Wall clock time and date at job start Tue Mar 31 2020 20:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99973 * 2 1 4 4 C 1.46899 * 110.99764 * 123.95393 * 2 1 3 5 5 C 1.52998 * 109.46990 * 86.75562 * 4 2 1 6 6 C 1.52999 * 109.47353 * 297.88726 * 5 4 2 7 7 C 1.53006 * 109.47042 * 177.88478 * 5 4 2 8 8 C 1.53005 * 109.47244 * 57.88679 * 5 4 2 9 9 N 1.46493 * 109.47152 * 179.97438 * 8 5 4 10 10 C 1.34782 * 119.99845 * 180.02562 * 9 8 5 11 11 O 1.21358 * 120.00194 * 359.97438 * 10 9 8 12 12 C 1.49310 * 119.99856 * 179.97438 * 10 9 8 13 13 O 1.21407 * 120.00386 * 359.97438 * 12 10 9 14 14 N 1.34772 * 119.99984 * 179.97438 * 12 10 9 15 15 C 1.40296 * 120.00016 * 180.02562 * 14 12 10 16 16 C 1.40719 * 126.09962 * 359.95754 * 15 14 12 17 17 N 1.30882 * 108.37597 * 179.79281 * 16 15 14 18 18 N 1.40064 * 108.43162 * 0.38171 * 17 16 15 19 19 C 1.37300 * 126.05341 * 179.87805 * 18 17 16 20 20 H 1.08000 * 119.99912 * 174.48480 * 19 18 17 21 21 C 1.39007 * 119.99904 * 354.76205 * 19 18 17 22 22 N 1.31283 * 119.99768 * 4.90987 * 21 19 18 23 23 Si 1.86799 * 120.00040 * 184.91007 * 21 19 18 24 24 H 1.48503 * 109.46878 * 94.99567 * 23 21 19 25 25 H 1.48503 * 109.47151 * 214.99668 * 23 21 19 26 26 H 1.48497 * 109.47221 * 334.99544 * 23 21 19 27 27 C 1.35789 * 126.09935 * 179.97438 * 15 14 12 28 28 H 1.08992 * 109.47190 * 302.41709 * 1 2 3 29 29 H 1.09005 * 109.46853 * 62.41543 * 1 2 3 30 30 H 1.09000 * 109.47303 * 182.41155 * 1 2 3 31 31 H 1.08999 * 109.46875 * 183.95090 * 3 2 1 32 32 H 1.08999 * 109.46821 * 303.95385 * 3 2 1 33 33 H 1.09002 * 109.46848 * 63.95068 * 3 2 1 34 34 H 1.09001 * 109.47032 * 326.75712 * 4 2 1 35 35 H 1.09002 * 109.46955 * 206.75479 * 4 2 1 36 36 H 1.09002 * 109.47198 * 190.39798 * 6 5 4 37 37 H 1.09002 * 109.46864 * 310.39059 * 6 5 4 38 38 H 1.08989 * 109.47277 * 70.39317 * 6 5 4 39 39 H 1.09003 * 109.47116 * 294.90882 * 7 5 4 40 40 H 1.08998 * 109.46728 * 54.91104 * 7 5 4 41 41 H 1.09002 * 109.46992 * 174.91277 * 7 5 4 42 42 H 1.09001 * 109.46808 * 59.99985 * 8 5 4 43 43 H 1.08995 * 109.46970 * 299.99965 * 8 5 4 44 44 H 0.97004 * 120.00082 * 359.97438 * 9 8 5 45 45 H 0.97004 * 119.99946 * 359.97438 * 14 12 10 46 46 H 1.07993 * 125.81545 * 359.97438 * 16 15 14 47 47 H 0.97004 * 119.99958 * 180.02562 * 22 21 19 48 48 H 1.08005 * 126.25296 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 2.1019 -2.2428 0.7524 6 6 0.7092 -2.7872 0.4284 7 6 2.6995 -3.0323 1.9189 8 6 3.0037 -2.3860 -0.4753 9 7 3.1062 -3.8001 -0.8438 10 6 3.8546 -4.1681 -1.9026 11 8 4.4432 -3.3279 -2.5510 12 6 3.9595 -5.6095 -2.2778 13 8 3.3711 -6.4501 -1.6289 14 7 4.7074 -5.9774 -3.3368 15 6 4.8055 -7.3318 -3.6897 16 6 4.1815 -8.4074 -3.0311 17 7 4.5042 -9.5140 -3.6512 18 7 5.3501 -9.1921 -4.7201 19 6 5.9050 -10.0809 -5.6074 20 1 6.4733 -9.7180 -6.4510 21 6 5.7303 -11.4476 -5.4231 22 7 4.9561 -11.8861 -4.4578 23 14 6.5974 -12.6602 -6.5488 24 1 7.8697 -13.0970 -5.9197 25 1 5.7242 -13.8406 -6.7712 26 1 6.8875 -12.0069 -7.8505 27 6 5.5199 -7.8384 -4.7274 28 1 -0.3633 0.5509 0.8674 29 1 -0.3633 0.4759 -0.9109 30 1 -0.3634 -1.0267 0.0432 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7043 1.8723 0.9233 34 1 1.3232 -0.6602 1.9891 35 1 2.9823 -0.3880 1.4046 36 1 0.7559 -3.8722 0.3350 37 1 0.0197 -2.5209 1.2295 38 1 0.3600 -2.3564 -0.5098 39 1 3.7252 -2.7059 2.0910 40 1 2.1070 -2.8578 2.8170 41 1 2.6919 -4.0957 1.6796 42 1 3.9959 -1.9982 -0.2445 43 1 2.5781 -1.8236 -1.3063 44 1 2.6360 -4.4717 -0.3253 45 1 5.1773 -5.3058 -3.8556 46 1 3.5426 -8.3325 -2.1637 47 1 4.8345 -12.8398 -4.3290 48 1 6.1149 -7.2732 -5.4295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319556512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:46 Heat of formation + Delta-G solvation = 25.130072 kcal Electronic energy + Delta-G solvation = -28931.058163 eV Core-core repulsion = 24830.675423 eV Total energy + Delta-G solvation = -4100.382740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.52265 -39.68696 -38.99068 -37.77205 -36.05601 -34.43080 -33.32716 -32.90937 -30.30127 -28.77894 -28.12885 -27.44874 -27.08538 -26.76151 -25.08734 -23.39927 -22.32170 -20.99886 -20.24919 -19.56647 -19.32258 -18.02102 -17.41037 -16.48551 -15.92397 -15.87416 -15.56829 -15.49224 -15.35371 -15.00681 -14.76037 -14.41358 -14.14633 -13.81525 -13.61048 -13.46201 -13.39006 -12.99375 -12.96142 -12.82307 -12.67832 -12.47749 -12.12227 -11.99782 -11.72750 -11.69241 -11.53666 -11.29575 -11.17786 -11.14314 -10.94306 -10.81155 -10.73476 -10.53656 -10.24954 -9.21348 -9.14664 -9.06432 -8.84976 -8.68810 -8.10432 -6.74918 -6.59101 -4.25882 1.74797 2.71462 2.94806 3.05159 3.10126 3.38558 3.55259 3.75965 3.78639 4.05483 4.34455 4.40263 4.48087 4.59645 4.66653 4.82350 4.90530 4.99114 5.03274 5.04026 5.08156 5.17742 5.22669 5.32713 5.39021 5.48450 5.53568 5.54135 5.58286 5.68914 5.73721 5.85153 6.00538 6.07734 6.22712 6.32662 6.39275 6.64269 6.64489 6.79525 6.91448 6.96556 7.18528 7.32170 7.80493 7.93100 8.16823 8.21326 8.52900 8.72673 9.33678 9.62180 10.36956 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033841 B = 0.001881 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.204025 B =14878.832481 C =15256.780047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.069 4.069 6 C -0.149 4.149 7 C -0.148 4.148 8 C 0.137 3.863 9 N -0.703 5.703 10 C 0.513 3.487 11 O -0.529 6.529 12 C 0.484 3.516 13 O -0.525 6.525 14 N -0.584 5.584 15 C -0.068 4.068 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.410 0.590 45 H 0.409 0.591 46 H 0.178 0.822 47 H 0.275 0.725 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 21.328 10.485 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.267 5.267 3 C -0.124 4.124 4 C -0.063 4.063 5 C -0.070 4.070 6 C -0.206 4.206 7 C -0.205 4.205 8 C 0.014 3.986 9 N -0.357 5.357 10 C 0.294 3.706 11 O -0.405 6.405 12 C 0.264 3.736 13 O -0.403 6.403 14 N -0.227 5.227 15 C -0.174 4.174 16 C -0.203 4.203 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.247 0.753 45 H 0.244 0.756 46 H 0.194 0.806 47 H 0.086 0.914 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.399 19.641 10.115 23.001 hybrid contribution 0.244 0.953 0.261 1.017 sum -6.154 20.594 10.376 23.867 Atomic orbital electron populations 1.22868 0.87323 1.03513 1.00581 1.61880 1.08114 1.13733 1.42997 1.22422 1.00865 0.88720 1.00359 1.22171 1.00149 0.92610 0.91338 1.20786 0.96066 0.95057 0.95121 1.22141 0.95294 1.01179 1.02028 1.21928 1.00923 1.00421 0.97264 1.21418 0.99341 0.80660 0.97211 1.45809 1.49550 1.09863 1.30493 1.20227 0.79744 0.89433 0.81167 1.90727 1.45043 1.52922 1.51854 1.19728 0.82481 0.88551 0.82795 1.90644 1.45727 1.51717 1.52170 1.42156 1.45459 1.07207 1.27886 1.17264 1.13799 0.82460 1.03886 1.24140 1.04555 0.88814 1.02750 1.78253 1.10747 1.19869 1.00319 1.44558 1.25929 1.02634 1.17502 1.19927 1.32636 0.86547 1.06349 0.86445 1.25666 0.96057 0.98191 0.97200 1.70216 1.27775 1.15540 1.25888 0.85791 0.79118 0.79385 0.79756 1.19601 1.20073 1.18722 1.21314 1.11113 0.86134 1.04240 0.95901 0.91503 0.89498 0.91197 0.91334 0.95840 0.93500 0.90799 0.92302 0.92551 0.90965 0.92199 0.92292 0.91794 0.91668 0.89489 0.75253 0.75596 0.80571 0.91399 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 8.97 60.07 0.54 0.57 16 2 N -0.54 -3.93 3.95 -251.26 -0.99 -4.92 16 3 C 0.02 0.15 9.43 60.06 0.57 0.72 16 4 C 0.07 0.44 4.23 -3.83 -0.02 0.42 16 5 C -0.07 -0.52 0.60 -154.50 -0.09 -0.61 16 6 C -0.15 -1.10 6.54 37.16 0.24 -0.85 16 7 C -0.15 -1.04 8.21 37.16 0.31 -0.73 16 8 C 0.14 1.39 4.36 -4.04 -0.02 1.37 16 9 N -0.70 -8.61 5.03 -60.78 -0.31 -8.92 16 10 C 0.51 8.03 7.88 -11.65 -0.09 7.94 16 11 O -0.53 -9.09 16.47 5.49 0.09 -9.00 16 12 C 0.48 8.93 7.85 -11.65 -0.09 8.84 16 13 O -0.52 -10.72 13.62 5.45 0.07 -10.64 16 14 N -0.58 -11.26 5.45 -10.45 -0.06 -11.32 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.17 16 16 C -0.03 -0.70 10.84 -17.02 -0.18 -0.88 16 17 N -0.26 -7.54 10.41 30.81 0.32 -7.22 16 18 N -0.14 -3.82 3.73 -11.40 -0.04 -3.86 16 19 C -0.32 -8.49 10.24 -14.82 -0.15 -8.64 16 20 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.28 11.83 55.50 0.66 -20.62 16 23 Si 0.94 18.81 29.55 -169.99 -5.02 13.79 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 27 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 28 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.54 4.08 -51.93 -0.21 0.32 16 31 H 0.07 0.42 8.06 -51.93 -0.42 0.01 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.05 0.29 7.83 -51.93 -0.41 -0.12 16 35 H 0.07 0.47 7.72 -51.93 -0.40 0.07 16 36 H 0.06 0.47 7.13 -51.93 -0.37 0.10 16 37 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 38 H 0.07 0.58 6.23 -51.94 -0.32 0.25 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.00 7.55 -51.93 -0.39 0.61 16 44 H 0.41 4.73 5.78 -40.82 -0.24 4.50 16 45 H 0.41 6.85 8.29 -40.82 -0.34 6.51 16 46 H 0.18 4.46 5.92 -52.49 -0.31 4.15 16 47 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.15 2.96 8.06 -52.48 -0.42 2.54 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -32.56 388.84 -6.37 -38.93 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.10 Total: 12.86 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 0.14 Total: 5.05 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.42 Total: -56.85 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.16 Total: -19.64 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.56 -6.37 -38.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319556512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.063 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds