Wall clock time and date at job start Tue Mar 31 2020 20:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21620 * 120.00002 * 359.97438 * 7 6 5 9 9 C 1.47328 * 120.00265 * 179.97438 * 7 6 5 10 10 C 1.36420 * 126.23494 * 179.97438 * 9 7 6 11 11 N 1.35376 * 106.86702 * 179.97438 * 10 9 7 12 12 C 1.46507 * 126.13119 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47157 * 89.99740 * 12 11 10 14 14 C 1.35841 * 107.73284 * 359.97438 * 11 10 9 15 15 N 1.30174 * 109.00243 * 359.76006 * 14 11 10 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47045 * 89.99551 * 25 23 21 27 27 H 1.48502 * 109.47232 * 209.99530 * 25 23 21 28 28 H 1.48507 * 109.46899 * 329.99656 * 25 23 21 29 29 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 30 30 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 31 31 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.07995 * 126.56498 * 359.93766 * 10 9 7 38 38 H 1.08995 * 109.47000 * 209.99584 * 12 11 10 39 39 H 1.08995 * 109.47094 * 329.99897 * 12 11 10 40 40 H 1.09004 * 109.46863 * 59.99955 * 13 12 11 41 41 H 1.08999 * 109.47002 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.46571 * 299.99957 * 13 12 11 43 43 H 1.08002 * 125.50222 * 180.02562 * 14 11 10 44 44 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 45 45 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 46 46 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 47 47 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 48 48 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1686 2.1446 -0.2115 9 6 5.8862 4.4433 0.0671 10 6 7.1920 4.8354 0.0195 11 7 7.2039 6.1808 0.1693 12 6 8.3919 7.0381 0.1826 13 6 8.7059 7.4966 -1.2430 14 6 5.9168 6.5934 0.3051 15 7 5.1306 5.5580 0.2387 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2586 1.7275 4.8691 21 6 1.8024 2.3168 6.0198 22 1 1.0704 3.1091 5.9672 23 6 2.2819 1.8948 7.2538 24 7 3.1723 0.9304 7.3178 25 14 1.6598 2.6973 8.8218 26 1 0.4660 1.9636 9.3133 27 1 2.7257 2.6571 9.8550 28 1 1.2933 4.1092 8.5434 29 1 -0.3633 -1.0234 -0.0944 30 1 -0.3633 0.4300 0.9333 31 1 -0.3633 0.5933 -0.8391 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 8.0516 4.1951 -0.1118 38 1 8.2047 7.9086 0.8112 39 1 9.2391 6.4788 0.5792 40 1 7.8586 8.0559 -1.6397 41 1 9.5895 8.1348 -1.2330 42 1 8.8930 6.6260 -1.8716 43 1 5.5969 7.6159 0.4414 44 1 1.8236 3.0952 1.2081 45 1 3.3737 1.6315 2.3296 46 1 2.0702 0.4237 2.4306 47 1 2.9164 1.0162 4.9164 48 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267827839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:33 Heat of formation + Delta-G solvation = -41.933818 kcal Electronic energy + Delta-G solvation = -29160.023220 eV Core-core repulsion = 25056.732372 eV Total energy + Delta-G solvation = -4103.290848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.18420 -40.83831 -40.05053 -38.55319 -35.98065 -35.95605 -34.94604 -33.35244 -32.99449 -31.32048 -30.93254 -29.54449 -28.04289 -26.13585 -25.32158 -24.38934 -23.33881 -21.84698 -21.76176 -21.09117 -20.51975 -19.85743 -18.98152 -18.31843 -17.36057 -17.09251 -17.01214 -16.70615 -16.42947 -16.05074 -15.89698 -15.51245 -15.43967 -15.15614 -14.94703 -14.84412 -14.65404 -14.57658 -14.34971 -13.98048 -13.76205 -13.52630 -13.46919 -13.10458 -12.98793 -12.88020 -12.64957 -12.41877 -12.28072 -12.23221 -12.12483 -11.79248 -11.54349 -11.48962 -11.40755 -11.09891 -10.78549 -10.35268 -10.21815 -10.01748 -9.63045 -9.37288 -8.46455 -5.95551 0.52912 1.37494 1.40241 1.41444 1.53840 1.67211 2.04810 2.21919 2.29560 2.50221 2.93285 3.20166 3.40010 3.51136 3.71147 3.74978 3.87166 4.02481 4.08948 4.14308 4.20076 4.30401 4.38396 4.40275 4.41253 4.46222 4.56683 4.66073 4.68436 4.72815 4.83464 4.94627 5.00415 5.09762 5.20338 5.21977 5.34541 5.39492 5.40315 5.41603 5.59428 5.87290 6.07751 6.08089 6.33868 6.39723 6.59340 6.82141 7.12131 7.16184 7.55360 8.10661 8.71269 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007837 B = 0.003194 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3572.015084 B = 8763.298004 C =11391.063470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.086 3.914 4 H 0.108 0.892 5 C 0.085 3.915 6 N -0.711 5.711 7 C 0.598 3.402 8 O -0.581 6.581 9 C -0.104 4.104 10 C 0.042 3.958 11 N -0.448 5.448 12 C 0.091 3.909 13 C -0.166 4.166 14 C 0.193 3.807 15 N -0.499 5.499 16 N -0.659 5.659 17 C 0.065 3.935 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.016 4.016 24 N -0.923 5.923 25 Si 0.995 3.005 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.408 0.592 37 H 0.199 0.801 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.051 0.949 43 H 0.247 0.753 44 H 0.342 0.658 45 H 0.051 0.949 46 H 0.104 0.896 47 H 0.394 0.606 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.771 9.417 -19.131 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.025 4.025 4 H 0.126 0.874 5 C -0.041 4.041 6 N -0.362 5.362 7 C 0.386 3.614 8 O -0.461 6.461 9 C -0.232 4.232 10 C -0.100 4.100 11 N -0.129 5.129 12 C -0.029 4.029 13 C -0.223 4.223 14 C -0.091 4.091 15 N -0.218 5.218 16 N -0.290 5.290 17 C -0.068 4.068 18 C 0.228 3.772 19 O -0.504 6.504 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.098 0.902 23 C -0.215 4.215 24 N -0.564 5.564 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.196 1.196 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.244 0.756 37 H 0.216 0.784 38 H 0.141 0.859 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.263 0.737 44 H 0.161 0.839 45 H 0.068 0.932 46 H 0.122 0.878 47 H 0.227 0.773 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.507 8.985 -18.995 23.493 hybrid contribution 1.531 0.452 0.945 1.855 sum 12.038 9.437 -18.049 23.659 Atomic orbital electron populations 1.21573 0.94892 1.01289 1.01767 1.21539 0.96975 0.93620 1.02860 1.22066 0.90186 0.97823 0.92386 0.87397 1.22211 0.96582 0.82574 1.02688 1.45751 1.07070 1.10328 1.73016 1.17238 0.82304 0.86579 0.75260 1.90742 1.56829 1.45912 1.52652 1.20515 0.92096 0.93010 1.17571 1.22776 0.99074 0.85314 1.02796 1.45811 1.09666 1.06257 1.51144 1.22363 0.84921 0.95163 1.00436 1.22152 1.03650 1.02140 0.94388 1.25902 0.78800 1.00967 1.03426 1.70549 1.34120 0.98153 1.19021 1.60225 1.60596 1.07524 1.00693 1.21520 0.96372 1.00148 0.88711 1.20809 0.84872 0.85938 0.85594 1.90481 1.37267 1.35072 1.87534 1.41943 1.39455 1.34902 1.04950 1.19673 1.23581 1.18299 0.84589 0.90231 1.26088 0.96357 0.97005 1.02040 1.69694 1.30326 1.28753 1.27630 0.84908 0.78088 0.78430 0.76785 1.19523 1.19523 1.19618 0.92257 0.94221 0.92127 0.89064 0.92398 0.92342 0.89894 0.75564 0.78412 0.85899 0.87442 0.91968 0.88210 0.93000 0.73701 0.83877 0.93160 0.87772 0.77313 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.73 71.98 0.70 -2.46 16 2 C -0.11 -2.43 5.31 30.59 0.16 -2.26 16 3 C 0.09 2.05 2.71 44.91 0.12 2.17 16 4 H 0.11 2.24 8.14 -2.38 -0.02 2.23 16 5 C 0.08 2.19 4.47 86.38 0.39 2.57 16 6 N -0.71 -20.44 5.31 -466.47 -2.47 -22.92 16 7 C 0.60 19.36 7.81 86.64 0.68 20.04 16 8 O -0.58 -21.40 16.88 -4.09 -0.07 -21.47 16 9 C -0.10 -2.97 6.98 40.51 0.28 -2.69 16 10 C 0.04 0.91 11.26 83.72 0.94 1.85 16 11 N -0.45 -6.79 2.73 -528.38 -1.44 -8.23 16 12 C 0.09 0.52 6.84 86.38 0.59 1.11 16 13 C -0.17 -0.75 10.24 71.98 0.74 -0.02 16 14 C 0.19 3.50 12.55 180.10 2.26 5.76 16 15 N -0.50 -13.48 11.01 -188.82 -2.08 -15.56 16 16 N -0.66 -21.30 5.41 -495.58 -2.68 -23.98 16 17 C 0.06 2.43 5.30 85.55 0.45 2.88 16 18 C 0.44 22.16 7.83 87.66 0.69 22.84 16 19 O -0.62 -35.39 15.85 -3.05 -0.05 -35.44 16 20 N -0.58 -31.21 5.29 -307.00 -1.62 -32.83 16 21 C -0.33 -19.57 9.68 84.04 0.81 -18.76 16 22 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 23 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 24 N -0.92 -51.76 13.05 21.66 0.28 -51.48 16 25 Si 0.99 44.17 29.55 68.60 2.03 46.19 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.16 7.88 -2.39 -0.02 1.14 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.06 1.38 6.28 -2.39 -0.01 1.37 16 34 H 0.06 1.70 6.71 -2.39 -0.02 1.69 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.41 11.59 6.95 -92.70 -0.64 10.94 16 37 H 0.20 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 41 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.25 2.24 8.06 -2.91 -0.02 2.21 16 44 H 0.34 11.69 7.29 -89.70 -0.65 11.04 16 45 H 0.05 1.87 6.49 -2.39 -0.02 1.85 16 46 H 0.10 3.59 6.22 -2.39 -0.01 3.58 16 47 H 0.39 20.62 7.90 -92.71 -0.73 19.89 16 48 H 0.28 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -80.74 401.32 0.16 -80.58 By element: Atomic # 1 Polarization: 53.51 SS G_CDS: -1.02 Total: 52.48 kcal Atomic # 6 Polarization: 23.37 SS G_CDS: 9.28 Total: 32.65 kcal Atomic # 7 Polarization: -144.99 SS G_CDS: -10.01 Total: -155.00 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -0.12 Total: -56.91 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -80.74 0.16 -80.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267827839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.648 kcal (2) G-P(sol) polarization free energy of solvation -80.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds