Wall clock time and date at job start Tue Mar 31 2020 20:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99973 * 2 1 4 4 C 1.46899 * 110.99764 * 123.95393 * 2 1 3 5 5 C 1.52998 * 109.46990 * 86.75562 * 4 2 1 6 6 C 1.52999 * 109.47353 * 297.88726 * 5 4 2 7 7 C 1.53006 * 109.47042 * 177.88478 * 5 4 2 8 8 C 1.53005 * 109.47244 * 57.88679 * 5 4 2 9 9 N 1.46493 * 109.47152 * 179.97438 * 8 5 4 10 10 C 1.34782 * 119.99845 * 180.02562 * 9 8 5 11 11 O 1.21358 * 120.00194 * 359.97438 * 10 9 8 12 12 C 1.49310 * 119.99856 * 179.97438 * 10 9 8 13 13 O 1.21407 * 120.00386 * 359.97438 * 12 10 9 14 14 N 1.34772 * 119.99984 * 179.97438 * 12 10 9 15 15 C 1.40296 * 120.00016 * 180.02562 * 14 12 10 16 16 C 1.40719 * 126.09962 * 359.95754 * 15 14 12 17 17 N 1.30882 * 108.37597 * 179.79281 * 16 15 14 18 18 N 1.40064 * 108.43162 * 0.38171 * 17 16 15 19 19 C 1.37300 * 126.05341 * 179.87805 * 18 17 16 20 20 H 1.08000 * 119.99912 * 174.48480 * 19 18 17 21 21 C 1.39007 * 119.99904 * 354.76205 * 19 18 17 22 22 N 1.31283 * 119.99768 * 4.90987 * 21 19 18 23 23 Si 1.86799 * 120.00040 * 184.91007 * 21 19 18 24 24 H 1.48503 * 109.46878 * 94.99567 * 23 21 19 25 25 H 1.48503 * 109.47151 * 214.99668 * 23 21 19 26 26 H 1.48497 * 109.47221 * 334.99544 * 23 21 19 27 27 C 1.35789 * 126.09935 * 179.97438 * 15 14 12 28 28 H 1.08992 * 109.47190 * 302.41709 * 1 2 3 29 29 H 1.09005 * 109.46853 * 62.41543 * 1 2 3 30 30 H 1.09000 * 109.47303 * 182.41155 * 1 2 3 31 31 H 1.08999 * 109.46875 * 183.95090 * 3 2 1 32 32 H 1.08999 * 109.46821 * 303.95385 * 3 2 1 33 33 H 1.09002 * 109.46848 * 63.95068 * 3 2 1 34 34 H 1.09001 * 109.47032 * 326.75712 * 4 2 1 35 35 H 1.09002 * 109.46955 * 206.75479 * 4 2 1 36 36 H 1.09002 * 109.47198 * 190.39798 * 6 5 4 37 37 H 1.09002 * 109.46864 * 310.39059 * 6 5 4 38 38 H 1.08989 * 109.47277 * 70.39317 * 6 5 4 39 39 H 1.09003 * 109.47116 * 294.90882 * 7 5 4 40 40 H 1.08998 * 109.46728 * 54.91104 * 7 5 4 41 41 H 1.09002 * 109.46992 * 174.91277 * 7 5 4 42 42 H 1.09001 * 109.46808 * 59.99985 * 8 5 4 43 43 H 1.08995 * 109.46970 * 299.99965 * 8 5 4 44 44 H 0.97004 * 120.00082 * 359.97438 * 9 8 5 45 45 H 0.97004 * 119.99946 * 359.97438 * 14 12 10 46 46 H 1.07993 * 125.81545 * 359.97438 * 16 15 14 47 47 H 0.97004 * 119.99958 * 180.02562 * 22 21 19 48 48 H 1.08005 * 126.25296 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 2.1019 -2.2428 0.7524 6 6 0.7092 -2.7872 0.4284 7 6 2.6995 -3.0323 1.9189 8 6 3.0037 -2.3860 -0.4753 9 7 3.1062 -3.8001 -0.8438 10 6 3.8546 -4.1681 -1.9026 11 8 4.4432 -3.3279 -2.5510 12 6 3.9595 -5.6095 -2.2778 13 8 3.3711 -6.4501 -1.6289 14 7 4.7074 -5.9774 -3.3368 15 6 4.8055 -7.3318 -3.6897 16 6 4.1815 -8.4074 -3.0311 17 7 4.5042 -9.5140 -3.6512 18 7 5.3501 -9.1921 -4.7201 19 6 5.9050 -10.0809 -5.6074 20 1 6.4733 -9.7180 -6.4510 21 6 5.7303 -11.4476 -5.4231 22 7 4.9561 -11.8861 -4.4578 23 14 6.5974 -12.6602 -6.5488 24 1 7.8697 -13.0970 -5.9197 25 1 5.7242 -13.8406 -6.7712 26 1 6.8875 -12.0069 -7.8505 27 6 5.5199 -7.8384 -4.7274 28 1 -0.3633 0.5509 0.8674 29 1 -0.3633 0.4759 -0.9109 30 1 -0.3634 -1.0267 0.0432 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7043 1.8723 0.9233 34 1 1.3232 -0.6602 1.9891 35 1 2.9823 -0.3880 1.4046 36 1 0.7559 -3.8722 0.3350 37 1 0.0197 -2.5209 1.2295 38 1 0.3600 -2.3564 -0.5098 39 1 3.7252 -2.7059 2.0910 40 1 2.1070 -2.8578 2.8170 41 1 2.6919 -4.0957 1.6796 42 1 3.9959 -1.9982 -0.2445 43 1 2.5781 -1.8236 -1.3063 44 1 2.6360 -4.4717 -0.3253 45 1 5.1773 -5.3058 -3.8556 46 1 3.5426 -8.3325 -2.1637 47 1 4.8345 -12.8398 -4.3290 48 1 6.1149 -7.2732 -5.4295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319556512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:45 Heat of formation + Delta-G solvation = 1.369207 kcal Electronic energy + Delta-G solvation = -28932.088512 eV Core-core repulsion = 24830.675423 eV Total energy + Delta-G solvation = -4101.413088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.02276 -41.22908 -40.00884 -39.13462 -36.88889 -36.04161 -35.03877 -34.04163 -32.28743 -29.93094 -29.30785 -28.19780 -27.91659 -27.43465 -26.84331 -24.78946 -22.95809 -22.81664 -21.67463 -21.22155 -20.37472 -19.39655 -19.03819 -17.68170 -17.44700 -17.02804 -16.84330 -16.72992 -16.33681 -15.96228 -15.73216 -15.68467 -15.56302 -15.10633 -14.97705 -14.83184 -14.45710 -14.28994 -14.07553 -13.51565 -13.37501 -13.35383 -13.19724 -13.06548 -12.99232 -12.86297 -12.74093 -12.61423 -12.46229 -12.21220 -12.06271 -11.95673 -11.78588 -11.56544 -11.31268 -11.06825 -10.86184 -10.55174 -10.22446 -10.13078 -9.20623 -8.61189 -8.48713 -6.26010 0.32445 1.30100 1.35072 1.43690 1.59620 1.73506 2.06894 2.12848 2.55484 2.62104 2.97362 3.05392 3.07503 3.56665 3.69259 3.88719 3.96013 4.33661 4.37156 4.40661 4.45164 4.53622 4.56654 4.63984 4.71634 4.75916 4.82866 4.87320 4.93253 4.97181 4.99371 5.00379 5.03897 5.08299 5.10447 5.18579 5.22795 5.27604 5.31814 5.37341 5.47741 5.91545 6.04320 6.14935 6.15847 6.26803 6.51123 6.68373 6.84707 7.09510 7.42202 7.63577 8.50777 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033841 B = 0.001881 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.204025 B =14878.832481 C =15256.780047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.560 5.560 3 C 0.025 3.975 4 C 0.069 3.931 5 C -0.061 4.061 6 C -0.148 4.148 7 C -0.147 4.147 8 C 0.138 3.862 9 N -0.684 5.684 10 C 0.522 3.478 11 O -0.543 6.543 12 C 0.486 3.514 13 O -0.544 6.544 14 N -0.583 5.583 15 C -0.056 4.056 16 C -0.048 4.048 17 N -0.308 5.308 18 N -0.164 5.164 19 C -0.353 4.353 20 H 0.141 0.859 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.244 1.244 27 C -0.074 4.074 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.415 0.585 45 H 0.423 0.577 46 H 0.176 0.824 47 H 0.278 0.722 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 22.916 10.346 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.283 5.283 3 C -0.123 4.123 4 C -0.059 4.059 5 C -0.062 4.062 6 C -0.205 4.205 7 C -0.204 4.204 8 C 0.016 3.984 9 N -0.338 5.338 10 C 0.302 3.698 11 O -0.421 6.421 12 C 0.268 3.732 13 O -0.422 6.422 14 N -0.228 5.228 15 C -0.163 4.163 16 C -0.223 4.223 17 N -0.140 5.140 18 N 0.068 4.932 19 C -0.485 4.485 20 H 0.159 0.841 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.839 3.161 24 H -0.191 1.191 25 H -0.200 1.200 26 H -0.166 1.166 27 C -0.225 4.225 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.253 0.747 45 H 0.261 0.739 46 H 0.193 0.807 47 H 0.088 0.912 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.905 21.290 9.999 24.251 hybrid contribution 0.009 0.643 0.407 0.761 sum -5.896 21.932 10.406 24.981 Atomic orbital electron populations 1.22859 0.86916 1.03626 1.00792 1.61869 1.08649 1.14382 1.43447 1.22419 1.00790 0.88319 1.00757 1.22141 1.00709 0.91594 0.91478 1.20745 0.95434 0.96102 0.93931 1.22133 0.95510 1.00529 1.02333 1.21920 1.01291 0.99614 0.97606 1.21560 0.99959 0.78737 0.98133 1.45832 1.47820 1.11147 1.28960 1.19640 0.80528 0.87618 0.82057 1.90732 1.46097 1.52567 1.52675 1.20331 0.81190 0.89841 0.81871 1.90636 1.46147 1.52812 1.52602 1.42096 1.46222 1.05851 1.28614 1.17307 1.12246 0.83784 1.02923 1.24245 1.05365 0.89522 1.03183 1.78152 1.12374 1.21607 1.01845 1.44840 1.26552 1.04023 1.17753 1.20658 1.33294 0.87308 1.07197 0.84132 1.26890 0.96237 1.00017 0.98587 1.70381 1.29977 1.16082 1.28405 0.84566 0.77444 0.76171 0.77969 1.19136 1.20048 1.16648 1.22005 1.10622 0.85341 1.04549 0.95280 0.91686 0.89449 0.91270 0.91308 0.95124 0.92386 0.90351 0.93126 0.91005 0.91621 0.92096 0.90759 0.92774 0.91690 0.90429 0.74656 0.73949 0.80726 0.91238 0.79520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 8.97 127.69 1.15 1.21 16 2 N -0.56 -7.14 3.95 -948.85 -3.75 -10.89 16 3 C 0.03 0.27 9.43 127.69 1.20 1.48 16 4 C 0.07 0.76 4.23 86.30 0.37 1.13 16 5 C -0.06 -0.80 0.60 -52.18 -0.03 -0.83 16 6 C -0.15 -1.93 6.54 71.98 0.47 -1.46 16 7 C -0.15 -1.78 8.21 71.98 0.59 -1.19 16 8 C 0.14 2.62 4.36 86.38 0.38 3.00 16 9 N -0.68 -16.01 5.03 -464.56 -2.34 -18.34 16 10 C 0.52 15.77 7.88 87.23 0.69 16.46 16 11 O -0.54 -17.91 16.47 -3.27 -0.05 -17.96 16 12 C 0.49 17.67 7.85 87.23 0.69 18.35 16 13 O -0.54 -22.25 13.62 -3.42 -0.05 -22.29 16 14 N -0.58 -21.98 5.45 -305.33 -1.66 -23.65 16 15 C -0.06 -2.63 6.90 37.82 0.26 -2.37 16 16 C -0.05 -2.56 10.84 85.44 0.93 -1.63 16 17 N -0.31 -18.38 10.41 -56.44 -0.59 -18.97 16 18 N -0.16 -9.07 3.73 -189.97 -0.71 -9.78 16 19 C -0.35 -18.64 10.24 84.02 0.86 -17.78 16 20 H 0.14 6.44 7.84 -2.91 -0.02 6.42 16 21 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 22 N -0.82 -46.87 11.83 21.66 0.26 -46.61 16 23 Si 1.02 38.31 29.55 68.60 2.03 40.34 16 24 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 25 H -0.28 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.24 -8.28 7.11 99.48 0.71 -7.57 16 27 C -0.07 -3.48 11.50 83.41 0.96 -2.53 16 28 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.09 0.94 4.08 -2.39 -0.01 0.93 16 31 H 0.07 0.74 8.06 -2.39 -0.02 0.72 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.06 0.54 7.83 -2.39 -0.02 0.52 16 35 H 0.08 0.81 7.72 -2.39 -0.02 0.79 16 36 H 0.05 0.74 7.13 -2.39 -0.02 0.73 16 37 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 38 H 0.06 0.96 6.23 -2.39 -0.01 0.95 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 0.77 6.98 -2.39 -0.02 0.75 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.69 7.55 -2.39 -0.02 1.67 16 44 H 0.42 9.17 5.78 -92.71 -0.54 8.63 16 45 H 0.42 13.52 8.29 -92.71 -0.77 12.75 16 46 H 0.18 9.18 5.92 -2.91 -0.02 9.17 16 47 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 48 H 0.19 7.03 8.06 -2.91 -0.02 7.00 16 Total: -1.00 -71.91 388.84 1.80 -70.10 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: -0.30 Total: 44.01 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 8.97 Total: 14.03 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -8.79 Total: -128.23 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.10 Total: -40.25 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -71.91 1.80 -70.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319556512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.473 kcal (2) G-P(sol) polarization free energy of solvation -71.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds