Wall clock time and date at job start Tue Mar 31 2020 20:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47159 * 180.02562 * 9 7 6 11 11 N 1.40321 * 126.32386 * 270.02509 * 10 9 7 12 12 C 1.28866 * 108.11694 * 180.51037 * 11 10 9 13 13 N 1.38008 * 108.82504 * 0.54435 * 12 11 10 14 14 C 1.34322 * 108.32121 * 358.31052 * 13 12 11 15 15 O 1.21816 * 126.33218 * 182.03031 * 14 13 12 16 16 C 1.46722 * 124.17929 * 177.60877 * 13 12 11 17 17 C 1.53284 * 108.65888 * 19.33002 * 16 13 12 18 18 C 1.53234 * 109.36593 * 308.21906 * 17 16 13 19 19 C 1.51120 * 127.46202 * 180.93975 * 12 11 10 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 38 38 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 39 39 H 1.09002 * 109.60572 * 259.57980 * 16 13 12 40 40 H 1.08995 * 109.60888 * 139.08558 * 16 13 12 41 41 H 1.09001 * 109.49375 * 188.25167 * 17 16 13 42 42 H 1.09005 * 109.49355 * 68.18651 * 17 16 13 43 43 H 1.09006 * 109.54554 * 310.87060 * 18 17 16 44 44 H 1.08997 * 109.62834 * 190.63338 * 18 17 16 45 45 H 1.09002 * 109.74776 * 317.32796 * 19 12 11 46 46 H 1.09005 * 109.75177 * 78.01045 * 19 12 11 47 47 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 48 48 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 7 7.3581 4.4767 -0.0849 11 7 8.2798 4.3453 0.9649 12 6 9.4665 4.4049 0.4661 13 7 9.3674 4.5863 -0.8984 14 6 8.0656 4.5993 -1.2292 15 8 7.6075 4.7045 -2.3530 16 6 10.5180 4.7498 -1.7940 17 6 11.7688 4.2144 -1.0880 18 6 11.8837 4.8563 0.2986 19 6 10.7805 4.2916 1.2038 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.5658 5.5007 2.2897 27 1 -2.6061 3.3542 1.8525 28 1 -2.0861 4.0083 4.1289 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 5.4672 5.0884 -0.7542 38 1 5.6136 4.8809 1.0075 39 1 10.6533 5.8060 -2.0266 40 1 10.3486 4.1892 -2.7132 41 1 12.6524 4.4606 -1.6770 42 1 11.6918 3.1322 -0.9825 43 1 11.7664 5.9365 0.2113 44 1 12.8595 4.6288 0.7277 45 1 10.7339 4.8655 2.1294 46 1 10.9874 3.2454 1.4292 47 1 2.2720 2.1231 1.9978 48 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269493399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:07 Heat of formation + Delta-G solvation = -14.405680 kcal Electronic energy + Delta-G solvation = -29508.262276 eV Core-core repulsion = 25406.165138 eV Total energy + Delta-G solvation = -4102.097139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.69586 -40.90012 -38.88497 -38.49862 -37.79444 -35.50572 -34.57834 -34.32070 -33.60102 -31.40922 -30.36487 -29.63409 -28.47883 -25.73557 -25.18377 -24.08845 -23.67268 -22.86126 -21.90028 -21.35088 -20.70734 -19.46839 -18.76826 -18.53417 -17.62353 -17.46933 -17.11734 -16.71462 -16.62869 -16.19525 -16.00424 -15.57402 -15.47389 -15.24815 -15.19208 -14.78196 -14.72790 -14.46472 -14.26607 -14.01336 -13.83675 -13.37015 -13.23555 -13.14039 -12.94365 -12.72690 -12.60478 -12.14288 -12.09851 -11.98669 -11.90363 -11.86876 -11.84704 -11.59025 -11.52955 -11.37786 -11.19008 -10.93535 -10.79724 -10.21820 -9.70943 -9.07689 -8.26224 -5.22096 0.53894 0.90544 1.38559 1.42980 1.62634 1.71235 1.84538 1.89510 2.19599 2.75138 3.17210 3.48214 3.52951 3.59497 3.70776 3.73567 3.81775 3.83167 3.88160 4.03178 4.23033 4.32031 4.36107 4.36850 4.40413 4.44687 4.52258 4.59729 4.74328 4.75599 4.85374 4.87617 4.97517 4.97907 5.01900 5.04418 5.11061 5.16004 5.31982 5.33866 5.44239 5.56927 5.63140 5.73321 6.36490 6.51066 6.59083 6.81966 7.01683 7.14871 8.04782 8.17598 9.24214 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.002378 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.798706 B =11774.086254 C =12476.662047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.172 3.828 4 H 0.058 0.942 5 C 0.124 3.876 6 N -0.704 5.704 7 C 0.495 3.505 8 O -0.579 6.579 9 C 0.142 3.858 10 N -0.445 5.445 11 N -0.305 5.305 12 C 0.286 3.714 13 N -0.553 5.553 14 C 0.638 3.362 15 O -0.597 6.597 16 C 0.117 3.883 17 C -0.130 4.130 18 C -0.117 4.117 19 C -0.041 4.041 20 N -0.738 5.738 21 C -0.305 4.305 22 H 0.071 0.929 23 C -0.103 4.103 24 N -0.979 5.979 25 Si 1.120 2.880 26 H -0.287 1.287 27 H -0.276 1.276 28 H -0.302 1.302 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.414 0.586 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.359 0.641 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.015 3.733 -8.257 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.063 3.937 4 H 0.076 0.924 5 C 0.000 4.000 6 N -0.356 5.356 7 C 0.280 3.720 8 O -0.459 6.459 9 C 0.017 3.983 10 N -0.263 5.263 11 N -0.127 5.127 12 C 0.008 3.992 13 N -0.281 5.281 14 C 0.337 3.663 15 O -0.474 6.474 16 C -0.003 4.003 17 C -0.167 4.167 18 C -0.154 4.154 19 C -0.080 4.080 20 N -0.380 5.380 21 C -0.436 4.436 22 H 0.089 0.911 23 C -0.295 4.295 24 N -0.628 5.628 25 Si 0.948 3.052 26 H -0.214 1.214 27 H -0.201 1.201 28 H -0.229 1.229 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.251 0.749 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.142 0.858 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.191 0.809 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.419 3.889 -7.553 23.975 hybrid contribution 0.611 -0.759 -1.317 1.638 sum 23.031 3.129 -8.870 24.877 Atomic orbital electron populations 1.21679 0.95684 1.00631 1.01852 1.21986 0.96889 0.97214 1.00953 1.20616 0.90434 0.93307 0.89328 0.92410 1.21568 0.94546 0.82681 1.01248 1.45852 1.06672 1.10898 1.72157 1.21313 0.82631 0.92026 0.75999 1.90660 1.56938 1.47457 1.50890 1.21358 0.74312 0.94215 1.08393 1.48440 1.05651 1.67933 1.04288 1.76791 0.96954 1.25856 1.13112 1.25398 0.97189 0.94651 0.81970 1.46321 1.06915 1.65504 1.09346 1.16812 0.82857 0.81622 0.84974 1.91010 1.74791 1.60860 1.20740 1.22229 0.82346 1.03592 0.92087 1.22032 0.95891 1.01287 0.97514 1.21761 0.99185 1.00980 0.93509 1.20909 0.82965 1.05681 0.98488 1.42569 1.15920 1.67285 1.12265 1.20240 0.93142 1.29898 1.00320 0.91084 1.26831 1.08077 1.01985 0.92561 1.70960 1.08686 1.49909 1.33261 0.82678 0.71748 0.75746 0.75068 1.21403 1.20133 1.22902 0.93199 0.93284 0.92727 0.90808 0.93652 0.93090 0.90739 0.74892 0.84224 0.83533 0.88566 0.90191 0.85825 0.90921 0.90306 0.86201 0.85879 0.86629 0.80892 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.18 71.98 0.66 -4.28 16 2 C -0.13 -4.41 5.61 30.59 0.17 -4.24 16 3 C 0.17 6.34 2.59 44.99 0.12 6.46 16 4 H 0.06 2.14 8.08 -2.38 -0.02 2.13 16 5 C 0.12 4.33 5.23 86.38 0.45 4.79 16 6 N -0.70 -23.99 5.39 -463.06 -2.49 -26.49 16 7 C 0.49 17.82 7.90 87.66 0.69 18.51 16 8 O -0.58 -25.28 16.43 -3.05 -0.05 -25.33 16 9 C 0.14 4.25 6.87 85.63 0.59 4.84 16 10 N -0.45 -14.59 3.12 -481.98 -1.50 -16.09 16 11 N -0.31 -8.98 12.51 -49.11 -0.61 -9.60 16 12 C 0.29 6.24 7.73 137.76 1.06 7.30 16 13 N -0.55 -13.43 3.13 -644.25 -2.02 -15.45 16 14 C 0.64 21.68 8.64 179.10 1.55 23.23 16 15 O -0.60 -23.94 17.83 -4.72 -0.08 -24.03 16 16 C 0.12 1.70 6.88 86.43 0.59 2.30 16 17 C -0.13 -0.75 5.94 30.77 0.18 -0.57 16 18 C -0.12 -0.41 5.96 30.83 0.18 -0.22 16 19 C -0.04 -0.38 6.32 30.14 0.19 -0.19 16 20 N -0.74 -33.50 4.50 -322.94 -1.45 -34.95 16 21 C -0.30 -15.46 7.75 84.03 0.65 -14.80 16 22 H 0.07 3.54 7.32 -2.91 -0.02 3.51 16 23 C -0.10 -5.63 5.50 84.86 0.47 -5.17 16 24 N -0.98 -58.71 13.70 21.65 0.30 -58.41 16 25 Si 1.12 50.31 29.92 68.60 2.05 52.37 16 26 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 27 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 29 H 0.05 2.11 5.99 -2.38 -0.01 2.09 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.41 13.71 8.14 -92.71 -0.75 12.96 16 37 H 0.14 3.64 8.12 -2.39 -0.02 3.62 16 38 H 0.15 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.07 0.55 8.10 -2.38 -0.02 0.53 16 43 H 0.08 0.28 8.11 -2.38 -0.02 0.26 16 44 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.36 17.68 6.63 -92.71 -0.61 17.06 16 48 H 0.24 14.63 6.77 -92.71 -0.63 14.00 16 Total: -1.00 -82.30 393.06 1.45 -80.85 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: -0.24 Total: 39.18 kcal Atomic # 6 Polarization: 30.40 SS G_CDS: 7.56 Total: 37.96 kcal Atomic # 7 Polarization: -153.20 SS G_CDS: -7.79 Total: -160.99 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -0.13 Total: -49.36 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.37 kcal Total: -82.30 1.45 -80.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269493399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.441 kcal (2) G-P(sol) polarization free energy of solvation -82.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds