Wall clock time and date at job start Tue Mar 31 2020 20:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 C 1.53000 * 109.47074 * 119.99638 * 2 1 3 5 5 H 1.08998 * 109.47446 * 181.02569 * 4 2 1 6 6 C 1.52995 * 109.47323 * 301.03170 * 4 2 1 7 7 N 1.46498 * 109.47599 * 174.99872 * 6 4 2 8 8 C 1.34774 * 120.00144 * 179.97438 * 7 6 4 9 9 O 1.21618 * 120.00236 * 0.02562 * 8 7 6 10 10 C 1.47330 * 120.00190 * 179.97438 * 8 7 6 11 11 C 1.36416 * 126.23823 * 179.97438 * 10 8 7 12 12 N 1.35382 * 106.87090 * 179.97438 * 11 10 8 13 13 C 1.46502 * 126.13372 * 179.97438 * 12 11 10 14 14 C 1.35850 * 107.72896 * 0.23817 * 12 11 10 15 15 N 1.30173 * 108.99969 * 359.59906 * 14 12 11 16 16 N 1.46909 * 109.46918 * 61.02908 * 4 2 1 17 17 C 1.46896 * 110.99856 * 86.41230 * 16 4 2 18 18 C 1.50698 * 109.47060 * 185.24323 * 17 16 4 19 19 O 1.21293 * 120.00041 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00074 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99906 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00415 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99887 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00101 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00145 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47276 * 89.99312 * 25 23 21 27 27 H 1.48499 * 109.47153 * 209.99950 * 25 23 21 28 28 H 1.48504 * 109.46627 * 329.99768 * 25 23 21 29 29 H 1.08996 * 109.47174 * 300.00407 * 1 2 3 30 30 H 1.08997 * 109.46886 * 60.00526 * 1 2 3 31 31 H 1.08996 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47174 * 239.99593 * 2 1 3 33 33 H 1.09001 * 109.47405 * 174.51196 * 3 2 1 34 34 H 1.09003 * 109.46950 * 294.50502 * 3 2 1 35 35 H 1.08999 * 109.47126 * 54.50972 * 3 2 1 36 36 H 1.09005 * 109.47379 * 54.99919 * 6 4 2 37 37 H 1.09007 * 109.47057 * 295.00095 * 6 4 2 38 38 H 0.97000 * 119.99897 * 359.97438 * 7 6 4 39 39 H 1.07993 * 126.56607 * 359.97438 * 11 10 8 40 40 H 1.09000 * 109.46778 * 89.99884 * 13 12 11 41 41 H 1.09002 * 109.46895 * 209.99796 * 13 12 11 42 42 H 1.08992 * 109.46852 * 329.99924 * 13 12 11 43 43 H 1.08000 * 125.49751 * 179.75094 * 14 12 11 44 44 H 1.00904 * 110.99711 * 210.36477 * 16 4 2 45 45 H 1.08993 * 109.47277 * 305.24433 * 17 16 4 46 46 H 1.09004 * 109.47158 * 65.24408 * 17 16 4 47 47 H 0.96993 * 120.00283 * 359.97438 * 20 18 17 48 48 H 0.97006 * 120.00370 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1299 -0.7053 1.2586 6 6 1.5090 -0.0151 2.4983 7 7 1.8975 -0.7730 3.6903 8 6 1.5375 -0.3364 4.9135 9 8 0.8896 0.6865 5.0278 10 6 1.9277 -1.0990 6.1122 11 6 1.6340 -0.7758 7.4046 12 7 2.1788 -1.7393 8.1841 13 6 2.1163 -1.8055 9.6463 14 6 2.7988 -2.6306 7.3675 15 7 2.6446 -2.2517 6.1318 16 7 1.5707 -2.1132 1.2370 17 6 2.4915 -2.9725 0.4808 18 6 1.9147 -4.3611 0.3805 19 8 0.8418 -4.6103 0.8885 20 7 2.5909 -5.3260 -0.2737 21 6 2.0658 -6.5892 -0.3654 22 1 1.1105 -6.8111 0.0869 23 6 2.7628 -7.5840 -1.0403 24 7 2.2598 -8.7948 -1.1278 25 14 4.4154 -7.2004 -1.8220 26 1 5.4990 -7.4540 -0.8387 27 1 4.6135 -8.0672 -3.0114 28 1 4.4476 -5.7750 -2.2373 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1256 1.4441 0.0983 34 1 1.7593 1.9271 -0.9351 35 1 1.5987 1.9839 0.8367 36 1 0.4220 0.0475 2.4459 37 1 1.9285 0.9895 2.5538 38 1 2.4139 -1.5891 3.5991 39 1 1.0742 0.0841 7.7414 40 1 1.2300 -2.3642 9.9471 41 1 3.0073 -2.3058 10.0257 42 1 2.0651 -0.7960 10.0537 43 1 3.3314 -3.5126 7.6913 44 1 1.4416 -2.4596 2.1758 45 1 2.6308 -2.5637 -0.5199 46 1 3.4527 -3.0145 0.9932 47 1 3.4487 -5.1267 -0.6802 48 1 2.7461 -9.4892 -1.5992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268208938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:28 Heat of formation + Delta-G solvation = -5.029806 kcal Electronic energy + Delta-G solvation = -29123.395066 eV Core-core repulsion = 25021.704496 eV Total energy + Delta-G solvation = -4101.690570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.42181 -39.69134 -38.53736 -37.59350 -34.56490 -34.08840 -34.03531 -33.16456 -31.59260 -30.17187 -28.86805 -27.53668 -27.07369 -26.10160 -24.16897 -23.34834 -22.65226 -21.45292 -20.29133 -19.34431 -19.14076 -18.38071 -18.01112 -16.59957 -16.40459 -16.24970 -15.82851 -15.40026 -15.31645 -14.84214 -14.75029 -14.41911 -14.21240 -14.07559 -13.78962 -13.77381 -13.36723 -13.34376 -13.21324 -13.02061 -12.86425 -12.48664 -12.33808 -12.06597 -11.81021 -11.72144 -11.54005 -11.14755 -10.91497 -10.77476 -10.56321 -10.55317 -10.37326 -10.09248 -10.08494 -9.92937 -9.51719 -9.13667 -8.81239 -8.52526 -8.13778 -8.07178 -6.26325 -3.77306 1.37183 2.19986 2.28581 3.06259 3.10013 3.18012 3.19311 3.47572 3.81216 4.07057 4.14673 4.19007 4.21762 4.47630 4.59007 4.62424 4.80687 4.86069 4.90495 5.02120 5.10241 5.20085 5.25607 5.31054 5.34855 5.55234 5.62697 5.69235 5.70764 5.76087 5.82460 5.90735 5.95990 6.00578 6.09654 6.14936 6.18234 6.35885 6.47016 6.66365 6.67823 7.12854 7.35194 7.58378 7.63647 7.64714 8.20153 8.20704 8.65603 9.00702 9.48068 9.89622 10.87021 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.003021 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.209373 B = 9264.958676 C =11773.418522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.151 4.151 4 C 0.080 3.920 5 H 0.050 0.950 6 C 0.114 3.886 7 N -0.717 5.717 8 C 0.607 3.393 9 O -0.548 6.548 10 C -0.064 4.064 11 C 0.032 3.968 12 N -0.462 5.462 13 C 0.070 3.930 14 C 0.188 3.812 15 N -0.460 5.460 16 N -0.660 5.660 17 C 0.047 3.953 18 C 0.453 3.547 19 O -0.560 6.560 20 N -0.593 5.593 21 C -0.302 4.302 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.884 5.884 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.407 0.593 39 H 0.188 0.812 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.213 0.787 44 H 0.350 0.650 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 19.340 16.801 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.209 4.209 4 C -0.030 4.030 5 H 0.067 0.933 6 C -0.009 4.009 7 N -0.369 5.369 8 C 0.394 3.606 9 O -0.426 6.426 10 C -0.193 4.193 11 C -0.107 4.107 12 N -0.144 5.144 13 C -0.072 4.072 14 C -0.096 4.096 15 N -0.179 5.179 16 N -0.295 5.295 17 C -0.086 4.086 18 C 0.238 3.762 19 O -0.442 6.442 20 N -0.233 5.233 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.524 5.524 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.203 1.203 28 H -0.195 1.195 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.243 0.757 39 H 0.205 0.795 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.230 0.770 44 H 0.172 0.828 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.202 0.798 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.837 19.343 16.041 25.420 hybrid contribution 2.139 -0.148 0.608 2.229 sum 5.976 19.196 16.649 26.103 Atomic orbital electron populations 1.21808 0.94300 1.03446 1.00530 1.21032 0.97180 0.94774 0.97050 1.21934 1.00735 0.96290 1.01962 1.21832 0.97321 0.89428 0.94436 0.93255 1.21760 1.01742 0.95019 0.82397 1.45832 1.56607 1.28866 1.05588 1.16831 0.78569 0.83411 0.81832 1.90781 1.40385 1.24801 1.86615 1.20558 1.08102 0.97449 0.93161 1.22575 1.01819 0.95731 0.90561 1.45380 1.40497 1.20036 1.08495 1.22154 1.04444 1.04747 0.75872 1.25257 1.01720 0.97785 0.84837 1.70641 1.16337 1.10779 1.20119 1.60020 1.48327 0.99852 1.21307 1.21779 0.93705 0.93407 0.99720 1.19695 0.86978 0.85540 0.83982 1.90576 1.22069 1.81883 1.49625 1.42205 1.20179 1.10529 1.50365 1.19429 1.06934 0.83385 1.33347 0.86322 1.25029 0.98305 0.95173 0.97714 1.69623 1.38673 1.01717 1.42380 0.86675 0.84303 0.78476 0.79949 1.19704 1.20261 1.19479 0.93021 0.93585 0.90531 0.90738 0.92919 0.92509 0.92420 0.89759 0.90638 0.75709 0.79516 0.89962 0.88950 0.89308 0.77044 0.82808 0.89399 0.93695 0.79768 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.68 37.16 0.32 -1.45 16 2 C -0.08 -0.92 2.84 -90.62 -0.26 -1.18 16 3 C -0.15 -1.41 8.71 37.16 0.32 -1.08 16 4 C 0.08 0.98 2.01 -67.71 -0.14 0.84 16 5 H 0.05 0.56 7.84 -51.93 -0.41 0.16 16 6 C 0.11 1.41 4.60 -4.05 -0.02 1.40 16 7 N -0.72 -9.55 4.97 -61.41 -0.31 -9.85 16 8 C 0.61 8.82 7.81 -12.56 -0.10 8.72 16 9 O -0.55 -9.04 16.88 5.26 0.09 -8.95 16 10 C -0.06 -0.83 6.98 -83.09 -0.58 -1.41 16 11 C 0.03 0.32 11.26 -16.64 -0.19 0.13 16 12 N -0.46 -3.41 3.13 -125.78 -0.39 -3.81 16 13 C 0.07 0.18 11.15 59.85 0.67 0.84 16 14 C 0.19 1.69 12.55 -89.91 -1.13 0.56 16 15 N -0.46 -5.89 11.01 -11.03 -0.12 -6.01 16 16 N -0.66 -10.33 5.11 -107.99 -0.55 -10.88 16 17 C 0.05 0.78 5.93 -4.98 -0.03 0.75 16 18 C 0.45 10.40 7.83 -10.99 -0.09 10.31 16 19 O -0.56 -15.30 15.89 5.55 0.09 -15.21 16 20 N -0.59 -14.29 5.09 -10.96 -0.06 -14.34 16 21 C -0.30 -8.66 10.16 -14.93 -0.15 -8.81 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -26.12 13.96 55.50 0.77 -25.34 16 25 Si 0.88 19.59 27.74 -169.99 -4.72 14.87 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 29 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.15 7.63 -51.93 -0.40 0.76 16 32 H 0.07 0.90 7.46 -51.93 -0.39 0.51 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.52 6.87 -51.93 -0.36 0.17 16 36 H 0.08 1.15 6.15 -51.93 -0.32 0.83 16 37 H 0.08 0.88 6.86 -51.93 -0.36 0.52 16 38 H 0.41 5.41 7.11 -40.82 -0.29 5.12 16 39 H 0.19 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 42 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.21 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.35 5.87 6.61 -39.29 -0.26 5.61 16 45 H 0.09 1.32 7.42 -51.93 -0.39 0.93 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -37.27 395.32 -7.77 -45.05 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: -7.08 Total: 17.87 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -1.46 Total: 10.66 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -0.65 Total: -70.24 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.18 Total: -24.16 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.72 Total: 14.87 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.27 -7.77 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268208938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.017 kcal (2) G-P(sol) polarization free energy of solvation -37.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds