Wall clock time and date at job start Tue Mar 31 2020 20:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47158 * 2 1 4 4 N 1.46502 * 109.46921 * 180.02562 * 3 2 1 5 5 N 1.28446 * 125.18640 * 272.33089 * 4 3 2 6 6 C 1.30871 * 110.92102 * 179.97438 * 5 4 3 7 7 C 1.39671 * 107.86524 * 359.77533 * 6 5 4 8 8 C 1.36603 * 125.19017 * 92.31290 * 4 3 2 9 9 C 1.47156 * 126.88281 * 359.97438 * 8 4 3 10 10 O 1.21624 * 120.00279 * 5.33610 * 9 8 4 11 11 N 1.34781 * 119.99919 * 185.33432 * 9 8 4 12 12 C 1.46497 * 120.00100 * 174.55607 * 11 9 8 13 13 H 1.09003 * 109.46730 * 35.00611 * 12 11 9 14 14 C 1.53000 * 109.47497 * 275.00196 * 12 11 9 15 15 C 1.52998 * 109.46759 * 155.00035 * 12 11 9 16 16 N 1.46893 * 109.47630 * 305.00148 * 15 12 11 17 17 C 1.46906 * 111.00580 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47528 * 180.02562 * 17 16 15 19 19 O 1.21294 * 119.99570 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99859 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99714 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00310 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00150 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99701 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00364 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46753 * 59.99810 * 25 23 21 27 27 H 1.48499 * 109.46998 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47131 * 299.99794 * 25 23 21 29 29 H 1.09000 * 109.47113 * 299.99641 * 1 2 3 30 30 H 1.08997 * 109.47559 * 60.00053 * 1 2 3 31 31 H 1.09000 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47046 * 239.99411 * 2 1 3 33 33 H 1.09002 * 109.47081 * 119.99991 * 2 1 3 34 34 H 1.08995 * 109.47260 * 60.00284 * 3 2 1 35 35 H 1.09002 * 109.47117 * 299.99969 * 3 2 1 36 36 H 1.07998 * 126.06662 * 180.02562 * 6 5 4 37 37 H 1.07998 * 127.32109 * 180.26891 * 7 6 5 38 38 H 0.97001 * 119.99641 * 354.56400 * 11 9 8 39 39 H 1.08998 * 109.46585 * 60.00175 * 14 12 11 40 40 H 1.08998 * 109.47002 * 180.02562 * 14 12 11 41 41 H 1.08999 * 109.47035 * 300.00188 * 14 12 11 42 42 H 1.09003 * 109.47260 * 184.99924 * 15 12 11 43 43 H 1.09001 * 109.47182 * 65.00576 * 15 12 11 44 44 H 1.00897 * 111.00481 * 303.95523 * 16 15 12 45 45 H 1.09002 * 109.46674 * 300.00611 * 17 16 15 46 46 H 1.08997 * 109.47037 * 59.99892 * 17 16 15 47 47 H 0.97005 * 120.00339 * 0.02562 * 20 18 17 48 48 H 0.97004 * 120.00268 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.2456 1.3996 1.0480 6 6 5.5138 1.4121 0.7252 7 6 5.6009 1.4634 -0.6679 8 6 4.2918 1.4876 -1.1164 9 6 3.8382 1.5438 -2.5152 10 8 2.6531 1.6516 -2.7664 11 7 4.7362 1.4759 -3.5180 12 6 4.2783 1.4116 -4.9081 13 1 3.3756 2.0119 -5.0215 14 6 3.9743 -0.0415 -5.2783 15 6 5.3713 1.9549 -5.8306 16 7 5.7477 3.3079 -5.4000 17 6 6.7971 3.8631 -6.2652 18 6 7.1568 5.2483 -5.7933 19 8 6.5945 5.7260 -4.8305 20 7 8.1038 5.9560 -6.4404 21 6 8.4313 7.2160 -6.0107 22 1 7.9302 7.6417 -5.1539 23 6 9.4073 7.9459 -6.6781 24 7 10.0167 7.4281 -7.7209 25 14 9.8531 9.6630 -6.0931 26 1 10.3484 9.5964 -4.6947 27 1 10.9144 10.2238 -6.9674 28 1 8.6515 10.5334 -6.1517 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 6.3454 1.3834 1.4136 37 1 6.4989 1.4819 -1.2675 38 1 5.6856 1.4695 -3.3193 39 1 3.1957 -0.4285 -4.6211 40 1 3.6341 -0.0894 -6.3127 41 1 4.8771 -0.6418 -5.1649 42 1 4.9985 1.9900 -6.8543 43 1 6.2435 1.3029 -5.7839 44 1 4.9429 3.9158 -5.3728 45 1 7.6793 3.2243 -6.2219 46 1 6.4337 3.9115 -7.2917 47 1 8.5537 5.5738 -7.2101 48 1 10.6984 7.9375 -8.1866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274773842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:03 Heat of formation + Delta-G solvation = -28.889330 kcal Electronic energy + Delta-G solvation = -28870.019671 eV Core-core repulsion = 24767.294474 eV Total energy + Delta-G solvation = -4102.725197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.52553 -40.64875 -40.07650 -37.81513 -36.45151 -36.00102 -35.12376 -33.26296 -32.88833 -32.44155 -30.96604 -28.94141 -27.49595 -26.70292 -25.02404 -24.26349 -23.08937 -22.71687 -21.69262 -21.05479 -20.92724 -19.89202 -19.06965 -17.90174 -17.56295 -17.12705 -16.87531 -16.46509 -16.34050 -16.16280 -16.06522 -15.76010 -15.45819 -15.11928 -15.03071 -14.85335 -14.55637 -14.24596 -14.12595 -14.03308 -13.54294 -13.38847 -13.13498 -13.06502 -12.98512 -12.97590 -12.78352 -12.69735 -12.42451 -12.36881 -12.12696 -11.88387 -11.85911 -11.80647 -11.49314 -11.09305 -10.37234 -10.31149 -10.03960 -10.00055 -9.93428 -9.32657 -8.45813 -5.94067 0.23454 1.38238 1.39863 1.41913 1.52374 1.64800 2.08081 2.17271 2.24299 2.29715 2.91490 3.21836 3.50780 3.53466 3.63536 3.79341 3.84032 3.99480 4.13103 4.18651 4.22615 4.34318 4.39195 4.43543 4.50437 4.54679 4.61800 4.65345 4.67928 4.73948 4.78889 4.80638 4.85640 5.00046 5.04543 5.08439 5.26924 5.29304 5.41588 5.48114 5.56674 5.75082 5.88536 6.10598 6.33173 6.46675 6.61887 7.03911 7.14091 7.14306 7.58663 8.14588 8.71137 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.002247 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.346822 B =12460.803675 C =13567.764626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.109 3.891 4 N -0.265 5.265 5 N -0.300 5.300 6 C -0.008 4.008 7 C -0.182 4.182 8 C -0.058 4.058 9 C 0.590 3.410 10 O -0.575 6.575 11 N -0.682 5.682 12 C 0.147 3.853 13 H 0.069 0.931 14 C -0.152 4.152 15 C 0.053 3.947 16 N -0.680 5.680 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.274 1.274 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.215 0.785 37 H 0.183 0.817 38 H 0.414 0.586 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.339 0.661 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -20.002 7.732 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.011 4.011 4 N -0.053 5.053 5 N -0.133 5.133 6 C -0.184 4.184 7 C -0.211 4.211 8 C -0.187 4.187 9 C 0.376 3.624 10 O -0.455 6.455 11 N -0.332 5.332 12 C 0.043 3.957 13 H 0.088 0.912 14 C -0.211 4.211 15 C -0.076 4.076 16 N -0.312 5.312 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.512 6.512 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.232 0.768 37 H 0.200 0.800 38 H 0.252 0.748 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.157 0.843 45 H 0.129 0.871 46 H 0.085 0.915 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.692 -19.808 9.405 25.336 hybrid contribution 1.037 1.231 -1.483 2.189 sum -11.655 -18.577 7.922 23.317 Atomic orbital electron populations 1.21649 0.92396 1.03240 1.02772 1.21723 0.98334 0.93929 1.02124 1.22443 0.72096 1.00610 1.05912 1.45982 1.08124 1.49487 1.01669 1.73165 1.05208 1.20584 1.14296 1.24144 0.93669 1.04919 0.95635 1.22654 0.95823 1.06525 0.96081 1.21612 0.92384 1.14818 0.89851 1.17009 0.85599 0.76118 0.83664 1.90722 1.17448 1.52405 1.84973 1.45508 1.10074 1.72385 1.05281 1.21066 0.97298 0.97875 0.79488 0.91240 1.22071 1.02406 0.93985 1.02613 1.22399 0.98652 0.89586 0.96927 1.60074 1.13743 1.03944 1.53398 1.21541 0.97670 0.92048 0.95298 1.20987 0.82368 0.89063 0.85201 1.90512 1.56541 1.73131 1.30969 1.41922 1.34946 1.14927 1.29290 1.19584 1.20199 0.92680 1.13820 0.90584 1.25995 0.95889 1.03488 0.95852 1.69655 1.26300 1.39909 1.20093 0.85032 0.78053 0.77299 0.78227 1.19782 1.19439 1.19900 0.91139 0.92408 0.90896 0.92819 0.91311 0.87467 0.87588 0.76834 0.80015 0.74848 0.93484 0.89616 0.90643 0.91722 0.88186 0.84290 0.87054 0.91461 0.76897 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.12 -2.21 6.26 30.59 0.19 -2.02 16 3 C 0.11 2.35 5.92 86.38 0.51 2.86 16 4 N -0.26 -6.80 3.35 -334.68 -1.12 -7.92 16 5 N -0.30 -7.65 11.90 -57.14 -0.68 -8.33 16 6 C -0.01 -0.18 12.03 85.18 1.02 0.84 16 7 C -0.18 -3.97 10.50 22.66 0.24 -3.74 16 8 C -0.06 -1.51 6.96 40.78 0.28 -1.23 16 9 C 0.59 15.76 7.76 86.58 0.67 16.44 16 10 O -0.57 -17.84 14.25 -4.11 -0.06 -17.90 16 11 N -0.68 -14.75 4.79 -446.07 -2.14 -16.88 16 12 C 0.15 2.82 2.86 44.99 0.13 2.95 16 13 H 0.07 1.65 7.50 -2.39 -0.02 1.63 16 14 C -0.15 -2.20 9.48 71.98 0.68 -1.52 16 15 C 0.05 0.96 5.24 86.30 0.45 1.41 16 16 N -0.68 -18.86 5.85 -517.94 -3.03 -21.89 16 17 C 0.07 2.05 6.17 85.56 0.53 2.57 16 18 C 0.44 20.01 7.82 87.66 0.69 20.69 16 19 O -0.63 -34.17 15.78 -3.07 -0.05 -34.22 16 20 N -0.57 -28.70 5.29 -306.99 -1.62 -30.32 16 21 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -48.89 13.05 21.66 0.28 -48.61 16 25 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 2.59 6.08 -2.39 -0.01 2.58 16 36 H 0.22 3.01 8.06 -2.91 -0.02 2.98 16 37 H 0.18 3.01 7.58 -2.91 -0.02 2.99 16 38 H 0.41 7.96 7.63 -92.71 -0.71 7.25 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.34 10.89 8.43 -89.70 -0.76 10.13 16 45 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.40 18.70 7.90 -92.70 -0.73 17.97 16 48 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 Total: -1.00 -73.86 405.73 -0.19 -74.05 By element: Atomic # 1 Polarization: 48.46 SS G_CDS: -1.20 Total: 47.26 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 7.39 Total: 19.94 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -8.31 Total: -133.96 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.11 Total: -52.12 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -73.86 -0.19 -74.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274773842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.162 kcal (2) G-P(sol) polarization free energy of solvation -73.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds