Wall clock time and date at job start Tue Mar 31 2020 20:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47307 * 2 1 4 4 H 1.08997 * 109.46683 * 302.96570 * 3 2 1 5 5 C 1.53002 * 109.47057 * 182.96601 * 3 2 1 6 6 N 1.46495 * 109.46759 * 185.00169 * 5 3 2 7 7 C 1.34775 * 119.99755 * 180.02562 * 6 5 3 8 8 O 1.21569 * 120.00458 * 359.97438 * 7 6 5 9 9 C 1.47713 * 119.99860 * 179.97438 * 7 6 5 10 10 N 1.31807 * 126.52232 * 0.28509 * 9 7 6 11 11 N 1.28462 * 110.07767 * 180.12840 * 10 9 7 12 12 C 1.46501 * 124.88932 * 179.88241 * 11 10 9 13 13 C 1.35035 * 110.22946 * 359.62155 * 11 10 9 14 14 C 1.35358 * 107.23009 * 0.22489 * 13 11 10 15 15 C 1.50697 * 127.25293 * 180.02562 * 14 13 11 16 16 N 1.46903 * 109.47025 * 62.96310 * 3 2 1 17 17 C 1.46899 * 110.99757 * 65.52279 * 16 3 2 18 18 C 1.50704 * 109.46864 * 182.17837 * 17 16 3 19 19 O 1.21298 * 120.00033 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99842 * 179.97438 * 18 17 16 21 21 C 1.37107 * 119.99813 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99959 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99964 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00080 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99875 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47277 * 59.99928 * 25 23 21 27 27 H 1.48497 * 109.46981 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46897 * 299.99408 * 25 23 21 29 29 H 1.08995 * 109.47206 * 174.77838 * 1 2 3 30 30 H 1.09002 * 109.47469 * 294.78286 * 1 2 3 31 31 H 1.09005 * 109.46955 * 54.77612 * 1 2 3 32 32 H 1.08999 * 109.47318 * 239.99510 * 2 1 3 33 33 H 1.08997 * 109.46856 * 119.99578 * 2 1 3 34 34 H 1.08996 * 109.47296 * 64.99772 * 5 3 2 35 35 H 1.08996 * 109.46756 * 304.99586 * 5 3 2 36 36 H 0.97004 * 120.00595 * 359.97438 * 6 5 3 37 37 H 1.09007 * 109.47330 * 269.70379 * 12 11 10 38 38 H 1.08998 * 109.46606 * 29.69406 * 12 11 10 39 39 H 1.09000 * 109.47596 * 149.69663 * 12 11 10 40 40 H 1.08005 * 126.38819 * 180.25243 * 13 11 10 41 41 H 1.08998 * 109.47427 * 90.02491 * 15 14 13 42 42 H 1.08997 * 109.47458 * 210.02538 * 15 14 13 43 43 H 1.09003 * 109.46911 * 330.02559 * 15 14 13 44 44 H 1.00900 * 110.99715 * 189.47843 * 16 3 2 45 45 H 1.08998 * 109.47621 * 302.18137 * 17 16 3 46 46 H 1.08999 * 109.46994 * 62.18384 * 17 16 3 47 47 H 0.97000 * 120.00711 * 0.02562 * 20 18 17 48 48 H 0.96996 * 120.00175 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6340 1.9714 -0.8622 5 6 3.5683 1.4431 -0.0746 6 7 4.0624 2.8170 0.0455 7 6 5.3870 3.0625 0.0060 8 8 6.1718 2.1439 -0.1288 9 6 5.8853 4.4478 0.1266 10 7 5.1544 5.5336 0.2817 11 7 5.9116 6.5692 0.3484 12 6 5.4370 7.9449 0.5171 13 6 7.2084 6.2067 0.2463 14 6 7.2385 4.8610 0.1034 15 6 8.4566 3.9868 -0.0481 16 7 1.6097 2.1141 1.2337 17 6 2.2439 1.5077 2.4118 18 6 1.7387 2.1859 3.6591 19 8 0.9296 3.0856 3.5750 20 7 2.1852 1.7921 4.8682 21 6 1.7252 2.4088 6.0031 22 1 1.0048 3.2099 5.9281 23 6 2.1860 2.0032 7.2496 24 7 3.0622 1.0282 7.3409 25 14 1.5587 2.8430 8.7958 26 1 0.0857 2.6771 8.8864 27 1 2.1995 2.2298 9.9868 28 1 1.8918 4.2892 8.7434 29 1 -0.3633 -1.0233 -0.0935 30 1 -0.3634 0.4308 0.9330 31 1 -0.3633 0.5928 -0.8396 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8855 1.0251 -1.0299 35 1 3.9719 0.8394 0.7382 36 1 3.4363 3.5501 0.1528 37 1 5.2691 8.3940 -0.4619 38 1 4.5035 7.9406 1.0798 39 1 6.1852 8.5235 1.0588 40 1 8.0624 6.8673 0.2739 41 1 8.8000 3.6683 0.9362 42 1 8.2033 3.1109 -0.6454 43 1 9.2477 4.5488 -0.5446 44 1 1.7983 3.1044 1.1909 45 1 1.9988 0.4463 2.4506 46 1 3.3251 1.6286 2.3450 47 1 2.8321 1.0724 4.9357 48 1 3.3836 0.7447 8.2111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267803193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:56 Heat of formation + Delta-G solvation = 4.860198 kcal Electronic energy + Delta-G solvation = -29566.657614 eV Core-core repulsion = 25465.395907 eV Total energy + Delta-G solvation = -4101.261707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.80465 -39.69714 -38.41922 -37.17054 -34.11582 -34.03282 -33.83001 -32.03248 -31.87854 -31.13883 -28.98566 -28.16027 -26.89287 -26.16785 -24.24603 -23.62180 -22.19122 -20.82191 -20.41722 -19.86937 -19.00826 -17.86355 -17.84822 -16.79958 -16.52489 -16.44522 -15.84712 -15.40928 -15.12845 -14.48551 -14.36743 -14.22171 -14.01055 -13.75151 -13.63466 -13.48188 -13.45771 -13.34676 -13.04715 -12.78538 -12.62504 -12.55239 -12.19549 -12.09917 -11.85259 -11.60000 -11.41881 -11.23403 -10.98575 -10.91538 -10.80756 -10.51806 -10.41964 -10.17575 -10.02246 -9.45880 -9.41905 -9.10029 -8.83754 -8.43561 -8.02771 -7.91419 -6.37399 -3.78239 1.49339 1.96046 2.27480 3.12474 3.21946 3.27313 3.31642 3.41029 3.96281 4.12362 4.16055 4.37963 4.56087 4.67954 4.73555 4.75767 4.93851 5.05476 5.09513 5.16472 5.18947 5.25515 5.31376 5.41154 5.42833 5.58284 5.65076 5.71920 5.84028 5.86472 5.87835 5.97592 6.05391 6.06659 6.13577 6.28366 6.35406 6.36732 6.39138 6.59576 6.60512 7.21149 7.39054 7.58446 7.62283 7.77929 8.10208 8.20600 8.65917 9.21924 9.59285 10.10979 10.80354 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007703 B = 0.003518 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.972145 B = 7957.918214 C =10077.158402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.089 0.911 5 C 0.080 3.920 6 N -0.716 5.716 7 C 0.607 3.393 8 O -0.531 6.531 9 C -0.019 4.019 10 N -0.256 5.256 11 N -0.282 5.282 12 C 0.086 3.914 13 C -0.026 4.026 14 C -0.145 4.145 15 C -0.078 4.078 16 N -0.652 5.652 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.275 1.275 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.405 0.595 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.181 0.819 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.346 0.654 45 H 0.089 0.911 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.925 7.585 -17.853 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.107 0.893 5 C -0.045 4.045 6 N -0.369 5.369 7 C 0.392 3.608 8 O -0.406 6.406 9 C -0.179 4.179 10 N -0.092 5.092 11 N -0.070 5.070 12 C -0.054 4.054 13 C -0.168 4.168 14 C -0.155 4.155 15 C -0.136 4.136 16 N -0.284 5.284 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.119 0.881 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.240 0.760 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.198 0.802 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.166 0.834 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.285 7.567 -17.644 20.200 hybrid contribution 1.603 0.580 0.900 1.928 sum 7.888 8.147 -16.744 20.223 Atomic orbital electron populations 1.21615 0.94643 1.00510 1.03091 1.21499 0.97315 0.94284 1.01997 1.21988 0.90302 0.97203 0.93978 0.89335 1.22234 0.96570 0.82870 1.02834 1.45803 1.06993 1.10023 1.74079 1.16828 0.82140 0.85622 0.76194 1.90762 1.55740 1.44180 1.49897 1.21801 0.92092 0.92739 1.11299 1.73513 1.23880 0.93375 1.18443 1.45261 1.04287 1.07140 1.50290 1.22205 1.02999 0.76173 1.04026 1.22609 0.88225 0.96292 1.09707 1.20380 0.94956 0.93080 1.07059 1.20172 0.92381 0.98509 1.02549 1.60232 1.60754 1.07545 0.99905 1.21772 0.96660 0.99951 0.90502 1.19808 0.86060 0.86984 0.84329 1.90514 1.36730 1.33007 1.86538 1.41851 1.39830 1.33767 1.04611 1.19639 1.23435 1.16637 0.83180 0.88052 1.25248 0.96605 0.96744 0.99309 1.69607 1.30766 1.27975 1.25935 0.85937 0.78962 0.79175 0.80237 1.19887 1.20984 1.20016 0.93572 0.91028 0.93223 0.91792 0.91439 0.90972 0.90649 0.75959 0.89696 0.88192 0.88586 0.80191 0.91337 0.89978 0.92109 0.83438 0.89309 0.93510 0.77513 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.71 37.16 0.36 -1.31 16 2 C -0.11 -1.27 5.29 -26.73 -0.14 -1.41 16 3 C 0.08 0.92 2.73 -67.71 -0.18 0.73 16 4 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 5 C 0.08 1.01 4.47 -4.04 -0.02 0.99 16 6 N -0.72 -9.78 5.31 -61.30 -0.33 -10.11 16 7 C 0.61 9.49 7.82 -12.39 -0.10 9.39 16 8 O -0.53 -9.33 15.12 5.31 0.08 -9.25 16 9 C -0.02 -0.28 7.13 -82.76 -0.59 -0.88 16 10 N -0.26 -3.50 11.67 33.42 0.39 -3.11 16 11 N -0.28 -2.98 3.70 -68.12 -0.25 -3.23 16 12 C 0.09 0.50 11.31 59.85 0.68 1.17 16 13 C -0.03 -0.26 11.40 -17.17 -0.20 -0.45 16 14 C -0.14 -1.83 6.25 -104.40 -0.65 -2.48 16 15 C -0.08 -0.86 9.93 36.00 0.36 -0.51 16 16 N -0.65 -10.18 5.38 -107.99 -0.58 -10.76 16 17 C 0.04 0.79 5.32 -4.97 -0.03 0.76 16 18 C 0.44 10.65 7.82 -10.99 -0.09 10.56 16 19 O -0.58 -15.93 15.83 5.54 0.09 -15.84 16 20 N -0.56 -14.68 5.29 -10.96 -0.06 -14.74 16 21 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -25.08 13.05 55.50 0.72 -24.36 16 25 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.06 6.68 -51.93 -0.35 0.71 16 36 H 0.40 5.31 6.96 -40.82 -0.28 5.03 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.30 8.13 -51.93 -0.42 -0.12 16 40 H 0.18 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.03 6.72 -51.93 -0.35 0.69 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.35 5.61 7.24 -39.29 -0.28 5.33 16 45 H 0.09 1.50 6.30 -51.93 -0.33 1.17 16 46 H 0.05 0.83 6.41 -51.93 -0.33 0.50 16 47 H 0.39 9.89 7.90 -40.82 -0.32 9.57 16 48 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -35.42 397.91 -6.94 -42.36 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -7.15 Total: 18.21 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.84 Total: 8.44 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -0.10 Total: -66.30 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.17 Total: -25.09 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.42 -6.94 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267803193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.218 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds