Wall clock time and date at job start Tue Mar 31 2020 19:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47420 * 2 1 4 4 C 1.53004 * 109.47326 * 240.00170 * 2 1 3 5 5 C 1.53002 * 109.47282 * 120.00435 * 2 1 3 6 6 H 1.08999 * 109.47336 * 180.02562 * 5 2 1 7 7 C 1.52993 * 109.47169 * 59.99587 * 5 2 1 8 8 N 1.46905 * 109.47039 * 185.00340 * 7 5 2 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 O 1.21292 * 120.00024 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00095 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99386 * 359.97438 * 13 12 10 15 15 C 1.38941 * 120.00393 * 179.97438 * 13 12 10 16 16 N 1.31416 * 119.99786 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00292 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47103 * 119.99873 * 17 15 13 20 20 H 1.48494 * 109.47266 * 240.00292 * 17 15 13 21 21 N 1.46503 * 109.46578 * 299.99831 * 5 2 1 22 22 C 1.34775 * 120.00077 * 274.99776 * 21 5 2 23 23 O 1.21611 * 119.99854 * 0.02562 * 22 21 5 24 24 C 1.47414 * 120.00331 * 180.02562 * 22 21 5 25 25 N 1.31612 * 125.85915 * 0.02562 * 24 22 21 26 26 C 1.33102 * 109.09174 * 179.97438 * 25 24 22 27 27 C 1.35559 * 108.35337 * 359.97438 * 26 25 24 28 28 N 1.35407 * 107.15727 * 359.77389 * 27 26 25 29 29 H 0.97007 * 126.43806 * 180.21397 * 28 27 26 30 30 H 1.08998 * 109.46976 * 300.00050 * 1 2 3 31 31 H 1.09003 * 109.47448 * 59.99636 * 1 2 3 32 32 H 1.08996 * 109.47329 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47364 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47274 * 300.00298 * 3 2 1 35 35 H 1.08998 * 109.47087 * 60.00018 * 3 2 1 36 36 H 1.09005 * 109.46825 * 300.00307 * 4 2 1 37 37 H 1.09003 * 109.46699 * 59.99736 * 4 2 1 38 38 H 1.08997 * 109.47606 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.47393 * 65.00621 * 7 5 2 40 40 H 1.08998 * 109.47408 * 305.00267 * 7 5 2 41 41 H 1.00901 * 110.99869 * 56.04956 * 8 7 5 42 42 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 43 43 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 44 44 H 0.96997 * 120.00713 * 359.97438 * 12 10 9 45 45 H 0.97001 * 119.99428 * 179.97438 * 16 15 13 46 46 H 0.97003 * 120.00365 * 94.99970 * 21 5 2 47 47 H 1.08000 * 125.82082 * 180.02562 * 26 25 24 48 48 H 1.07998 * 126.42200 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7210 1.2494 7 6 1.5299 -2.1638 1.2492 8 7 1.9186 -2.8206 2.5044 9 6 1.4451 -4.2108 2.5396 10 6 1.8611 -4.8503 3.8393 11 8 2.4904 -4.2110 4.6556 12 7 1.5346 -6.1328 4.0940 13 6 1.9135 -6.7148 5.2761 14 1 2.4739 -6.1456 6.0030 15 6 1.5765 -8.0369 5.5390 16 7 0.8951 -8.7297 4.6543 17 14 2.0933 -8.8301 7.1493 18 1 2.8454 -7.8450 7.9674 19 1 0.8864 -9.2718 7.8933 20 1 2.9584 -10.0037 6.8678 21 7 1.5516 -0.0307 2.4454 22 6 2.2284 1.0261 2.9369 23 8 3.2443 1.4066 2.3872 24 6 1.7374 1.7207 4.1408 25 7 0.6571 1.4081 4.8246 26 6 0.5293 2.2516 5.8463 27 6 1.5635 3.1273 5.8087 28 7 2.3292 2.7956 4.7424 29 1 3.1434 3.2394 4.4574 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1392 38 1 3.1300 -0.7216 -1.2491 39 1 1.9645 -2.7029 0.4074 40 1 0.4436 -2.1651 1.1596 41 1 1.5817 -2.3032 3.3025 42 1 0.3582 -4.2266 2.4589 43 1 1.8795 -4.7637 1.7068 44 1 1.0317 -6.6442 3.4410 45 1 0.6602 -9.6528 4.8377 46 1 0.7411 -0.3340 2.8837 47 1 -0.2626 2.2397 6.5804 48 1 1.7446 3.9357 6.5015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284585715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:22 Heat of formation + Delta-G solvation = -43.951112 kcal Electronic energy + Delta-G solvation = -29671.059081 eV Core-core repulsion = 25567.680756 eV Total energy + Delta-G solvation = -4103.378325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.19980 -41.25405 -40.10198 -38.68442 -36.41731 -35.73301 -34.78740 -33.57215 -33.25159 -31.10339 -30.08429 -28.17928 -28.06938 -27.54344 -25.80717 -24.59931 -22.98719 -22.51969 -21.58579 -21.10720 -20.14745 -19.94026 -19.38201 -17.94693 -17.64855 -17.15003 -16.91996 -16.86038 -16.41051 -16.18665 -15.78626 -15.43946 -15.26520 -15.03164 -14.93492 -14.86109 -14.54161 -14.51844 -14.24892 -14.00747 -13.52593 -13.38792 -13.14468 -13.05146 -12.87009 -12.71702 -12.56999 -12.40640 -12.28568 -12.13222 -12.08003 -11.68079 -11.51222 -11.42823 -11.35169 -11.31599 -11.29738 -10.36271 -10.08316 -10.00612 -9.54131 -9.30186 -8.46522 -5.94957 0.34352 1.36490 1.41641 1.55831 1.57275 1.65164 2.06188 2.29250 2.38009 2.54160 2.87587 3.20894 3.29293 3.48396 3.74515 3.88668 3.98812 4.07556 4.19471 4.29843 4.35578 4.36831 4.47227 4.49935 4.54437 4.61392 4.71282 4.77953 4.83846 4.91354 4.96410 4.99066 5.07380 5.08882 5.20871 5.29637 5.37625 5.41430 5.49841 5.55089 5.62197 5.87041 6.09350 6.15779 6.31707 6.34701 6.61081 6.80624 7.07215 7.13542 7.57094 8.13169 8.71114 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.002825 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.986571 B = 9910.872734 C =11910.224477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.124 4.124 4 C -0.140 4.140 5 C 0.164 3.836 6 H 0.074 0.926 7 C 0.051 3.949 8 N -0.685 5.685 9 C 0.065 3.935 10 C 0.436 3.564 11 O -0.625 6.625 12 N -0.572 5.572 13 C -0.334 4.334 14 H 0.076 0.924 15 C -0.012 4.012 16 N -0.919 5.919 17 Si 0.991 3.009 18 H -0.275 1.275 19 H -0.269 1.269 20 H -0.270 1.270 21 N -0.688 5.688 22 C 0.608 3.392 23 O -0.562 6.562 24 C 0.108 3.892 25 N -0.465 5.465 26 C -0.056 4.056 27 C 0.003 3.997 28 N -0.520 5.520 29 H 0.438 0.562 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.340 0.660 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.410 0.590 47 H 0.199 0.801 48 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 22.968 -8.654 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.182 4.182 4 C -0.198 4.198 5 C 0.059 3.941 6 H 0.092 0.908 7 C -0.077 4.077 8 N -0.318 5.318 9 C -0.067 4.067 10 C 0.224 3.776 11 O -0.512 6.512 12 N -0.209 5.209 13 C -0.463 4.463 14 H 0.094 0.906 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.815 3.185 18 H -0.200 1.200 19 H -0.194 1.194 20 H -0.195 1.195 21 N -0.338 5.338 22 C 0.393 3.607 23 O -0.441 6.441 24 C -0.152 4.152 25 N -0.188 5.188 26 C -0.208 4.208 27 C -0.137 4.137 28 N -0.122 5.122 29 H 0.279 0.721 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.078 0.922 41 H 0.159 0.841 42 H 0.089 0.911 43 H 0.127 0.873 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.246 0.754 47 H 0.216 0.784 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.681 22.575 -8.997 24.449 hybrid contribution -0.293 0.052 1.187 1.224 sum -2.974 22.627 -7.810 24.121 Atomic orbital electron populations 1.21917 0.93347 1.02623 1.01980 1.20899 0.96730 0.95522 0.94177 1.21801 1.00548 0.95213 1.00588 1.21899 1.01082 1.00827 0.95975 1.21158 0.99316 0.90084 0.83519 0.90770 1.22507 0.99739 0.92628 0.92868 1.60013 1.65191 1.01531 1.05091 1.21558 0.99409 0.90585 0.95144 1.20948 0.83864 0.82572 0.90257 1.90505 1.45619 1.64002 1.51070 1.41912 1.50063 1.10728 1.18239 1.19677 1.34349 0.95895 0.96395 0.90624 1.26008 0.96457 0.96266 1.02417 1.69675 1.38993 1.10933 1.36417 0.84894 0.78283 0.77903 0.77393 1.20016 1.19436 1.19549 1.45572 1.28697 1.30191 1.29335 1.16526 0.82824 0.80294 0.81097 1.90811 1.25443 1.66919 1.60920 1.22558 0.95988 0.95555 1.01118 1.70145 1.15570 1.26131 1.07003 1.23088 1.02637 0.95262 0.99845 1.23750 0.93326 1.03893 0.92688 1.43033 1.23133 1.24051 1.22027 0.72111 0.93474 0.91530 0.91252 0.93506 0.92133 0.94615 0.91102 0.91151 0.92889 0.87666 0.92168 0.84058 0.91063 0.87304 0.76873 0.91279 0.75365 0.78385 0.75046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.97 71.98 0.57 -1.64 16 2 C -0.07 -1.30 0.62 -52.18 -0.03 -1.33 16 3 C -0.12 -2.59 7.00 71.98 0.50 -2.09 16 4 C -0.14 -2.12 8.12 71.98 0.58 -1.53 16 5 C 0.16 3.76 1.84 44.99 0.08 3.84 16 6 H 0.07 2.12 7.57 -2.39 -0.02 2.11 16 7 C 0.05 1.14 4.58 86.30 0.40 1.53 16 8 N -0.69 -21.90 6.12 -517.93 -3.17 -25.06 16 9 C 0.07 2.21 6.17 85.56 0.53 2.74 16 10 C 0.44 21.14 7.82 87.66 0.69 21.82 16 11 O -0.63 -35.89 15.78 -3.07 -0.05 -35.94 16 12 N -0.57 -29.68 5.29 -306.99 -1.62 -31.31 16 13 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 14 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 15 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 16 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 17 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 N -0.69 -17.05 3.47 -445.81 -1.55 -18.60 16 22 C 0.61 16.85 6.17 86.66 0.53 17.39 16 23 O -0.56 -17.43 14.21 -4.07 -0.06 -17.49 16 24 C 0.11 2.74 7.95 136.28 1.08 3.82 16 25 N -0.47 -12.05 10.89 -189.53 -2.06 -14.11 16 26 C -0.06 -1.05 11.85 83.88 0.99 -0.05 16 27 C 0.00 0.05 12.00 83.52 1.00 1.05 16 28 N -0.52 -9.39 6.14 -188.02 -1.16 -10.55 16 29 H 0.44 6.10 8.96 -92.70 -0.83 5.27 16 30 H 0.05 0.83 7.60 -2.39 -0.02 0.81 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.96 6.32 -2.39 -0.02 0.95 16 33 H 0.05 1.13 7.53 -2.39 -0.02 1.11 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.03 0.85 5.77 -2.39 -0.01 0.83 16 36 H 0.07 0.94 6.54 -2.38 -0.02 0.92 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 2.06 6.71 -2.39 -0.02 2.04 16 40 H 0.06 1.11 6.17 -2.39 -0.01 1.10 16 41 H 0.34 11.92 7.28 -89.69 -0.65 11.27 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 45 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.41 9.94 7.83 -92.71 -0.73 9.22 16 47 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 48 H 0.23 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -77.43 389.73 -1.05 -78.47 By element: Atomic # 1 Polarization: 53.55 SS G_CDS: -1.91 Total: 51.65 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 8.22 Total: 26.93 kcal Atomic # 7 Polarization: -139.87 SS G_CDS: -9.28 Total: -149.14 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.11 Total: -53.43 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -77.43 -1.05 -78.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284585715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.522 kcal (2) G-P(sol) polarization free energy of solvation -77.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds