44 -1.71 1.40 16 13 C 0.00 0.03 7.23 -82.21 -0.59 -0.56 16 14 C -0.08 -0.50 10.14 36.00 0.37 -0.14 16 15 C -0.15 -1.92 6.25 -104.40 -0.65 -2.58 16 16 C -0.08 -0.88 9.61 36.01 0.35 -0.54 16 17 N -0.66 -10.02 5.32 -107.99 -0.57 -10.59 16 18 C 0.04 0.78 5.31 -4.98 -0.03 0.75 16 19 C 0.44 10.61 7.83 -10.99 -0.09 10.53 16 20 O -0.58 -15.86 15.90 5.55 0.09 -15.77 16 21 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 22 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 23 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -25.06 13.05 55.50 0.72 -24.33 16 26 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.65 6.87 -51.93 -0.36 0.29 16 33 H 0.07 0.82 6.23 -51.93 -0.32 0.50 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.00 6.61 -51.93 -0.34 0.66 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.42 6.28 7.86 -40.82 -0.32 5.96 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.45 7.98 -51.93 -0.41 0.03 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.55 8.00 -51.93 -0.42 0.13 16 43 H 0.08 1.15 6.70 -51.93 -0.35 0.80 16 44 H 0.35 5.43 7.29 -39.29 -0.29 5.14 16 45 H 0.09 1.53 6.22 -51.93 -0.32 1.21 16 46 H 0.05 0.77 6.48 -51.93 -0.34 0.43 16 47 H 0.39 9.81 7.90 -40.82 -0.32 9.49 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -35.08 396.14 -8.44 -43.52 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -8.39 Total: 19.09 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.55 Total: 7.75 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: 0.39 Total: -67.30 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: 0.17 Total: -25.45 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.08 -8.44 -43.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267800074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.411 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds