Wall clock time and date at job start Tue Mar 31 2020 20:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 N 1.46903 * 109.47158 * 180.94342 * 3 2 1 5 5 C 1.46904 * 110.99853 * 58.56291 * 4 3 2 6 6 C 1.52992 * 109.47537 * 66.04455 * 5 4 3 7 7 N 1.46502 * 109.47373 * 179.97438 * 6 5 4 8 8 C 1.34769 * 119.99948 * 180.02562 * 7 6 5 9 9 O 1.21633 * 120.00181 * 4.21597 * 8 7 6 10 10 C 1.47168 * 119.99949 * 184.20686 * 8 7 6 11 11 C 1.38404 * 126.87972 * 5.43114 * 10 8 7 12 12 C 1.39678 * 105.35552 * 179.97438 * 11 10 8 13 13 N 1.30862 * 107.86344 * 359.97438 * 12 11 10 14 14 N 1.28447 * 110.92744 * 0.02562 * 13 12 11 15 15 C 1.46504 * 125.18989 * 179.73630 * 14 13 12 16 16 C 1.46894 * 110.99935 * 294.60573 * 4 3 2 17 17 C 1.50697 * 109.47383 * 288.23728 * 16 4 3 18 18 O 1.21290 * 119.99896 * 358.70111 * 17 16 4 19 19 N 1.34774 * 120.00136 * 178.70496 * 17 16 4 20 20 C 1.37101 * 120.00263 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99349 * 359.97438 * 20 19 17 22 22 C 1.38941 * 120.00377 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00215 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00142 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46844 * 89.99744 * 24 22 20 26 26 H 1.48493 * 109.47390 * 209.99848 * 24 22 20 27 27 H 1.48498 * 109.46961 * 330.00552 * 24 22 20 28 28 H 1.08998 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46857 * 299.99669 * 1 2 3 30 30 H 1.08998 * 109.46853 * 59.99441 * 1 2 3 31 31 H 1.09002 * 109.46857 * 240.00331 * 2 1 3 32 32 H 1.08994 * 109.47454 * 120.00157 * 2 1 3 33 33 H 1.08998 * 109.47270 * 60.94355 * 3 2 1 34 34 H 1.09007 * 109.46985 * 300.94210 * 3 2 1 35 35 H 1.09003 * 109.46891 * 306.04495 * 5 4 3 36 36 H 1.08997 * 109.46894 * 186.05028 * 5 4 3 37 37 H 1.09003 * 109.46998 * 60.00105 * 6 5 4 38 38 H 1.08997 * 109.47496 * 300.00203 * 6 5 4 39 39 H 0.97003 * 119.99307 * 0.02562 * 7 6 5 40 40 H 1.07993 * 127.32168 * 359.96864 * 11 10 8 41 41 H 1.07998 * 126.06772 * 179.97438 * 12 11 10 42 42 H 1.08994 * 109.47015 * 87.49008 * 15 14 13 43 43 H 1.08997 * 109.46698 * 207.49124 * 15 14 13 44 44 H 1.09000 * 109.46900 * 327.48750 * 15 14 13 45 45 H 1.09004 * 109.47380 * 48.23687 * 16 4 3 46 46 H 1.08998 * 109.47416 * 168.23309 * 16 4 3 47 47 H 0.97002 * 119.99981 * 359.97438 * 19 17 16 48 48 H 0.96995 * 119.99820 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0228 5 6 4.0170 0.7338 -1.2049 6 6 3.6334 1.5076 -2.4677 7 7 4.1407 0.8009 -3.6465 8 6 3.9211 1.3014 -4.8784 9 8 3.3693 2.3775 -5.0083 10 6 4.3492 0.5459 -6.0666 11 6 4.8902 -0.7278 -6.0906 12 6 5.1290 -1.0029 -7.4391 13 7 4.7508 0.0391 -8.1345 14 7 4.2914 0.9608 -7.3668 15 6 3.7877 2.2610 -7.8165 16 6 4.0546 0.8648 1.2126 17 6 3.8371 1.8238 2.3545 18 8 3.3033 2.8943 2.1542 19 7 4.2359 1.4920 3.5984 20 6 4.0376 2.3642 4.6375 21 1 3.5623 3.3174 4.4590 22 6 4.4482 2.0219 5.9199 23 7 4.2586 2.8582 6.9157 24 14 5.2698 0.3729 6.2287 25 1 6.7390 0.5134 6.0639 26 1 4.9677 -0.0796 7.6103 27 1 4.7560 -0.6257 5.2571 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6906 1.9515 0.8983 34 1 1.6629 1.9612 -0.8815 35 1 3.5821 -0.2649 -1.2445 36 1 5.1024 0.6551 -1.1426 37 1 4.0684 2.5062 -2.4281 38 1 2.5480 1.5862 -2.5300 39 1 4.6346 -0.0271 -3.5402 40 1 5.0861 -1.3720 -5.2463 41 1 5.5510 -1.9139 -7.8371 42 1 2.7286 2.1760 -8.0595 43 1 3.9206 2.9962 -7.0230 44 1 4.3393 2.5779 -8.7016 45 1 3.5491 -0.0767 1.4276 46 1 5.1222 0.6838 1.0884 47 1 4.6625 0.6357 3.7587 48 1 4.5449 2.6190 7.8111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317537758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:03 Heat of formation + Delta-G solvation = 22.487955 kcal Electronic energy + Delta-G solvation = -28789.925208 eV Core-core repulsion = 24689.427898 eV Total energy + Delta-G solvation = -4100.497311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.88872 -39.84364 -39.06129 -37.38188 -35.24454 -33.92943 -33.61986 -32.79693 -31.70321 -31.53844 -29.46165 -27.51790 -27.30736 -25.46618 -24.18255 -23.13356 -22.75112 -21.75834 -20.65335 -20.06191 -19.25787 -18.33258 -18.18294 -16.73116 -16.70403 -16.14538 -16.02599 -15.87600 -15.51476 -15.17652 -14.85240 -14.72365 -14.21680 -14.01531 -13.83591 -13.76100 -13.67741 -13.28111 -13.21080 -13.14322 -12.77760 -12.70322 -12.30901 -11.98135 -11.72978 -11.68166 -11.57082 -11.40116 -11.23718 -11.22141 -11.07066 -10.61022 -10.45663 -10.37571 -9.98037 -9.68457 -9.54411 -9.45073 -9.31197 -8.61594 -8.17886 -7.98301 -6.31019 -3.82415 0.87544 1.98120 2.22494 2.78612 2.85264 3.00679 3.05500 3.13990 3.73931 3.89880 4.09555 4.15298 4.22743 4.63756 4.69832 4.77342 4.80789 4.86202 4.89056 4.97730 5.08580 5.14617 5.20946 5.23065 5.25303 5.31264 5.33362 5.45215 5.56608 5.67008 5.74155 5.76614 5.87688 5.91884 5.93432 6.00493 6.08405 6.13137 6.20846 6.30171 6.46902 6.99836 7.08402 7.18826 7.58314 7.63293 7.76645 8.14695 8.60463 8.95745 9.42602 9.84020 10.82181 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.002002 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.348404 B =13984.071342 C =14262.630524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.166 4.166 3 C 0.049 3.951 4 N -0.507 5.507 5 C 0.039 3.961 6 C 0.124 3.876 7 N -0.711 5.711 8 C 0.591 3.409 9 O -0.536 6.536 10 C -0.037 4.037 11 C -0.190 4.190 12 C -0.003 4.003 13 N -0.279 5.279 14 N -0.257 5.257 15 C 0.083 3.917 16 C 0.040 3.960 17 C 0.454 3.546 18 O -0.556 6.556 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.403 0.597 40 H 0.161 0.839 41 H 0.187 0.813 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.055 0.945 46 H 0.089 0.911 47 H 0.369 0.631 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -12.179 -25.411 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.205 4.205 3 C -0.078 4.078 4 N -0.229 5.229 5 C -0.090 4.090 6 C 0.000 4.000 7 N -0.363 5.363 8 C 0.376 3.624 9 O -0.414 6.414 10 C -0.166 4.166 11 C -0.219 4.219 12 C -0.179 4.179 13 N -0.112 5.112 14 N -0.044 5.044 15 C -0.057 4.057 16 C -0.092 4.092 17 C 0.239 3.761 18 O -0.437 6.437 19 N -0.233 5.233 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.237 0.763 40 H 0.179 0.821 41 H 0.204 0.796 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.032 -9.527 -26.547 28.204 hybrid contribution 0.765 -3.001 1.385 3.393 sum 0.733 -12.527 -25.161 28.117 Atomic orbital electron populations 1.21647 0.95323 1.01297 1.02121 1.22229 0.97024 0.99651 1.01624 1.22427 0.86112 0.94781 1.04510 1.61649 1.08194 1.53035 1.00052 1.22298 1.00838 0.95674 0.90204 1.21404 0.99883 0.96706 0.81979 1.45576 1.57466 1.27988 1.05257 1.16844 0.78992 0.84503 0.82071 1.90818 1.43091 1.21126 1.86316 1.21426 1.10937 0.97172 0.87064 1.22265 1.05585 0.95257 0.98820 1.23594 1.04725 0.98357 0.91193 1.73239 1.15251 0.98885 1.23862 1.45658 1.42388 1.13714 1.02650 1.22395 1.00595 0.79490 1.03195 1.21952 1.00629 0.96266 0.90317 1.19610 0.84629 0.88765 0.83080 1.90560 1.45656 1.24286 1.83227 1.42209 1.55387 1.18072 1.07616 1.19415 1.37673 1.00854 0.85218 0.86279 1.25036 0.97904 0.97940 0.95365 1.69622 1.46548 1.35574 1.00470 0.86677 0.80367 0.83657 0.78691 1.19642 1.20245 1.19587 0.93114 0.92267 0.92820 0.92209 0.91803 0.88386 0.90780 0.93706 0.90153 0.89742 0.90777 0.76256 0.82114 0.79565 0.89581 0.86975 0.88848 0.92676 0.89305 0.79820 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.17 -1.91 5.29 -26.73 -0.14 -2.05 16 3 C 0.05 0.70 4.77 -3.82 -0.02 0.68 16 4 N -0.51 -7.25 4.34 -236.07 -1.02 -8.28 16 5 C 0.04 0.39 4.80 -3.83 -0.02 0.37 16 6 C 0.12 1.27 5.60 -4.04 -0.02 1.25 16 7 N -0.71 -6.00 5.54 -61.47 -0.34 -6.34 16 8 C 0.59 6.30 7.79 -12.64 -0.10 6.20 16 9 O -0.54 -7.31 14.71 5.25 0.08 -7.23 16 10 C -0.04 -0.36 6.96 -82.06 -0.57 -0.93 16 11 C -0.19 -1.39 10.50 -38.98 -0.41 -1.80 16 12 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 13 N -0.28 -2.80 11.90 30.59 0.36 -2.44 16 14 N -0.26 -2.54 3.75 -63.88 -0.24 -2.78 16 15 C 0.08 0.62 10.84 59.85 0.65 1.27 16 16 C 0.04 0.61 5.34 -4.98 -0.03 0.59 16 17 C 0.45 9.90 7.45 -10.99 -0.08 9.82 16 18 O -0.56 -14.46 14.47 5.55 0.08 -14.38 16 19 N -0.59 -13.71 5.09 -10.97 -0.06 -13.77 16 20 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 21 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.09 5.50 -17.47 -0.10 1.00 16 23 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 24 Si 0.88 19.04 27.74 -169.99 -4.71 14.33 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.59 6.20 -51.93 -0.32 0.27 16 32 H 0.06 0.78 6.36 -51.93 -0.33 0.45 16 33 H 0.10 1.76 6.39 -51.93 -0.33 1.43 16 34 H 0.07 0.98 6.54 -51.93 -0.34 0.64 16 35 H 0.04 0.38 5.94 -51.93 -0.31 0.07 16 36 H 0.08 0.71 7.86 -51.93 -0.41 0.31 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.83 6.58 -51.93 -0.34 0.49 16 39 H 0.40 2.22 7.54 -40.82 -0.31 1.91 16 40 H 0.16 0.65 7.62 -52.49 -0.40 0.25 16 41 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.11 0.93 6.29 -51.93 -0.33 0.61 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.75 6.02 -51.93 -0.31 0.44 16 46 H 0.09 1.17 7.81 -51.93 -0.41 0.77 16 47 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 48 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -35.46 388.67 -6.93 -42.39 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.88 Total: 11.04 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.83 Total: 6.38 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.52 Total: -58.39 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.16 Total: -21.61 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.46 -6.93 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317537758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.879 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds