Wall clock time and date at job start Tue Mar 31 2020 20:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 C 1.53000 * 109.47074 * 119.99638 * 2 1 3 5 5 H 1.08998 * 109.47446 * 181.02569 * 4 2 1 6 6 C 1.52995 * 109.47323 * 301.03170 * 4 2 1 7 7 N 1.46498 * 109.47599 * 174.99872 * 6 4 2 8 8 C 1.34774 * 120.00144 * 179.97438 * 7 6 4 9 9 O 1.21618 * 120.00236 * 0.02562 * 8 7 6 10 10 C 1.47330 * 120.00190 * 179.97438 * 8 7 6 11 11 C 1.36416 * 126.23823 * 179.97438 * 10 8 7 12 12 N 1.35382 * 106.87090 * 179.97438 * 11 10 8 13 13 C 1.46502 * 126.13372 * 179.97438 * 12 11 10 14 14 C 1.35850 * 107.72896 * 0.23817 * 12 11 10 15 15 N 1.30173 * 108.99969 * 359.59906 * 14 12 11 16 16 N 1.46909 * 109.46918 * 61.02908 * 4 2 1 17 17 C 1.46896 * 110.99856 * 86.41230 * 16 4 2 18 18 C 1.50698 * 109.47060 * 185.24323 * 17 16 4 19 19 O 1.21293 * 120.00041 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00074 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99906 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00415 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99887 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00101 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00145 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47276 * 89.99312 * 25 23 21 27 27 H 1.48499 * 109.47153 * 209.99950 * 25 23 21 28 28 H 1.48504 * 109.46627 * 329.99768 * 25 23 21 29 29 H 1.08996 * 109.47174 * 300.00407 * 1 2 3 30 30 H 1.08997 * 109.46886 * 60.00526 * 1 2 3 31 31 H 1.08996 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47174 * 239.99593 * 2 1 3 33 33 H 1.09001 * 109.47405 * 174.51196 * 3 2 1 34 34 H 1.09003 * 109.46950 * 294.50502 * 3 2 1 35 35 H 1.08999 * 109.47126 * 54.50972 * 3 2 1 36 36 H 1.09005 * 109.47379 * 54.99919 * 6 4 2 37 37 H 1.09007 * 109.47057 * 295.00095 * 6 4 2 38 38 H 0.97000 * 119.99897 * 359.97438 * 7 6 4 39 39 H 1.07993 * 126.56607 * 359.97438 * 11 10 8 40 40 H 1.09000 * 109.46778 * 89.99884 * 13 12 11 41 41 H 1.09002 * 109.46895 * 209.99796 * 13 12 11 42 42 H 1.08992 * 109.46852 * 329.99924 * 13 12 11 43 43 H 1.08000 * 125.49751 * 179.75094 * 14 12 11 44 44 H 1.00904 * 110.99711 * 210.36477 * 16 4 2 45 45 H 1.08993 * 109.47277 * 305.24433 * 17 16 4 46 46 H 1.09004 * 109.47158 * 65.24408 * 17 16 4 47 47 H 0.96993 * 120.00283 * 359.97438 * 20 18 17 48 48 H 0.97006 * 120.00370 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1299 -0.7053 1.2586 6 6 1.5090 -0.0151 2.4983 7 7 1.8975 -0.7730 3.6903 8 6 1.5375 -0.3364 4.9135 9 8 0.8896 0.6865 5.0278 10 6 1.9277 -1.0990 6.1122 11 6 1.6340 -0.7758 7.4046 12 7 2.1788 -1.7393 8.1841 13 6 2.1163 -1.8055 9.6463 14 6 2.7988 -2.6306 7.3675 15 7 2.6446 -2.2517 6.1318 16 7 1.5707 -2.1132 1.2370 17 6 2.4915 -2.9725 0.4808 18 6 1.9147 -4.3611 0.3805 19 8 0.8418 -4.6103 0.8885 20 7 2.5909 -5.3260 -0.2737 21 6 2.0658 -6.5892 -0.3654 22 1 1.1105 -6.8111 0.0869 23 6 2.7628 -7.5840 -1.0403 24 7 2.2598 -8.7948 -1.1278 25 14 4.4154 -7.2004 -1.8220 26 1 5.4990 -7.4540 -0.8387 27 1 4.6135 -8.0672 -3.0114 28 1 4.4476 -5.7750 -2.2373 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1256 1.4441 0.0983 34 1 1.7593 1.9271 -0.9351 35 1 1.5987 1.9839 0.8367 36 1 0.4220 0.0475 2.4459 37 1 1.9285 0.9895 2.5538 38 1 2.4139 -1.5891 3.5991 39 1 1.0742 0.0841 7.7414 40 1 1.2300 -2.3642 9.9471 41 1 3.0073 -2.3058 10.0257 42 1 2.0651 -0.7960 10.0537 43 1 3.3314 -3.5126 7.6913 44 1 1.4416 -2.4596 2.1758 45 1 2.6308 -2.5637 -0.5199 46 1 3.4527 -3.0145 0.9932 47 1 3.4487 -5.1267 -0.6802 48 1 2.7461 -9.4892 -1.5992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268208938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:27 Heat of formation + Delta-G solvation = -34.278711 kcal Electronic energy + Delta-G solvation = -29124.663393 eV Core-core repulsion = 25021.704496 eV Total energy + Delta-G solvation = -4102.958898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.13361 -40.81178 -40.16547 -38.86498 -36.02600 -35.38854 -34.87485 -34.48581 -33.69663 -30.98750 -29.90358 -28.34315 -27.93347 -27.43189 -25.60872 -24.58896 -23.55334 -22.10964 -21.35309 -21.19764 -20.28612 -20.05210 -18.91512 -17.86214 -17.38358 -17.20869 -16.94725 -16.69562 -16.64464 -16.33569 -15.65893 -15.57164 -15.38764 -15.03421 -14.93434 -14.79980 -14.72215 -14.39373 -14.23634 -14.10569 -13.91329 -13.60303 -13.44649 -13.34444 -13.06626 -12.91965 -12.68071 -12.58025 -12.39871 -11.97793 -11.86811 -11.72902 -11.49313 -11.43820 -11.31802 -11.07168 -10.74273 -10.40351 -10.22633 -10.17589 -9.61768 -9.31631 -8.39414 -6.00065 0.54483 1.31635 1.36998 1.41891 1.45880 1.73048 1.98966 2.24509 2.24951 2.51004 2.70318 3.17156 3.34821 3.41954 3.64782 3.86085 3.98949 4.03159 4.12664 4.17935 4.20191 4.39002 4.40847 4.44045 4.47112 4.48213 4.53694 4.66134 4.73988 4.75591 4.90564 4.98157 5.04856 5.14172 5.17993 5.29096 5.38742 5.41451 5.53542 5.55958 5.61752 5.91822 6.04697 6.07864 6.31503 6.38914 6.62117 6.82398 6.90682 7.16913 7.42315 8.00012 8.78507 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.003021 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3215.209373 B = 9264.958676 C =11773.418522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 C -0.145 4.145 4 C 0.088 3.912 5 H 0.071 0.929 6 C 0.119 3.881 7 N -0.714 5.714 8 C 0.601 3.399 9 O -0.578 6.578 10 C -0.105 4.105 11 C 0.042 3.958 12 N -0.453 5.453 13 C 0.062 3.938 14 C 0.191 3.809 15 N -0.503 5.503 16 N -0.678 5.678 17 C 0.061 3.939 18 C 0.451 3.549 19 O -0.612 6.612 20 N -0.591 5.591 21 C -0.327 4.327 22 H 0.053 0.947 23 C -0.016 4.016 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.407 0.593 39 H 0.204 0.796 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.247 0.753 44 H 0.341 0.659 45 H 0.116 0.884 46 H 0.079 0.921 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.541 21.415 17.161 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 C -0.203 4.203 4 C -0.022 4.022 5 H 0.089 0.911 6 C -0.004 4.004 7 N -0.365 5.365 8 C 0.389 3.611 9 O -0.459 6.459 10 C -0.233 4.233 11 C -0.100 4.100 12 N -0.133 5.133 13 C -0.078 4.078 14 C -0.094 4.094 15 N -0.222 5.222 16 N -0.312 5.312 17 C -0.071 4.071 18 C 0.238 3.762 19 O -0.497 6.497 20 N -0.233 5.233 21 C -0.456 4.456 22 H 0.071 0.929 23 C -0.214 4.214 24 N -0.577 5.577 25 Si 0.785 3.215 26 H -0.181 1.181 27 H -0.201 1.201 28 H -0.154 1.154 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.243 0.757 39 H 0.221 0.779 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.263 0.737 44 H 0.161 0.839 45 H 0.134 0.866 46 H 0.097 0.903 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.241 21.440 16.417 27.958 hybrid contribution 0.937 -0.847 0.654 1.423 sum 8.178 20.593 17.071 27.971 Atomic orbital electron populations 1.21753 0.95487 1.01373 1.01154 1.21048 0.96137 0.96250 0.96401 1.21878 1.01461 0.94441 1.02523 1.21887 0.98388 0.87239 0.94655 0.91126 1.21735 1.00786 0.95573 0.82323 1.45843 1.56263 1.28761 1.05661 1.17177 0.78080 0.83236 0.82626 1.90741 1.41908 1.26126 1.87124 1.20545 1.10577 0.98561 0.93665 1.22845 1.00861 0.96258 0.90003 1.45649 1.38857 1.18605 1.10210 1.22546 1.06136 1.06359 0.72753 1.25930 1.00869 0.98367 0.84199 1.70551 1.17775 1.11356 1.22528 1.60009 1.49066 1.01357 1.20743 1.21702 0.94441 0.89079 1.01913 1.20965 0.86015 0.87593 0.81590 1.90556 1.24607 1.83277 1.51213 1.42016 1.21046 1.09131 1.51155 1.18995 1.05582 0.86271 1.34757 0.92872 1.26121 1.03550 0.94210 0.97548 1.69809 1.41255 1.03313 1.43344 0.85357 0.77053 0.80407 0.78653 1.18067 1.20094 1.15408 0.92996 0.92421 0.93860 0.90727 0.91613 0.91589 0.92406 0.91511 0.89434 0.75719 0.77921 0.88961 0.86574 0.87748 0.73733 0.83890 0.86627 0.90290 0.77493 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.68 71.98 0.62 -2.79 16 2 C -0.08 -1.64 2.84 -10.79 -0.03 -1.67 16 3 C -0.15 -2.28 8.71 71.98 0.63 -1.66 16 4 C 0.09 1.99 2.01 44.91 0.09 2.08 16 5 H 0.07 1.36 7.84 -2.39 -0.02 1.34 16 6 C 0.12 2.90 4.60 86.38 0.40 3.30 16 7 N -0.71 -19.26 4.97 -466.46 -2.32 -21.58 16 8 C 0.60 17.96 7.81 86.64 0.68 18.63 16 9 O -0.58 -19.62 16.88 -4.09 -0.07 -19.69 16 10 C -0.11 -2.78 6.98 40.50 0.28 -2.49 16 11 C 0.04 0.80 11.26 83.72 0.94 1.74 16 12 N -0.45 -5.85 3.13 -551.85 -1.73 -7.58 16 13 C 0.06 0.13 11.15 127.77 1.42 1.56 16 14 C 0.19 3.17 12.55 180.10 2.26 5.43 16 15 N -0.50 -12.84 11.01 -188.81 -2.08 -14.92 16 16 N -0.68 -20.81 5.11 -495.58 -2.53 -23.34 16 17 C 0.06 1.90 5.93 85.56 0.51 2.41 16 18 C 0.45 20.84 7.83 87.66 0.69 21.52 16 19 O -0.61 -35.10 15.89 -3.07 -0.05 -35.15 16 20 N -0.59 -28.36 5.09 -306.99 -1.56 -29.93 16 21 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 22 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 23 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 24 N -0.94 -57.23 13.96 21.66 0.30 -56.93 16 25 Si 0.97 39.18 27.74 68.60 1.90 41.08 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 29 H 0.05 1.23 6.30 -2.39 -0.02 1.22 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.33 7.63 -2.39 -0.02 1.32 16 32 H 0.07 1.58 7.46 -2.39 -0.02 1.56 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.92 6.87 -2.39 -0.02 0.90 16 36 H 0.07 1.87 6.15 -2.38 -0.01 1.85 16 37 H 0.09 1.93 6.86 -2.38 -0.02 1.92 16 38 H 0.41 10.94 7.11 -92.71 -0.66 10.28 16 39 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.25 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.34 11.61 6.61 -89.69 -0.59 11.02 16 45 H 0.12 3.03 7.42 -2.39 -0.02 3.02 16 46 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 47 H 0.39 15.40 5.76 -92.71 -0.53 14.86 16 48 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -89.21 395.32 0.84 -88.36 By element: Atomic # 1 Polarization: 51.51 SS G_CDS: -0.83 Total: 50.68 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 9.81 Total: 28.99 kcal Atomic # 7 Polarization: -144.36 SS G_CDS: -9.92 Total: -154.27 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -0.12 Total: -54.84 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.90 Total: 41.08 kcal Total: -89.21 0.84 -88.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268208938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.083 kcal (2) G-P(sol) polarization free energy of solvation -89.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds