Wall clock time and date at job start Tue Mar 31 2020 20:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 6 6 N 1.46495 * 109.47068 * 174.99916 * 5 3 2 7 7 C 1.34784 * 119.99706 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99905 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99939 * 180.02562 * 7 6 5 10 10 N 1.46503 * 109.47016 * 179.97438 * 9 7 6 11 11 N 1.40314 * 126.32250 * 270.02170 * 10 9 7 12 12 C 1.28873 * 108.11647 * 180.51172 * 11 10 9 13 13 N 1.38010 * 108.81989 * 0.54908 * 12 11 10 14 14 C 1.34320 * 108.32289 * 358.30535 * 13 12 11 15 15 O 1.21818 * 126.33207 * 182.03486 * 14 13 12 16 16 C 1.46721 * 124.17590 * 177.61167 * 13 12 11 17 17 C 1.53293 * 108.66167 * 19.32593 * 16 13 12 18 18 C 1.53236 * 109.35991 * 308.22210 * 17 16 13 19 19 C 1.51116 * 127.46342 * 180.93973 * 12 11 10 20 20 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 21 21 C 1.36944 * 120.00088 * 84.99964 * 20 3 2 22 22 H 1.08000 * 119.99709 * 359.97438 * 21 20 3 23 23 C 1.38811 * 119.99796 * 180.02562 * 21 20 3 24 24 N 1.31615 * 119.99676 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46944 * 90.00169 * 25 23 21 27 27 H 1.48506 * 109.46858 * 210.00076 * 25 23 21 28 28 H 1.48493 * 109.47147 * 330.00100 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.08994 * 109.47064 * 295.00931 * 5 3 2 35 35 H 1.09009 * 109.46393 * 55.00173 * 5 3 2 36 36 H 0.96997 * 120.00558 * 0.02562 * 6 5 3 37 37 H 1.09001 * 109.46759 * 299.99983 * 9 7 6 38 38 H 1.08998 * 109.47009 * 60.00109 * 9 7 6 39 39 H 1.09001 * 109.60332 * 259.57915 * 16 13 12 40 40 H 1.09001 * 109.60859 * 139.07660 * 16 13 12 41 41 H 1.08997 * 109.49194 * 188.25922 * 17 16 13 42 42 H 1.08997 * 109.48644 * 68.18599 * 17 16 13 43 43 H 1.09005 * 109.54822 * 310.86500 * 18 17 16 44 44 H 1.09001 * 109.62529 * 190.63325 * 18 17 16 45 45 H 1.09005 * 109.75048 * 317.33110 * 19 12 11 46 46 H 1.08996 * 109.74777 * 78.01152 * 19 12 11 47 47 H 0.96998 * 120.00208 * 264.99507 * 20 3 2 48 48 H 0.97004 * 120.00362 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0630 0.0859 8 8 6.1636 2.1482 0.2565 9 6 5.8982 4.4749 -0.0368 10 7 7.3582 4.4766 0.0835 11 7 8.0942 4.6080 1.2709 12 6 9.3472 4.5739 0.9716 13 7 9.4748 4.4346 -0.3955 14 6 8.2446 4.3463 -0.9275 15 8 7.9775 4.1813 -2.1046 16 6 10.7587 4.4096 -1.1051 17 6 11.8676 4.0749 -0.1011 18 6 11.7675 5.0207 1.1004 19 6 10.5212 4.6585 1.9193 20 7 1.6524 2.0975 -1.2518 21 6 0.4155 2.6736 -1.3687 22 1 -0.2743 2.6446 -0.5382 23 6 0.0481 3.2937 -2.5550 24 7 -1.1408 3.8469 -2.6675 25 14 1.2411 3.3431 -3.9916 26 1 1.0382 2.1448 -4.8449 27 1 0.9990 4.5690 -4.7941 28 1 2.6343 3.3549 -3.4779 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8499 1.0377 1.0960 35 1 3.9954 0.8311 -0.6660 36 1 3.4409 3.5484 -0.1308 37 1 5.6126 4.8820 -1.0068 38 1 5.4680 5.0876 0.7554 39 1 10.9501 5.3864 -1.5493 40 1 10.7304 3.6493 -1.8857 41 1 12.8397 4.1960 -0.5791 42 1 11.7537 3.0448 0.2364 43 1 11.6867 6.0494 0.7490 44 1 12.6560 4.9168 1.7231 45 1 10.3356 5.4288 2.6679 46 1 10.6687 3.6963 2.4098 47 1 2.2718 2.1232 -1.9978 48 1 -1.3978 4.2800 -3.4966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269493400.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:11 Heat of formation + Delta-G solvation = -12.075123 kcal Electronic energy + Delta-G solvation = -29608.233887 eV Core-core repulsion = 25506.237809 eV Total energy + Delta-G solvation = -4101.996078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.68061 -40.86533 -38.88187 -38.47867 -37.78095 -35.36660 -34.53137 -34.17923 -33.58303 -32.09574 -30.51156 -29.68797 -28.56953 -25.71344 -25.01499 -23.95366 -23.65781 -22.84281 -21.84338 -21.39256 -20.69674 -19.71755 -18.61200 -18.50740 -17.60579 -17.39173 -17.18506 -16.92126 -16.45924 -16.24217 -15.90509 -15.61149 -15.29846 -15.18829 -15.02659 -14.73534 -14.61578 -14.42309 -14.37566 -14.21210 -14.00941 -13.42860 -13.16690 -13.12984 -12.92908 -12.91150 -12.87756 -12.34159 -12.14467 -12.09774 -11.92848 -11.89367 -11.85824 -11.62479 -11.52533 -11.42379 -11.37898 -10.99799 -10.79316 -10.17287 -9.69288 -9.31083 -7.97021 -5.28578 0.55019 0.91906 1.37325 1.40865 1.41809 1.44585 1.45300 1.92003 2.22757 2.49492 3.19001 3.35091 3.52475 3.55284 3.66590 3.73621 3.83375 3.85660 3.90738 4.06594 4.28310 4.31954 4.36606 4.41835 4.43239 4.52396 4.54026 4.67110 4.76985 4.79491 4.86413 4.88826 4.98280 5.04694 5.05418 5.08770 5.17020 5.17921 5.34646 5.37308 5.50168 5.58762 5.71822 5.86417 6.25972 6.40949 6.52225 6.83278 7.06068 7.11531 7.86370 8.04362 9.23959 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.002615 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.926769 B =10705.402989 C =11609.145008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.170 3.830 4 H 0.066 0.934 5 C 0.122 3.878 6 N -0.707 5.707 7 C 0.495 3.505 8 O -0.578 6.578 9 C 0.139 3.861 10 N -0.445 5.445 11 N -0.298 5.298 12 C 0.286 3.714 13 N -0.553 5.553 14 C 0.635 3.365 15 O -0.600 6.600 16 C 0.117 3.883 17 C -0.129 4.129 18 C -0.117 4.117 19 C -0.039 4.039 20 N -0.747 5.747 21 C -0.202 4.202 22 H 0.073 0.927 23 C -0.056 4.056 24 N -0.980 5.980 25 Si 0.935 3.065 26 H -0.292 1.292 27 H -0.302 1.302 28 H -0.259 1.259 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.416 0.584 37 H 0.130 0.870 38 H 0.160 0.840 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.117 0.883 47 H 0.361 0.639 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.025 2.840 12.674 32.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.062 3.938 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.360 5.360 7 C 0.280 3.720 8 O -0.458 6.458 9 C 0.014 3.986 10 N -0.263 5.263 11 N -0.120 5.120 12 C 0.008 3.992 13 N -0.281 5.281 14 C 0.334 3.666 15 O -0.478 6.478 16 C -0.003 4.003 17 C -0.167 4.167 18 C -0.155 4.155 19 C -0.079 4.079 20 N -0.391 5.391 21 C -0.332 4.332 22 H 0.091 0.909 23 C -0.247 4.247 24 N -0.632 5.632 25 Si 0.766 3.234 26 H -0.219 1.219 27 H -0.229 1.229 28 H -0.184 1.184 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.253 0.747 37 H 0.148 0.852 38 H 0.178 0.822 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.140 0.860 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.138 0.862 45 H 0.144 0.856 46 H 0.135 0.865 47 H 0.194 0.806 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 29.425 2.234 12.744 32.145 hybrid contribution -0.263 0.156 -2.416 2.436 sum 29.163 2.390 10.328 31.030 Atomic orbital electron populations 1.21689 0.96116 1.00486 1.01738 1.21968 0.96322 0.96996 1.01619 1.20700 0.90735 0.93450 0.88923 0.91570 1.21625 0.94069 0.82598 1.01958 1.45897 1.06687 1.11099 1.72282 1.21281 0.82670 0.91950 0.76057 1.90667 1.56915 1.47356 1.50830 1.21413 0.74500 0.94644 1.08031 1.48446 1.05823 1.67868 1.04129 1.76740 1.02283 1.26010 1.06998 1.25418 0.95030 0.94783 0.84010 1.46306 1.07619 1.65961 1.08232 1.16882 0.82683 0.81601 0.85457 1.91033 1.81893 1.59821 1.15027 1.22213 0.78242 1.03962 0.95906 1.22030 0.97893 1.00954 0.95818 1.21762 0.97540 0.99816 0.96391 1.20903 0.86041 1.06560 0.94367 1.42864 1.15353 1.67655 1.13205 1.18967 0.91090 1.24849 0.98343 0.90882 1.25212 0.97718 1.01717 1.00086 1.69829 1.21439 1.44739 1.27179 0.85715 0.80313 0.76352 0.81059 1.21874 1.22894 1.18366 0.93613 0.92802 0.93515 0.90225 0.92963 0.89760 0.92907 0.74721 0.85233 0.82248 0.88744 0.90489 0.86029 0.90827 0.90401 0.86167 0.85605 0.86468 0.80607 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 9.18 71.98 0.66 -4.32 16 2 C -0.13 -4.05 5.61 30.59 0.17 -3.87 16 3 C 0.17 5.77 2.59 44.99 0.12 5.88 16 4 H 0.07 2.26 8.08 -2.38 -0.02 2.24 16 5 C 0.12 3.81 5.23 86.38 0.45 4.26 16 6 N -0.71 -21.83 5.39 -463.05 -2.49 -24.32 16 7 C 0.50 16.43 7.90 87.66 0.69 17.12 16 8 O -0.58 -23.61 16.43 -3.04 -0.05 -23.66 16 9 C 0.14 3.82 6.87 85.63 0.59 4.41 16 10 N -0.44 -13.71 3.12 -481.98 -1.50 -15.22 16 11 N -0.30 -7.82 12.51 -49.11 -0.61 -8.43 16 12 C 0.29 5.62 7.73 137.75 1.06 6.68 16 13 N -0.55 -13.01 3.13 -644.23 -2.02 -15.03 16 14 C 0.63 21.39 8.64 179.10 1.55 22.94 16 15 O -0.60 -24.85 17.83 -4.73 -0.08 -24.93 16 16 C 0.12 1.69 6.88 86.44 0.59 2.28 16 17 C -0.13 -0.67 5.94 30.77 0.18 -0.49 16 18 C -0.12 -0.26 5.96 30.83 0.18 -0.07 16 19 C -0.04 -0.27 6.32 30.13 0.19 -0.08 16 20 N -0.75 -31.63 4.31 -322.92 -1.39 -33.02 16 21 C -0.20 -10.40 8.24 84.03 0.69 -9.70 16 22 H 0.07 4.09 7.55 -2.91 -0.02 4.06 16 23 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 24 N -0.98 -60.73 13.97 21.65 0.30 -60.43 16 25 Si 0.94 45.58 27.74 68.60 1.90 47.48 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 27 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 28 H -0.26 -11.65 6.52 99.48 0.65 -11.00 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 2.02 5.99 -2.38 -0.01 2.00 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.42 12.22 8.14 -92.71 -0.75 11.46 16 37 H 0.13 3.42 8.12 -2.39 -0.02 3.40 16 38 H 0.16 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.07 0.49 8.10 -2.39 -0.02 0.47 16 43 H 0.08 0.19 8.11 -2.38 -0.02 0.17 16 44 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 46 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.36 15.66 5.66 -92.71 -0.52 15.13 16 48 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -85.10 391.65 1.30 -83.80 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.35 Total: 31.41 kcal Atomic # 6 Polarization: 34.75 SS G_CDS: 7.60 Total: 42.36 kcal Atomic # 7 Polarization: -148.73 SS G_CDS: -7.72 Total: -156.45 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -0.13 Total: -48.59 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.48 kcal Total: -85.10 1.30 -83.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269493400.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.725 kcal (2) G-P(sol) polarization free energy of solvation -85.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds