Wall clock time and date at job start Tue Mar 31 2020 20:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 N 1.46903 * 109.47158 * 180.94342 * 3 2 1 5 5 C 1.46904 * 110.99853 * 58.56291 * 4 3 2 6 6 C 1.52992 * 109.47537 * 66.04455 * 5 4 3 7 7 N 1.46502 * 109.47373 * 179.97438 * 6 5 4 8 8 C 1.34769 * 119.99948 * 180.02562 * 7 6 5 9 9 O 1.21633 * 120.00181 * 4.21597 * 8 7 6 10 10 C 1.47168 * 119.99949 * 184.20686 * 8 7 6 11 11 C 1.38404 * 126.87972 * 5.43114 * 10 8 7 12 12 C 1.39678 * 105.35552 * 179.97438 * 11 10 8 13 13 N 1.30862 * 107.86344 * 359.97438 * 12 11 10 14 14 N 1.28447 * 110.92744 * 0.02562 * 13 12 11 15 15 C 1.46504 * 125.18989 * 179.73630 * 14 13 12 16 16 C 1.46894 * 110.99935 * 294.60573 * 4 3 2 17 17 C 1.50697 * 109.47383 * 288.23728 * 16 4 3 18 18 O 1.21290 * 119.99896 * 358.70111 * 17 16 4 19 19 N 1.34774 * 120.00136 * 178.70496 * 17 16 4 20 20 C 1.37101 * 120.00263 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99349 * 359.97438 * 20 19 17 22 22 C 1.38941 * 120.00377 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00215 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00142 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46844 * 89.99744 * 24 22 20 26 26 H 1.48493 * 109.47390 * 209.99848 * 24 22 20 27 27 H 1.48498 * 109.46961 * 330.00552 * 24 22 20 28 28 H 1.08998 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46857 * 299.99669 * 1 2 3 30 30 H 1.08998 * 109.46853 * 59.99441 * 1 2 3 31 31 H 1.09002 * 109.46857 * 240.00331 * 2 1 3 32 32 H 1.08994 * 109.47454 * 120.00157 * 2 1 3 33 33 H 1.08998 * 109.47270 * 60.94355 * 3 2 1 34 34 H 1.09007 * 109.46985 * 300.94210 * 3 2 1 35 35 H 1.09003 * 109.46891 * 306.04495 * 5 4 3 36 36 H 1.08997 * 109.46894 * 186.05028 * 5 4 3 37 37 H 1.09003 * 109.46998 * 60.00105 * 6 5 4 38 38 H 1.08997 * 109.47496 * 300.00203 * 6 5 4 39 39 H 0.97003 * 119.99307 * 0.02562 * 7 6 5 40 40 H 1.07993 * 127.32168 * 359.96864 * 11 10 8 41 41 H 1.07998 * 126.06772 * 179.97438 * 12 11 10 42 42 H 1.08994 * 109.47015 * 87.49008 * 15 14 13 43 43 H 1.08997 * 109.46698 * 207.49124 * 15 14 13 44 44 H 1.09000 * 109.46900 * 327.48750 * 15 14 13 45 45 H 1.09004 * 109.47380 * 48.23687 * 16 4 3 46 46 H 1.08998 * 109.47416 * 168.23309 * 16 4 3 47 47 H 0.97002 * 119.99981 * 359.97438 * 19 17 16 48 48 H 0.96995 * 119.99820 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0228 5 6 4.0170 0.7338 -1.2049 6 6 3.6334 1.5076 -2.4677 7 7 4.1407 0.8009 -3.6465 8 6 3.9211 1.3014 -4.8784 9 8 3.3693 2.3775 -5.0083 10 6 4.3492 0.5459 -6.0666 11 6 4.8902 -0.7278 -6.0906 12 6 5.1290 -1.0029 -7.4391 13 7 4.7508 0.0391 -8.1345 14 7 4.2914 0.9608 -7.3668 15 6 3.7877 2.2610 -7.8165 16 6 4.0546 0.8648 1.2126 17 6 3.8371 1.8238 2.3545 18 8 3.3033 2.8943 2.1542 19 7 4.2359 1.4920 3.5984 20 6 4.0376 2.3642 4.6375 21 1 3.5623 3.3174 4.4590 22 6 4.4482 2.0219 5.9199 23 7 4.2586 2.8582 6.9157 24 14 5.2698 0.3729 6.2287 25 1 6.7390 0.5134 6.0639 26 1 4.9677 -0.0796 7.6103 27 1 4.7560 -0.6257 5.2571 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6906 1.9515 0.8983 34 1 1.6629 1.9612 -0.8815 35 1 3.5821 -0.2649 -1.2445 36 1 5.1024 0.6551 -1.1426 37 1 4.0684 2.5062 -2.4281 38 1 2.5480 1.5862 -2.5300 39 1 4.6346 -0.0271 -3.5402 40 1 5.0861 -1.3720 -5.2463 41 1 5.5510 -1.9139 -7.8371 42 1 2.7286 2.1760 -8.0595 43 1 3.9206 2.9962 -7.0230 44 1 4.3393 2.5779 -8.7016 45 1 3.5491 -0.0767 1.4276 46 1 5.1222 0.6838 1.0884 47 1 4.6625 0.6357 3.7587 48 1 4.5449 2.6190 7.8111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317537758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:02 Heat of formation + Delta-G solvation = -6.930821 kcal Electronic energy + Delta-G solvation = -28791.200902 eV Core-core repulsion = 24689.427898 eV Total energy + Delta-G solvation = -4101.773004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.50507 -40.82747 -40.36092 -38.76705 -36.15678 -35.83344 -34.23498 -33.81200 -33.62457 -32.32591 -30.45127 -28.59436 -28.01610 -26.83224 -25.53081 -24.06806 -23.56390 -22.42269 -21.62429 -21.18012 -20.82654 -19.95610 -19.02501 -17.74979 -17.44806 -17.38525 -17.02702 -16.86604 -16.70765 -16.44985 -15.97460 -15.52798 -15.36138 -15.13247 -14.88624 -14.80260 -14.66923 -14.44913 -14.35408 -14.25233 -13.93883 -13.73827 -13.29166 -13.19302 -13.09373 -12.72799 -12.65658 -12.45374 -12.38670 -12.34617 -12.08607 -11.95651 -11.84561 -11.51533 -11.31185 -11.26965 -10.43345 -10.35883 -10.19754 -10.08331 -9.98715 -9.09295 -8.37885 -5.98417 0.20190 1.31553 1.35351 1.38263 1.46685 1.64941 2.02842 2.05188 2.12950 2.25925 2.75907 3.18120 3.30314 3.56253 3.63214 3.83618 3.98450 4.01885 4.15099 4.15376 4.22783 4.27359 4.37243 4.37820 4.43647 4.48848 4.53269 4.59666 4.65829 4.69383 4.83765 4.85554 4.91189 4.99852 5.03211 5.20592 5.21363 5.29466 5.43006 5.55543 5.56815 5.71240 5.92573 6.04238 6.19920 6.36619 6.64278 6.93549 7.00070 7.08568 7.45292 8.04313 8.80025 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.002002 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.348404 B =13984.071342 C =14262.630524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.054 3.946 4 N -0.535 5.535 5 C 0.047 3.953 6 C 0.132 3.868 7 N -0.692 5.692 8 C 0.589 3.411 9 O -0.576 6.576 10 C -0.062 4.062 11 C -0.172 4.172 12 C -0.007 4.007 13 N -0.305 5.305 14 N -0.272 5.272 15 C 0.082 3.918 16 C 0.054 3.946 17 C 0.451 3.549 18 O -0.607 6.607 19 N -0.594 5.594 20 C -0.324 4.324 21 H 0.052 0.948 22 C -0.020 4.020 23 N -0.938 5.938 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.278 1.278 27 H -0.228 1.228 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.421 0.579 40 H 0.198 0.802 41 H 0.218 0.782 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.125 0.875 47 H 0.389 0.611 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 -17.421 -27.018 32.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C -0.074 4.074 4 N -0.258 5.258 5 C -0.081 4.081 6 C 0.008 3.992 7 N -0.345 5.345 8 C 0.375 3.625 9 O -0.456 6.456 10 C -0.190 4.190 11 C -0.201 4.201 12 C -0.182 4.182 13 N -0.138 5.138 14 N -0.060 5.060 15 C -0.058 4.058 16 C -0.077 4.077 17 C 0.239 3.761 18 O -0.491 6.491 19 N -0.237 5.237 20 C -0.453 4.453 21 H 0.070 0.930 22 C -0.218 4.218 23 N -0.579 5.579 24 Si 0.786 3.214 25 H -0.181 1.181 26 H -0.203 1.203 27 H -0.151 1.151 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.259 0.741 40 H 0.215 0.785 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.127 0.873 45 H 0.104 0.896 46 H 0.143 0.857 47 H 0.225 0.775 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.919 -14.812 -28.184 31.897 hybrid contribution 0.101 -1.234 1.791 2.177 sum 2.020 -16.046 -26.393 30.953 Atomic orbital electron populations 1.21655 0.95133 1.02222 1.01448 1.22144 0.97189 0.97492 1.02681 1.22240 0.86619 0.96412 1.02125 1.61479 1.08160 1.55035 1.01155 1.22315 1.02125 0.96107 0.87526 1.21167 0.99076 0.95948 0.83057 1.45324 1.56940 1.28257 1.03975 1.17082 0.78417 0.84078 0.82907 1.90803 1.44982 1.22933 1.86900 1.21501 1.12574 0.98276 0.86652 1.22742 1.03319 0.94249 0.99815 1.24241 1.03817 0.98684 0.91447 1.73224 1.16068 0.99736 1.24793 1.45850 1.43025 1.14201 1.02905 1.22425 1.01182 0.78942 1.03266 1.21865 1.03241 0.94790 0.87839 1.21009 0.81960 0.89024 0.84092 1.90548 1.47205 1.27137 1.84216 1.42030 1.56333 1.18222 1.07092 1.18965 1.38807 0.99972 0.87594 0.92966 1.26148 0.98085 1.03407 0.94117 1.69819 1.48061 1.38744 1.01284 0.85346 0.79330 0.77442 0.79264 1.18144 1.20338 1.15126 0.91294 0.94276 0.92311 0.89445 0.92051 0.93309 0.90667 0.90712 0.88002 0.92456 0.91887 0.74087 0.78500 0.76522 0.89126 0.88298 0.87326 0.89596 0.85710 0.77528 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.98 0.71 -2.21 16 2 C -0.16 -3.16 5.29 30.60 0.16 -3.00 16 3 C 0.05 1.50 4.77 86.30 0.41 1.91 16 4 N -0.53 -14.26 4.34 -900.80 -3.90 -18.16 16 5 C 0.05 0.75 4.80 86.30 0.41 1.16 16 6 C 0.13 2.48 5.60 86.38 0.48 2.96 16 7 N -0.69 -9.82 5.54 -466.64 -2.58 -12.40 16 8 C 0.59 11.89 7.79 86.59 0.67 12.56 16 9 O -0.58 -16.00 14.71 -4.13 -0.06 -16.06 16 10 C -0.06 -1.08 6.96 40.79 0.28 -0.80 16 11 C -0.17 -1.90 10.50 22.66 0.24 -1.66 16 12 C -0.01 -0.08 12.03 85.19 1.02 0.94 16 13 N -0.31 -5.63 11.90 -57.14 -0.68 -6.31 16 14 N -0.27 -5.15 3.75 -356.02 -1.33 -6.49 16 15 C 0.08 1.25 10.84 127.77 1.39 2.63 16 16 C 0.05 1.48 5.34 85.56 0.46 1.93 16 17 C 0.45 19.72 7.45 87.66 0.65 20.38 16 18 O -0.61 -33.31 14.47 -3.06 -0.04 -33.35 16 19 N -0.59 -27.29 5.09 -307.00 -1.56 -28.86 16 20 C -0.32 -18.85 10.16 84.04 0.85 -17.99 16 21 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 22 C -0.02 -1.08 5.50 84.92 0.47 -0.61 16 23 N -0.94 -56.67 13.96 21.66 0.30 -56.37 16 24 Si 0.97 38.07 27.74 68.60 1.90 39.97 16 25 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 26 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 27 H -0.23 -7.37 6.52 99.48 0.65 -6.73 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.31 6.20 -2.39 -0.01 1.29 16 32 H 0.06 1.29 6.36 -2.39 -0.02 1.27 16 33 H 0.05 1.84 6.39 -2.39 -0.02 1.82 16 34 H 0.08 2.02 6.54 -2.38 -0.02 2.00 16 35 H 0.07 0.81 5.94 -2.39 -0.01 0.80 16 36 H 0.10 1.26 7.86 -2.39 -0.02 1.24 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.35 6.58 -2.39 -0.02 1.33 16 39 H 0.42 2.76 7.54 -92.71 -0.70 2.06 16 40 H 0.20 0.51 7.62 -2.91 -0.02 0.49 16 41 H 0.22 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.10 1.77 6.29 -2.39 -0.02 1.75 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 45 H 0.09 1.91 6.02 -2.38 -0.01 1.90 16 46 H 0.13 2.62 7.81 -2.39 -0.02 2.61 16 47 H 0.39 14.54 5.76 -92.71 -0.53 14.00 16 48 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -86.98 388.67 -0.03 -87.01 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.28 Total: 32.82 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 8.22 Total: 18.21 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -9.76 Total: -128.59 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -0.11 Total: -49.42 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.90 Total: 39.97 kcal Total: -86.98 -0.03 -87.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317537758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.080 kcal (2) G-P(sol) polarization free energy of solvation -86.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds