Wall clock time and date at job start Tue Mar 31 2020 20:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47159 * 180.02562 * 9 7 6 11 11 N 1.40321 * 126.32386 * 270.02509 * 10 9 7 12 12 C 1.28866 * 108.11694 * 180.51037 * 11 10 9 13 13 N 1.38008 * 108.82504 * 0.54435 * 12 11 10 14 14 C 1.34322 * 108.32121 * 358.31052 * 13 12 11 15 15 O 1.21816 * 126.33218 * 182.03031 * 14 13 12 16 16 C 1.46722 * 124.17929 * 177.60877 * 13 12 11 17 17 C 1.53284 * 108.65888 * 19.33002 * 16 13 12 18 18 C 1.53234 * 109.36593 * 308.21906 * 17 16 13 19 19 C 1.51120 * 127.46202 * 180.93975 * 12 11 10 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 38 38 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 39 39 H 1.09002 * 109.60572 * 259.57980 * 16 13 12 40 40 H 1.08995 * 109.60888 * 139.08558 * 16 13 12 41 41 H 1.09001 * 109.49375 * 188.25167 * 17 16 13 42 42 H 1.09005 * 109.49355 * 68.18651 * 17 16 13 43 43 H 1.09006 * 109.54554 * 310.87060 * 18 17 16 44 44 H 1.08997 * 109.62834 * 190.63338 * 18 17 16 45 45 H 1.09002 * 109.74776 * 317.32796 * 19 12 11 46 46 H 1.09005 * 109.75177 * 78.01045 * 19 12 11 47 47 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 48 48 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 7 7.3581 4.4767 -0.0849 11 7 8.2798 4.3453 0.9649 12 6 9.4665 4.4049 0.4661 13 7 9.3674 4.5863 -0.8984 14 6 8.0656 4.5993 -1.2292 15 8 7.6075 4.7045 -2.3530 16 6 10.5180 4.7498 -1.7940 17 6 11.7688 4.2144 -1.0880 18 6 11.8837 4.8563 0.2986 19 6 10.7805 4.2916 1.2038 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.5658 5.5007 2.2897 27 1 -2.6061 3.3542 1.8525 28 1 -2.0861 4.0083 4.1289 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 5.4672 5.0884 -0.7542 38 1 5.6136 4.8809 1.0075 39 1 10.6533 5.8060 -2.0266 40 1 10.3486 4.1892 -2.7132 41 1 12.6524 4.4606 -1.6770 42 1 11.6918 3.1322 -0.9825 43 1 11.7664 5.9365 0.2113 44 1 12.8595 4.6288 0.7277 45 1 10.7339 4.8655 2.1294 46 1 10.9874 3.2454 1.4292 47 1 2.2720 2.1231 1.9978 48 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269493399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:08 Heat of formation + Delta-G solvation = 11.111129 kcal Electronic energy + Delta-G solvation = -29507.155784 eV Core-core repulsion = 25406.165138 eV Total energy + Delta-G solvation = -4100.990647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.67265 -39.47273 -37.84156 -37.01930 -36.72583 -33.86013 -33.69304 -32.74909 -32.53778 -29.79199 -29.26782 -28.48298 -27.16814 -24.75440 -23.50484 -22.95530 -22.63945 -21.72416 -20.39823 -20.06172 -19.88435 -17.66945 -17.47905 -17.33311 -16.51775 -16.33353 -15.96821 -15.31789 -15.25913 -14.91220 -14.70632 -14.64140 -14.49364 -14.26584 -13.71002 -13.64738 -13.41843 -13.17054 -13.10590 -13.00064 -12.41142 -12.18155 -12.07759 -11.88717 -11.62128 -11.59805 -11.48416 -11.43506 -10.99779 -10.81302 -10.57491 -10.43912 -10.35234 -10.25788 -10.12592 -9.92058 -9.60229 -9.22643 -8.97200 -8.74330 -8.55431 -7.11411 -6.13517 -3.15263 1.57188 1.83834 2.62015 2.77163 2.82931 3.48885 3.50211 3.53185 3.66754 3.93263 4.12064 4.20024 4.31059 4.61764 4.64446 4.81483 4.89452 4.92293 5.02114 5.14074 5.20274 5.23818 5.27614 5.32708 5.35075 5.37305 5.49703 5.52751 5.63719 5.76375 5.83149 5.89762 5.90219 6.00341 6.08744 6.31646 6.40528 6.46924 6.51394 6.54748 6.79560 6.94715 7.20754 7.55662 7.77575 7.77722 7.99879 8.42823 8.70434 9.15164 10.01976 10.17135 11.33582 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.002378 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.798706 B =11774.086254 C =12476.662047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.056 0.944 5 C 0.116 3.884 6 N -0.709 5.709 7 C 0.495 3.505 8 O -0.540 6.540 9 C 0.142 3.858 10 N -0.435 5.435 11 N -0.264 5.264 12 C 0.273 3.727 13 N -0.556 5.556 14 C 0.657 3.343 15 O -0.555 6.555 16 C 0.132 3.868 17 C -0.137 4.137 18 C -0.124 4.124 19 C -0.039 4.039 20 N -0.732 5.732 21 C -0.328 4.328 22 H 0.068 0.932 23 C -0.043 4.043 24 N -0.942 5.942 25 Si 1.078 2.922 26 H -0.296 1.296 27 H -0.295 1.295 28 H -0.289 1.289 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.411 0.589 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.368 0.632 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.360 3.549 -7.557 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.074 0.926 5 C -0.009 4.009 6 N -0.362 5.362 7 C 0.279 3.721 8 O -0.417 6.417 9 C 0.017 3.983 10 N -0.254 5.254 11 N -0.085 5.085 12 C -0.006 4.006 13 N -0.286 5.286 14 C 0.357 3.643 15 O -0.429 6.429 16 C 0.010 3.990 17 C -0.175 4.175 18 C -0.162 4.162 19 C -0.079 4.079 20 N -0.376 5.376 21 C -0.458 4.458 22 H 0.086 0.914 23 C -0.241 4.241 24 N -0.587 5.587 25 Si 0.910 3.090 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.215 1.215 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.247 0.753 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.201 0.799 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 20.732 3.715 -6.818 22.139 hybrid contribution 1.033 -0.625 -1.451 1.887 sum 21.765 3.090 -8.269 23.487 Atomic orbital electron populations 1.21760 0.95522 0.99612 1.03381 1.22055 0.97151 0.98239 0.99961 1.20503 0.89683 0.92816 0.91128 0.92630 1.21693 0.95637 0.82370 1.01177 1.45885 1.06640 1.11034 1.72633 1.20803 0.82980 0.91154 0.77183 1.90691 1.56075 1.45993 1.48968 1.21250 0.74178 0.96093 1.06783 1.48281 1.05131 1.68109 1.03888 1.76780 0.95891 1.22789 1.13047 1.24253 0.96207 0.97948 0.82233 1.46020 1.07413 1.66906 1.08295 1.16444 0.81344 0.81273 0.85284 1.91071 1.73659 1.58813 1.19364 1.21768 0.82338 1.02426 0.92483 1.21987 0.96952 1.01775 0.96806 1.21717 0.98802 1.01028 0.94643 1.20490 0.85230 1.04303 0.97869 1.42469 1.16844 1.67037 1.11262 1.20027 0.92601 1.32249 1.00958 0.91407 1.25699 1.05692 1.00459 0.92281 1.70855 1.08481 1.47451 1.31946 0.83246 0.74423 0.75744 0.75615 1.22375 1.22173 1.21510 0.89593 0.94076 0.94872 0.93789 0.92707 0.91927 0.91778 0.75256 0.85805 0.85414 0.90070 0.89085 0.88923 0.90358 0.90706 0.89414 0.87608 0.87937 0.79877 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.18 37.15 0.34 -2.33 16 2 C -0.13 -2.37 5.61 -26.73 -0.15 -2.52 16 3 C 0.17 3.18 2.59 -67.93 -0.18 3.01 16 4 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 5 C 0.12 2.04 5.23 -4.04 -0.02 2.01 16 6 N -0.71 -12.01 5.39 -60.29 -0.32 -12.33 16 7 C 0.50 8.74 7.90 -10.99 -0.09 8.65 16 8 O -0.54 -11.50 16.43 5.55 0.09 -11.40 16 9 C 0.14 2.08 6.87 -5.19 -0.04 2.05 16 10 N -0.43 -6.97 3.12 -66.40 -0.21 -7.18 16 11 N -0.26 -3.86 12.51 33.12 0.41 -3.45 16 12 C 0.27 3.09 7.73 -153.76 -1.19 1.90 16 13 N -0.56 -6.83 3.13 -117.55 -0.37 -7.20 16 14 C 0.66 10.86 8.64 -87.04 -0.75 10.11 16 15 O -0.56 -10.72 17.83 5.09 0.09 -10.63 16 16 C 0.13 1.03 6.88 -3.77 -0.03 1.00 16 17 C -0.14 -0.60 5.94 -26.46 -0.16 -0.76 16 18 C -0.12 -0.45 5.96 -26.37 -0.16 -0.61 16 19 C -0.04 -0.23 6.32 -27.44 -0.17 -0.41 16 20 N -0.73 -16.58 4.50 -53.43 -0.24 -16.83 16 21 C -0.33 -8.35 7.75 -15.06 -0.12 -8.47 16 22 H 0.07 1.72 7.32 -52.48 -0.38 1.34 16 23 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 24 N -0.94 -27.69 13.70 55.49 0.76 -26.93 16 25 Si 1.08 24.93 29.92 -169.99 -5.09 19.84 16 26 H -0.30 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H 0.09 1.86 5.99 -51.93 -0.31 1.55 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.41 6.78 8.14 -40.82 -0.33 6.45 16 37 H 0.12 1.58 8.12 -51.93 -0.42 1.16 16 38 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 43 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 44 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.37 8.87 6.63 -40.82 -0.27 8.60 16 48 H 0.26 7.44 6.77 -40.82 -0.28 7.16 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -36.65 393.06 -9.29 -45.94 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.55 Total: 11.88 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -2.80 Total: 12.36 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: 0.03 Total: -73.92 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.18 Total: -22.03 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.09 Total: 19.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.65 -9.29 -45.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269493399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.050 kcal (2) G-P(sol) polarization free energy of solvation -36.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds