Wall clock time and date at job start Tue Mar 31 2020 20:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 H 1.09005 * 109.46878 * 305.61645 * 3 2 1 5 5 C 1.53000 * 109.46971 * 65.61337 * 3 2 1 6 6 N 1.46499 * 109.46958 * 175.00110 * 5 3 2 7 7 C 1.34781 * 120.00071 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00140 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99830 * 179.97438 * 7 6 5 10 10 C 1.50707 * 109.47023 * 179.97438 * 9 7 6 11 11 C 1.34665 * 126.58960 * 85.02238 * 10 9 7 12 12 N 1.34133 * 108.01988 * 179.73920 * 11 10 9 13 13 C 1.30496 * 109.25348 * 359.97438 * 12 11 10 14 14 N 1.35040 * 108.70077 * 0.02562 * 13 12 11 15 15 C 1.46503 * 126.39580 * 180.02562 * 14 13 12 16 16 N 1.46897 * 109.47248 * 185.61665 * 3 2 1 17 17 C 1.46899 * 111.00237 * 85.96888 * 16 3 2 18 18 C 1.50701 * 109.47075 * 174.53504 * 17 16 3 19 19 O 1.21287 * 120.00381 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99714 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99652 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00125 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99665 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00173 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99675 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47155 * 89.99574 * 25 23 21 27 27 H 1.48506 * 109.47003 * 209.99669 * 25 23 21 28 28 H 1.48499 * 109.47418 * 329.99294 * 25 23 21 29 29 H 1.08992 * 109.47049 * 183.34241 * 1 2 3 30 30 H 1.09006 * 109.46675 * 303.33901 * 1 2 3 31 31 H 1.08999 * 109.47123 * 63.33873 * 1 2 3 32 32 H 1.09003 * 109.47063 * 240.00554 * 2 1 3 33 33 H 1.08997 * 109.47521 * 119.99881 * 2 1 3 34 34 H 1.08998 * 109.46715 * 55.00437 * 5 3 2 35 35 H 1.08994 * 109.47100 * 294.99765 * 5 3 2 36 36 H 0.97009 * 120.00150 * 359.97438 * 6 5 3 37 37 H 1.09002 * 109.47499 * 60.00405 * 9 7 6 38 38 H 1.09000 * 109.47694 * 299.99740 * 9 7 6 39 39 H 1.08004 * 125.99113 * 359.74260 * 11 10 9 40 40 H 1.08003 * 125.64982 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47099 * 269.95389 * 15 14 13 42 42 H 1.09005 * 109.47005 * 29.95497 * 15 14 13 43 43 H 1.08996 * 109.47577 * 149.95439 * 15 14 13 44 44 H 1.00903 * 111.00064 * 322.01760 * 16 3 2 45 45 H 1.09003 * 109.47157 * 294.53378 * 17 16 3 46 46 H 1.08999 * 109.47146 * 54.53346 * 17 16 3 47 47 H 0.96995 * 119.99972 * 0.02562 * 20 18 17 48 48 H 0.96994 * 120.00160 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9846 -0.8355 5 6 1.6485 2.1219 1.3138 6 7 2.2378 3.4621 1.3651 7 6 2.0266 4.2506 2.4376 8 8 1.3482 3.8508 3.3599 9 6 2.6333 5.6290 2.4905 10 6 2.2476 6.2983 3.7846 11 6 2.8731 6.1732 4.9705 12 7 2.2228 6.9326 5.8647 13 6 1.2184 7.5239 5.2777 14 7 1.1979 7.1550 3.9788 15 6 0.2329 7.5910 2.9665 16 7 3.5027 1.4448 -0.1355 17 6 3.9006 1.3938 -1.5487 18 6 5.3975 1.5328 -1.6544 19 8 6.0669 1.6620 -0.6514 20 7 5.9923 1.5134 -2.8638 21 6 7.3540 1.6403 -2.9600 22 1 7.9499 1.7562 -2.0668 23 6 7.9671 1.6209 -4.2068 24 7 7.2419 1.4804 -5.2935 25 14 9.8223 1.7945 -4.3379 26 1 10.4504 0.4500 -4.2838 27 1 10.1683 2.4512 -5.6242 28 1 10.3232 2.6206 -3.2101 29 1 -0.3633 -1.0258 0.0599 30 1 -0.3633 0.5648 0.8586 31 1 -0.3633 0.4611 -0.9184 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0167 1.5307 2.1523 35 1 0.5629 2.1999 1.3731 36 1 2.7808 3.7818 0.6275 37 1 2.2652 6.2205 1.6522 38 1 3.7189 5.5508 2.4311 39 1 3.7455 5.5676 5.1672 40 1 0.5190 8.1962 5.7522 41 1 -0.6126 6.9033 2.9503 42 1 -0.1191 8.5940 3.2082 43 1 0.7123 7.6004 1.9876 44 1 3.9152 0.6843 0.3838 45 1 3.5929 0.4406 -1.9787 46 1 3.4209 2.2087 -2.0908 47 1 5.4568 1.4104 -3.6660 48 1 7.6699 1.4664 -6.1638 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267826338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:45 Heat of formation + Delta-G solvation = -16.531975 kcal Electronic energy + Delta-G solvation = -28648.544601 eV Core-core repulsion = 24546.355260 eV Total energy + Delta-G solvation = -4102.189342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21485 -39.65869 -38.50877 -37.28404 -34.21532 -34.16459 -33.85641 -32.59390 -32.29352 -31.24685 -28.75770 -27.31446 -27.10308 -25.85928 -24.22886 -23.38926 -21.56232 -20.98244 -20.90185 -19.75351 -19.31583 -17.96321 -17.36417 -17.12303 -16.49554 -15.96780 -15.73711 -15.56087 -15.19507 -15.05740 -14.60555 -14.47478 -14.14479 -13.91980 -13.89090 -13.60277 -13.36317 -13.27103 -13.10309 -13.06735 -12.90833 -12.76093 -12.34726 -12.18467 -12.07217 -11.76870 -11.55401 -11.48467 -11.25651 -11.08019 -10.79629 -10.43120 -10.26347 -10.07056 -9.95982 -9.66503 -9.55525 -8.98656 -8.58207 -8.43246 -8.13609 -8.01271 -6.46701 -3.87571 1.86020 2.57554 2.66059 3.05001 3.14338 3.23586 3.29215 3.34999 3.84947 3.98842 4.23909 4.35955 4.42063 4.58831 4.65418 4.68972 4.73578 4.84383 4.94860 4.98967 5.04546 5.08371 5.15537 5.21499 5.23554 5.30117 5.40020 5.52260 5.59852 5.67054 5.71401 5.77869 5.80486 5.84012 5.98160 6.05179 6.19726 6.21062 6.47411 6.64655 7.05057 7.06765 7.50231 7.50646 7.57923 7.98163 8.01162 8.25535 8.55939 9.13231 9.49033 10.00323 10.70934 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.002336 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.816033 B =11981.026742 C =13853.685033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.153 4.153 3 C 0.072 3.928 4 H 0.083 0.917 5 C 0.135 3.865 6 N -0.711 5.711 7 C 0.511 3.489 8 O -0.540 6.540 9 C -0.067 4.067 10 C -0.004 4.004 11 C -0.009 4.009 12 N -0.494 5.494 13 C 0.178 3.822 14 N -0.456 5.456 15 C 0.071 3.929 16 N -0.662 5.662 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.581 6.581 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.410 0.590 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.168 0.832 40 H 0.203 0.797 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.353 0.647 45 H 0.045 0.955 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.728 7.516 8.610 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.192 4.192 3 C -0.039 4.039 4 H 0.102 0.898 5 C 0.010 3.990 6 N -0.363 5.363 7 C 0.296 3.704 8 O -0.418 6.418 9 C -0.108 4.108 10 C -0.118 4.118 11 C -0.157 4.157 12 N -0.212 5.212 13 C -0.104 4.104 14 N -0.140 5.140 15 C -0.072 4.072 16 N -0.294 5.294 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.464 6.464 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.115 0.885 38 H 0.139 0.861 39 H 0.185 0.815 40 H 0.220 0.780 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.173 0.827 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.521 8.131 10.500 21.985 hybrid contribution 0.344 -0.947 -2.274 2.487 sum -17.177 7.184 8.227 20.355 Atomic orbital electron populations 1.21785 0.95325 1.01865 1.01985 1.22229 0.96873 0.97271 1.02853 1.21924 0.89165 0.95192 0.97573 0.89836 1.21344 0.97219 0.82956 0.97441 1.45796 1.53308 1.15846 1.21387 1.20419 0.80941 0.86788 0.82211 1.90719 1.39446 1.75013 1.36577 1.20040 1.03682 0.93034 0.94022 1.20426 0.93315 1.00160 0.97915 1.22014 1.02560 1.02627 0.88493 1.70260 1.07139 1.11385 1.32372 1.24851 1.00698 1.04034 0.80787 1.45187 1.22958 1.35359 1.10475 1.22029 0.92285 1.01335 0.91516 1.60124 1.05801 1.52986 1.10462 1.21725 0.96094 1.00849 0.89618 1.19797 0.88504 0.84735 0.84467 1.90538 1.65213 1.54792 1.35903 1.41874 1.08065 1.63669 1.06477 1.19694 0.82197 1.46816 0.94164 0.87919 1.25259 1.00551 0.97304 0.94812 1.69602 1.36341 1.50195 0.98191 0.85866 0.82225 0.78540 0.77726 1.20415 1.20923 1.19368 0.92691 0.92310 0.92641 0.91301 0.91306 0.91607 0.91410 0.75407 0.88479 0.86108 0.81490 0.78029 0.90489 0.89355 0.89772 0.82746 0.93728 0.89696 0.77530 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.75 37.16 0.36 -0.84 16 2 C -0.15 -1.40 5.38 -26.73 -0.14 -1.55 16 3 C 0.07 0.74 2.21 -67.71 -0.15 0.59 16 4 H 0.08 0.80 7.70 -51.93 -0.40 0.40 16 5 C 0.13 1.47 5.02 -4.04 -0.02 1.45 16 6 N -0.71 -7.89 5.39 -60.30 -0.32 -8.21 16 7 C 0.51 6.29 7.82 -10.99 -0.09 6.20 16 8 O -0.54 -8.76 16.03 5.56 0.09 -8.67 16 9 C -0.07 -0.64 6.04 -29.03 -0.18 -0.82 16 10 C 0.00 -0.04 5.45 -81.60 -0.44 -0.49 16 11 C -0.01 -0.12 11.79 -17.81 -0.21 -0.33 16 12 N -0.49 -6.90 11.25 -14.67 -0.16 -7.06 16 13 C 0.18 1.89 12.56 -90.38 -1.14 0.76 16 14 N -0.46 -4.51 3.15 -121.36 -0.38 -4.89 16 15 C 0.07 0.39 11.01 59.85 0.66 1.05 16 16 N -0.66 -8.99 5.22 -107.99 -0.56 -9.56 16 17 C 0.05 0.76 5.99 -4.98 -0.03 0.73 16 18 C 0.44 9.63 7.83 -10.98 -0.09 9.54 16 19 O -0.58 -14.87 15.90 5.55 0.09 -14.78 16 20 N -0.56 -13.57 5.29 -10.96 -0.06 -13.63 16 21 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 22 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.85 13.05 55.50 0.72 -23.13 16 25 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.46 6.55 -51.93 -0.34 0.12 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.67 7.50 -51.93 -0.39 0.28 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.71 6.76 -51.93 -0.35 0.36 16 36 H 0.41 4.33 8.14 -40.82 -0.33 3.99 16 37 H 0.10 0.67 7.08 -51.93 -0.37 0.31 16 38 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.17 2.08 8.06 -52.48 -0.42 1.65 16 40 H 0.20 1.30 8.06 -52.48 -0.42 0.88 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.37 7.11 -51.93 -0.37 0.00 16 44 H 0.35 5.20 8.37 -39.29 -0.33 4.87 16 45 H 0.04 0.63 7.54 -51.93 -0.39 0.24 16 46 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 47 H 0.39 9.00 7.90 -40.82 -0.32 8.68 16 48 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 403.33 15.07 6.08 6.08 Total: -1.00 -35.57 403.33 -8.56 -44.13 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -7.32 Total: 15.60 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -1.70 Total: 8.59 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -0.77 Total: -66.48 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.18 Total: -23.45 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.57 -8.56 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267826338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.597 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds