Wall clock time and date at job start Tue Mar 31 2020 19:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47420 * 2 1 4 4 C 1.53004 * 109.47326 * 240.00170 * 2 1 3 5 5 C 1.53002 * 109.47282 * 120.00435 * 2 1 3 6 6 H 1.08999 * 109.47336 * 180.02562 * 5 2 1 7 7 C 1.52993 * 109.47169 * 59.99587 * 5 2 1 8 8 N 1.46905 * 109.47039 * 185.00340 * 7 5 2 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 O 1.21292 * 120.00024 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00095 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99386 * 359.97438 * 13 12 10 15 15 C 1.38941 * 120.00393 * 179.97438 * 13 12 10 16 16 N 1.31416 * 119.99786 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00292 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47103 * 119.99873 * 17 15 13 20 20 H 1.48494 * 109.47266 * 240.00292 * 17 15 13 21 21 N 1.46503 * 109.46578 * 299.99831 * 5 2 1 22 22 C 1.34775 * 120.00077 * 274.99776 * 21 5 2 23 23 O 1.21611 * 119.99854 * 0.02562 * 22 21 5 24 24 C 1.47414 * 120.00331 * 180.02562 * 22 21 5 25 25 N 1.31612 * 125.85915 * 0.02562 * 24 22 21 26 26 C 1.33102 * 109.09174 * 179.97438 * 25 24 22 27 27 C 1.35559 * 108.35337 * 359.97438 * 26 25 24 28 28 N 1.35407 * 107.15727 * 359.77389 * 27 26 25 29 29 H 0.97007 * 126.43806 * 180.21397 * 28 27 26 30 30 H 1.08998 * 109.46976 * 300.00050 * 1 2 3 31 31 H 1.09003 * 109.47448 * 59.99636 * 1 2 3 32 32 H 1.08996 * 109.47329 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47364 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47274 * 300.00298 * 3 2 1 35 35 H 1.08998 * 109.47087 * 60.00018 * 3 2 1 36 36 H 1.09005 * 109.46825 * 300.00307 * 4 2 1 37 37 H 1.09003 * 109.46699 * 59.99736 * 4 2 1 38 38 H 1.08997 * 109.47606 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.47393 * 65.00621 * 7 5 2 40 40 H 1.08998 * 109.47408 * 305.00267 * 7 5 2 41 41 H 1.00901 * 110.99869 * 56.04956 * 8 7 5 42 42 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 43 43 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 44 44 H 0.96997 * 120.00713 * 359.97438 * 12 10 9 45 45 H 0.97001 * 119.99428 * 179.97438 * 16 15 13 46 46 H 0.97003 * 120.00365 * 94.99970 * 21 5 2 47 47 H 1.08000 * 125.82082 * 180.02562 * 26 25 24 48 48 H 1.07998 * 126.42200 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7210 1.2494 7 6 1.5299 -2.1638 1.2492 8 7 1.9186 -2.8206 2.5044 9 6 1.4451 -4.2108 2.5396 10 6 1.8611 -4.8503 3.8393 11 8 2.4904 -4.2110 4.6556 12 7 1.5346 -6.1328 4.0940 13 6 1.9135 -6.7148 5.2761 14 1 2.4739 -6.1456 6.0030 15 6 1.5765 -8.0369 5.5390 16 7 0.8951 -8.7297 4.6543 17 14 2.0933 -8.8301 7.1493 18 1 2.8454 -7.8450 7.9674 19 1 0.8864 -9.2718 7.8933 20 1 2.9584 -10.0037 6.8678 21 7 1.5516 -0.0307 2.4454 22 6 2.2284 1.0261 2.9369 23 8 3.2443 1.4066 2.3872 24 6 1.7374 1.7207 4.1408 25 7 0.6571 1.4081 4.8246 26 6 0.5293 2.2516 5.8463 27 6 1.5635 3.1273 5.8087 28 7 2.3292 2.7956 4.7424 29 1 3.1434 3.2394 4.4574 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1392 38 1 3.1300 -0.7216 -1.2491 39 1 1.9645 -2.7029 0.4074 40 1 0.4436 -2.1651 1.1596 41 1 1.5817 -2.3032 3.3025 42 1 0.3582 -4.2266 2.4589 43 1 1.8795 -4.7637 1.7068 44 1 1.0317 -6.6442 3.4410 45 1 0.6602 -9.6528 4.8377 46 1 0.7411 -0.3340 2.8837 47 1 -0.2626 2.2397 6.5804 48 1 1.7446 3.9357 6.5015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284585715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:23 Heat of formation + Delta-G solvation = -16.695109 kcal Electronic energy + Delta-G solvation = -29669.877172 eV Core-core repulsion = 25567.680756 eV Total energy + Delta-G solvation = -4102.196416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42187 -40.31357 -38.28240 -37.64992 -35.09756 -33.96415 -33.66184 -32.73403 -31.19606 -30.22176 -28.99778 -27.46619 -27.16380 -26.08226 -24.24525 -23.53398 -21.98308 -21.78405 -20.69064 -19.36071 -19.25295 -18.55813 -17.83842 -16.79952 -16.33760 -16.22504 -15.85025 -15.39263 -15.24763 -14.55545 -14.48579 -14.26447 -14.16114 -14.10973 -13.88231 -13.76100 -13.66254 -13.44307 -13.03617 -12.51615 -12.44118 -12.26814 -11.85725 -11.75998 -11.61493 -11.49501 -11.37142 -11.22386 -11.02941 -10.87751 -10.59302 -10.52745 -10.49558 -10.32202 -10.32000 -10.19638 -9.49060 -9.16410 -8.79535 -8.42171 -8.03377 -7.92661 -6.39099 -3.79574 1.17745 2.37368 2.42442 3.18491 3.28283 3.28856 3.33750 3.36506 3.94029 4.03289 4.14510 4.28222 4.60756 4.71264 4.77045 4.81003 5.00069 5.04650 5.11856 5.13437 5.25132 5.29671 5.36911 5.49920 5.55808 5.61876 5.68297 5.70526 5.76684 5.81446 5.83161 5.91659 5.96405 5.97502 6.07949 6.17405 6.28962 6.30148 6.31569 6.41048 6.85978 7.18800 7.24402 7.58299 7.61718 7.65120 8.01629 8.09662 8.64538 9.21166 9.57544 10.09295 10.78829 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.002825 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.986571 B = 9910.872734 C =11910.224477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.131 4.131 4 C -0.142 4.142 5 C 0.160 3.840 6 H 0.101 0.899 7 C 0.046 3.954 8 N -0.668 5.668 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.297 4.297 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 N -0.692 5.692 22 C 0.612 3.388 23 O -0.537 6.537 24 C 0.146 3.854 25 N -0.441 5.441 26 C -0.026 4.026 27 C -0.027 4.027 28 N -0.525 5.525 29 H 0.429 0.571 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.039 0.961 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.409 0.591 47 H 0.179 0.821 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 22.590 -8.261 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.188 4.188 4 C -0.199 4.199 5 C 0.056 3.944 6 H 0.119 0.881 7 C -0.084 4.084 8 N -0.301 5.301 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.201 5.201 13 C -0.427 4.427 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 N -0.343 5.343 22 C 0.396 3.604 23 O -0.414 6.414 24 C -0.116 4.116 25 N -0.163 5.163 26 C -0.179 4.179 27 C -0.166 4.166 28 N -0.127 5.127 29 H 0.269 0.731 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.245 0.755 47 H 0.196 0.804 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.639 22.215 -8.548 23.859 hybrid contribution -0.606 0.070 1.013 1.182 sum -2.245 22.286 -7.535 23.632 Atomic orbital electron populations 1.21950 0.94468 1.02029 1.01829 1.20952 0.95991 0.96346 0.94720 1.21887 1.01760 0.94457 1.00722 1.21899 1.01457 1.00298 0.96295 1.21192 1.00796 0.89787 0.82648 0.88096 1.22421 0.98348 0.92979 0.94613 1.60028 1.64372 1.02002 1.03684 1.21682 0.97763 0.90121 0.98646 1.19809 0.85534 0.83342 0.88679 1.90537 1.43905 1.63127 1.48913 1.41860 1.49631 1.09943 1.18705 1.19754 1.32669 0.94978 0.95297 0.87909 1.25250 0.96982 0.96444 0.99305 1.69624 1.39118 1.10459 1.35206 0.85808 0.78262 0.78983 0.81347 1.19231 1.20784 1.20765 1.45582 1.28906 1.30511 1.29256 1.16313 0.83080 0.80183 0.80822 1.90841 1.24422 1.66099 1.60004 1.22737 0.94795 0.93678 1.00343 1.70225 1.15147 1.24962 1.05982 1.22522 1.00931 0.94824 0.99662 1.22987 0.95343 1.04423 0.93844 1.42936 1.22880 1.24903 1.22004 0.73134 0.92569 0.92694 0.92132 0.91734 0.93546 0.93084 0.92074 0.92459 0.92198 0.89123 0.94352 0.83040 0.93801 0.89496 0.77483 0.91971 0.75455 0.80421 0.79689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 7.97 37.15 0.30 -0.97 16 2 C -0.08 -0.75 0.62 -154.51 -0.10 -0.84 16 3 C -0.13 -1.36 7.00 37.16 0.26 -1.10 16 4 C -0.14 -1.19 8.12 37.16 0.30 -0.89 16 5 C 0.16 1.84 1.84 -67.93 -0.12 1.72 16 6 H 0.10 1.39 7.57 -51.93 -0.39 0.99 16 7 C 0.05 0.54 4.58 -3.82 -0.02 0.53 16 8 N -0.67 -10.82 6.12 -115.06 -0.70 -11.52 16 9 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 10 C 0.44 10.57 7.82 -10.99 -0.09 10.48 16 11 O -0.58 -16.16 15.78 5.55 0.09 -16.07 16 12 N -0.56 -14.46 5.29 -10.96 -0.06 -14.51 16 13 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 14 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 17 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 N -0.69 -8.30 3.47 -54.89 -0.19 -8.49 16 22 C 0.61 8.09 6.17 -12.53 -0.08 8.01 16 23 O -0.54 -7.88 14.21 5.27 0.07 -7.81 16 24 C 0.15 1.81 7.95 -154.53 -1.23 0.58 16 25 N -0.44 -5.63 10.89 -11.26 -0.12 -5.75 16 26 C -0.03 -0.26 11.85 -17.96 -0.21 -0.47 16 27 C -0.03 -0.21 12.00 -16.93 -0.20 -0.41 16 28 N -0.53 -4.90 6.14 -10.78 -0.07 -4.96 16 29 H 0.43 3.09 8.96 -40.82 -0.37 2.72 16 30 H 0.06 0.52 7.60 -51.93 -0.39 0.13 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.50 6.32 -51.93 -0.33 0.17 16 33 H 0.06 0.75 7.53 -51.93 -0.39 0.36 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.59 5.77 -51.93 -0.30 0.29 16 36 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.99 6.71 -51.93 -0.35 0.65 16 40 H 0.04 0.41 6.17 -51.93 -0.32 0.09 16 41 H 0.35 6.03 7.28 -39.29 -0.29 5.75 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.41 4.81 7.83 -40.82 -0.32 4.49 16 47 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.19 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -34.53 389.73 -7.87 -42.40 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -7.00 Total: 19.16 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -1.46 Total: 9.41 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -0.42 Total: -69.25 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.16 Total: -23.87 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.53 -7.87 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284585715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.704 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds