Wall clock time and date at job start Tue Mar 31 2020 20:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 H 1.09005 * 109.46878 * 305.61645 * 3 2 1 5 5 C 1.53000 * 109.46971 * 65.61337 * 3 2 1 6 6 N 1.46499 * 109.46958 * 175.00110 * 5 3 2 7 7 C 1.34781 * 120.00071 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00140 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99830 * 179.97438 * 7 6 5 10 10 C 1.50707 * 109.47023 * 179.97438 * 9 7 6 11 11 C 1.34665 * 126.58960 * 85.02238 * 10 9 7 12 12 N 1.34133 * 108.01988 * 179.73920 * 11 10 9 13 13 C 1.30496 * 109.25348 * 359.97438 * 12 11 10 14 14 N 1.35040 * 108.70077 * 0.02562 * 13 12 11 15 15 C 1.46503 * 126.39580 * 180.02562 * 14 13 12 16 16 N 1.46897 * 109.47248 * 185.61665 * 3 2 1 17 17 C 1.46899 * 111.00237 * 85.96888 * 16 3 2 18 18 C 1.50701 * 109.47075 * 174.53504 * 17 16 3 19 19 O 1.21287 * 120.00381 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99714 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99652 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00125 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99665 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00173 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99675 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47155 * 89.99574 * 25 23 21 27 27 H 1.48506 * 109.47003 * 209.99669 * 25 23 21 28 28 H 1.48499 * 109.47418 * 329.99294 * 25 23 21 29 29 H 1.08992 * 109.47049 * 183.34241 * 1 2 3 30 30 H 1.09006 * 109.46675 * 303.33901 * 1 2 3 31 31 H 1.08999 * 109.47123 * 63.33873 * 1 2 3 32 32 H 1.09003 * 109.47063 * 240.00554 * 2 1 3 33 33 H 1.08997 * 109.47521 * 119.99881 * 2 1 3 34 34 H 1.08998 * 109.46715 * 55.00437 * 5 3 2 35 35 H 1.08994 * 109.47100 * 294.99765 * 5 3 2 36 36 H 0.97009 * 120.00150 * 359.97438 * 6 5 3 37 37 H 1.09002 * 109.47499 * 60.00405 * 9 7 6 38 38 H 1.09000 * 109.47694 * 299.99740 * 9 7 6 39 39 H 1.08004 * 125.99113 * 359.74260 * 11 10 9 40 40 H 1.08003 * 125.64982 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47099 * 269.95389 * 15 14 13 42 42 H 1.09005 * 109.47005 * 29.95497 * 15 14 13 43 43 H 1.08996 * 109.47577 * 149.95439 * 15 14 13 44 44 H 1.00903 * 111.00064 * 322.01760 * 16 3 2 45 45 H 1.09003 * 109.47157 * 294.53378 * 17 16 3 46 46 H 1.08999 * 109.47146 * 54.53346 * 17 16 3 47 47 H 0.96995 * 119.99972 * 0.02562 * 20 18 17 48 48 H 0.96994 * 120.00160 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9846 -0.8355 5 6 1.6485 2.1219 1.3138 6 7 2.2378 3.4621 1.3651 7 6 2.0266 4.2506 2.4376 8 8 1.3482 3.8508 3.3599 9 6 2.6333 5.6290 2.4905 10 6 2.2476 6.2983 3.7846 11 6 2.8731 6.1732 4.9705 12 7 2.2228 6.9326 5.8647 13 6 1.2184 7.5239 5.2777 14 7 1.1979 7.1550 3.9788 15 6 0.2329 7.5910 2.9665 16 7 3.5027 1.4448 -0.1355 17 6 3.9006 1.3938 -1.5487 18 6 5.3975 1.5328 -1.6544 19 8 6.0669 1.6620 -0.6514 20 7 5.9923 1.5134 -2.8638 21 6 7.3540 1.6403 -2.9600 22 1 7.9499 1.7562 -2.0668 23 6 7.9671 1.6209 -4.2068 24 7 7.2419 1.4804 -5.2935 25 14 9.8223 1.7945 -4.3379 26 1 10.4504 0.4500 -4.2838 27 1 10.1683 2.4512 -5.6242 28 1 10.3232 2.6206 -3.2101 29 1 -0.3633 -1.0258 0.0599 30 1 -0.3633 0.5648 0.8586 31 1 -0.3633 0.4611 -0.9184 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0167 1.5307 2.1523 35 1 0.5629 2.1999 1.3731 36 1 2.7808 3.7818 0.6275 37 1 2.2652 6.2205 1.6522 38 1 3.7189 5.5508 2.4311 39 1 3.7455 5.5676 5.1672 40 1 0.5190 8.1962 5.7522 41 1 -0.6126 6.9033 2.9503 42 1 -0.1191 8.5940 3.2082 43 1 0.7123 7.6004 1.9876 44 1 3.9152 0.6843 0.3838 45 1 3.5929 0.4406 -1.9787 46 1 3.4209 2.2087 -2.0908 47 1 5.4568 1.4104 -3.6660 48 1 7.6699 1.4664 -6.1638 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267826338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:44 Heat of formation + Delta-G solvation = -43.130833 kcal Electronic energy + Delta-G solvation = -28649.698014 eV Core-core repulsion = 24546.355260 eV Total energy + Delta-G solvation = -4103.342755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.02878 -40.66760 -40.08650 -38.44860 -35.94716 -35.00923 -34.94485 -33.63822 -33.16600 -33.09181 -29.72278 -28.33689 -27.77158 -27.17216 -25.64831 -24.33936 -22.39930 -21.89064 -21.75536 -21.05355 -20.55983 -19.87530 -18.28321 -17.96044 -17.72077 -17.15431 -16.74555 -16.54547 -16.33999 -16.30922 -16.09760 -15.59578 -15.28731 -15.09810 -14.90356 -14.68944 -14.38827 -14.20279 -14.05742 -13.85887 -13.70857 -13.59054 -13.42011 -13.35638 -13.27529 -12.94149 -12.89115 -12.57476 -12.50157 -12.38253 -12.11404 -12.04100 -11.57563 -11.47050 -11.01234 -10.92986 -10.45928 -10.30103 -9.97354 -9.95278 -9.33480 -9.27548 -8.44238 -5.91902 1.03589 1.39158 1.43565 1.55342 1.67692 1.93911 2.11103 2.16349 2.30442 2.46058 2.90866 3.23891 3.56604 3.59367 3.82780 3.89745 3.92556 3.99582 4.07193 4.14218 4.23105 4.36486 4.36675 4.39271 4.48141 4.52858 4.58992 4.60492 4.64218 4.72836 4.76348 4.84527 4.86092 4.95090 5.15597 5.22567 5.37962 5.38972 5.44131 5.56149 5.77352 5.91415 6.12363 6.33730 6.36232 6.64165 6.66005 7.12979 7.16950 7.32346 7.61823 8.17578 8.73000 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.002336 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.816033 B =11981.026742 C =13853.685033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.083 3.917 4 H 0.101 0.899 5 C 0.137 3.863 6 N -0.704 5.704 7 C 0.511 3.489 8 O -0.584 6.584 9 C -0.061 4.061 10 C -0.007 4.007 11 C -0.047 4.047 12 N -0.538 5.538 13 C 0.180 3.820 14 N -0.456 5.456 15 C 0.063 3.937 16 N -0.672 5.672 17 C 0.067 3.933 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.575 5.575 21 C -0.329 4.329 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.988 3.012 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.160 0.840 40 H 0.240 0.760 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.345 0.655 45 H 0.066 0.934 46 H 0.111 0.889 47 H 0.396 0.604 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.351 8.388 7.043 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C -0.027 4.027 4 H 0.119 0.881 5 C 0.013 3.987 6 N -0.356 5.356 7 C 0.298 3.702 8 O -0.464 6.464 9 C -0.101 4.101 10 C -0.123 4.123 11 C -0.194 4.194 12 N -0.257 5.257 13 C -0.103 4.103 14 N -0.138 5.138 15 C -0.078 4.078 16 N -0.303 5.303 17 C -0.066 4.066 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.213 5.213 21 C -0.459 4.459 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.812 3.188 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.198 1.198 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.252 0.748 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.178 0.822 40 H 0.256 0.744 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.117 0.883 44 H 0.163 0.837 45 H 0.084 0.916 46 H 0.129 0.871 47 H 0.230 0.770 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.175 9.004 8.882 22.971 hybrid contribution 0.774 -1.219 -1.728 2.252 sum -18.402 7.784 7.154 21.222 Atomic orbital electron populations 1.21756 0.94069 1.02345 1.02430 1.22175 0.97887 0.96218 1.02567 1.21908 0.86975 0.96114 0.97685 0.88075 1.21336 0.97643 0.82660 0.97092 1.45793 1.52844 1.15745 1.21173 1.20822 0.80186 0.87597 0.81590 1.90703 1.41584 1.76059 1.38083 1.20082 1.04027 0.91695 0.94328 1.20631 0.93543 1.00158 0.97944 1.22153 1.03550 1.03935 0.89796 1.70183 1.08912 1.12873 1.33745 1.25584 1.00099 1.03411 0.81167 1.45450 1.22831 1.34434 1.11066 1.22372 0.91430 1.02853 0.91130 1.60085 1.07968 1.52918 1.09291 1.21571 0.90939 1.02929 0.91130 1.20949 0.91214 0.82086 0.83051 1.90513 1.67142 1.55929 1.37127 1.41940 1.07305 1.64599 1.07470 1.19617 0.83752 1.48755 0.93785 0.90459 1.25958 1.04421 0.96602 0.94237 1.69655 1.37732 1.50270 0.98491 0.84996 0.77449 0.78539 0.77800 1.19906 1.19665 1.19823 0.92216 0.92362 0.91721 0.91362 0.91884 0.93526 0.90473 0.74832 0.85154 0.85326 0.82249 0.74370 0.90441 0.86406 0.88341 0.83662 0.91646 0.87055 0.76996 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.75 71.98 0.70 -1.28 16 2 C -0.15 -2.44 5.38 30.60 0.16 -2.27 16 3 C 0.08 1.52 2.21 44.92 0.10 1.61 16 4 H 0.10 1.56 7.70 -2.38 -0.02 1.54 16 5 C 0.14 2.81 5.02 86.38 0.43 3.25 16 6 N -0.70 -14.68 5.39 -463.07 -2.50 -17.17 16 7 C 0.51 12.21 7.82 87.65 0.69 12.89 16 8 O -0.58 -19.02 16.03 -3.03 -0.05 -19.07 16 9 C -0.06 -1.09 6.04 29.10 0.18 -0.92 16 10 C -0.01 -0.16 5.45 40.95 0.22 0.07 16 11 C -0.05 -1.32 11.79 83.52 0.98 -0.34 16 12 N -0.54 -15.40 11.25 -200.31 -2.25 -17.65 16 13 C 0.18 3.64 12.56 180.26 2.26 5.90 16 14 N -0.46 -8.32 3.15 -537.88 -1.70 -10.02 16 15 C 0.06 0.52 11.01 127.77 1.41 1.93 16 16 N -0.67 -17.22 5.22 -495.57 -2.59 -19.81 16 17 C 0.07 1.90 5.99 85.56 0.51 2.41 16 18 C 0.44 19.09 7.83 87.66 0.69 19.78 16 19 O -0.62 -32.24 15.90 -3.05 -0.05 -32.29 16 20 N -0.58 -27.71 5.29 -306.98 -1.62 -29.33 16 21 C -0.33 -18.00 9.68 84.04 0.81 -17.19 16 22 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -48.08 13.05 21.66 0.28 -47.80 16 25 Si 0.99 41.93 29.55 68.60 2.03 43.95 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.79 6.55 -2.38 -0.02 0.78 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.15 7.50 -2.39 -0.02 1.14 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.48 6.76 -2.39 -0.02 1.46 16 36 H 0.41 7.94 8.14 -92.70 -0.75 7.19 16 37 H 0.13 1.44 7.08 -2.39 -0.02 1.42 16 38 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.24 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.12 0.28 8.14 -2.38 -0.02 0.27 16 43 H 0.10 0.54 7.11 -2.39 -0.02 0.52 16 44 H 0.34 9.94 8.37 -89.69 -0.75 9.19 16 45 H 0.07 1.65 7.54 -2.39 -0.02 1.64 16 46 H 0.11 2.66 7.92 -2.39 -0.02 2.64 16 47 H 0.40 18.03 7.90 -92.71 -0.73 17.30 16 48 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -79.58 403.33 -0.05 -79.63 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: -1.23 Total: 43.90 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 9.62 Total: 25.66 kcal Atomic # 7 Polarization: -131.41 SS G_CDS: -10.37 Total: -141.79 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.10 Total: -51.36 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -79.58 -0.05 -79.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267826338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.504 kcal (2) G-P(sol) polarization free energy of solvation -79.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds