Wall clock time and date at job start Tue Mar 31 2020 20:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47011 * 2 1 4 4 C 1.52999 * 109.46983 * 120.00311 * 2 1 3 5 5 H 1.08997 * 109.47190 * 303.35916 * 4 2 1 6 6 C 1.52988 * 109.47485 * 63.36514 * 4 2 1 7 7 N 1.46502 * 109.47570 * 174.99684 * 6 4 2 8 8 C 1.34778 * 120.00406 * 179.97438 * 7 6 4 9 9 O 1.21629 * 119.99781 * 5.23521 * 8 7 6 10 10 C 1.47161 * 119.99834 * 185.23393 * 8 7 6 11 11 C 1.38408 * 126.88524 * 6.12225 * 10 8 7 12 12 C 1.39674 * 105.35590 * 180.13994 * 11 10 8 13 13 N 1.30860 * 107.86377 * 359.58693 * 12 11 10 14 14 N 1.28449 * 110.92758 * 0.26475 * 13 12 11 15 15 C 1.46499 * 125.18854 * 180.02562 * 14 13 12 16 16 N 1.46903 * 109.46749 * 183.36640 * 4 2 1 17 17 C 1.46904 * 110.99900 * 298.14023 * 16 4 2 18 18 C 1.50694 * 109.46910 * 183.88819 * 17 16 4 19 19 O 1.21298 * 120.00495 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99963 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99926 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99845 * 359.97438 * 21 20 18 23 23 C 1.38942 * 119.99719 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00420 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00040 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46925 * 90.00438 * 25 23 21 27 27 H 1.48499 * 109.47157 * 209.99810 * 25 23 21 28 28 H 1.48495 * 109.47045 * 330.00614 * 25 23 21 29 29 H 1.08999 * 109.47193 * 299.99869 * 1 2 3 30 30 H 1.09003 * 109.47206 * 60.00351 * 1 2 3 31 31 H 1.09005 * 109.47308 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47193 * 240.00131 * 2 1 3 33 33 H 1.09003 * 109.47159 * 185.76740 * 3 2 1 34 34 H 1.09006 * 109.47368 * 305.77251 * 3 2 1 35 35 H 1.09006 * 109.47193 * 65.76897 * 3 2 1 36 36 H 1.09006 * 109.47432 * 54.99877 * 6 4 2 37 37 H 1.09003 * 109.47582 * 295.00114 * 6 4 2 38 38 H 0.97003 * 119.99372 * 0.02562 * 7 6 4 39 39 H 1.08002 * 127.32222 * 359.97438 * 11 10 8 40 40 H 1.08000 * 126.06817 * 179.85201 * 12 11 10 41 41 H 1.09001 * 109.47336 * 86.77673 * 15 14 13 42 42 H 1.09004 * 109.46460 * 206.77323 * 15 14 13 43 43 H 1.08996 * 109.47144 * 326.77072 * 15 14 13 44 44 H 1.00897 * 111.00400 * 62.09357 * 16 4 2 45 45 H 1.08996 * 109.46611 * 303.88773 * 17 16 4 46 46 H 1.08997 * 109.46812 * 63.89001 * 17 16 4 47 47 H 0.96990 * 119.99940 * 359.97438 * 20 18 17 48 48 H 0.96994 * 120.00725 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6283 -0.2435 2.1382 6 6 1.6003 -2.1861 1.2076 7 7 2.1877 -2.9048 2.3410 8 6 1.9363 -4.2181 2.5098 9 8 1.3010 -4.8283 1.6710 10 6 2.4304 -4.9137 3.7087 11 6 3.0597 -4.3419 4.8008 12 6 3.3367 -5.4031 5.6657 13 7 2.8889 -6.5004 5.1109 14 7 2.3546 -6.2524 3.9695 15 6 1.7548 -7.2527 3.0829 16 7 3.5067 -0.6513 1.2905 17 6 4.0989 -1.3255 0.1274 18 6 5.6007 -1.3166 0.2525 19 8 6.1260 -0.7999 1.2160 20 7 6.3601 -1.8837 -0.7058 21 6 7.7263 -1.8761 -0.5917 22 1 8.1940 -1.4153 0.2658 23 6 8.5091 -2.4612 -1.5793 24 7 7.9400 -3.0223 -2.6225 25 14 10.3707 -2.4502 -1.4243 26 1 10.8142 -3.6682 -0.6996 27 1 10.9800 -2.4307 -2.7784 28 1 10.7976 -1.2434 -0.6718 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1251 1.4442 -0.1033 34 1 1.5947 1.9853 -0.8338 35 1 1.7634 1.9256 0.9372 36 1 1.9371 -2.6402 0.2756 37 1 0.5133 -2.2411 1.2665 38 1 2.7571 -2.4351 2.9705 39 1 3.2902 -3.2975 4.9510 40 1 3.8288 -5.3303 6.6243 41 1 0.7104 -7.4015 3.3570 42 1 1.8138 -6.9056 2.0512 43 1 2.2940 -8.1948 3.1807 44 1 3.8215 0.3053 1.3529 45 1 3.7439 -2.3551 0.0847 46 1 3.8071 -0.8024 -0.7832 47 1 5.9400 -2.2978 -1.4757 48 1 8.4864 -3.4305 -3.3122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319899696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:12 Heat of formation + Delta-G solvation = 3.687349 kcal Electronic energy + Delta-G solvation = -29811.603546 eV Core-core repulsion = 25710.290980 eV Total energy + Delta-G solvation = -4101.312566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.54598 -39.81132 -38.66766 -37.57544 -34.59249 -34.01122 -33.28200 -32.86323 -31.23465 -31.14221 -28.72275 -27.48616 -27.16499 -26.14642 -24.41516 -23.44025 -22.25514 -21.29487 -20.41532 -19.81977 -19.01534 -18.07702 -17.78196 -16.89968 -16.35723 -16.24733 -15.66862 -15.50805 -14.88697 -14.84835 -14.68216 -14.50999 -14.08498 -13.89843 -13.81507 -13.61338 -13.55944 -13.35788 -12.93852 -12.82848 -12.51958 -12.40856 -12.30596 -12.21595 -11.92433 -11.56387 -11.46246 -11.18608 -10.99058 -10.92988 -10.89763 -10.70523 -10.40018 -10.22238 -10.11752 -9.51010 -9.35670 -9.10792 -8.97597 -8.51743 -8.10377 -7.96443 -6.41919 -3.82882 1.21774 2.31195 2.56458 3.15782 3.17578 3.21080 3.26319 3.31754 3.89862 4.07724 4.30058 4.47433 4.51230 4.54283 4.72212 4.82815 5.02338 5.04687 5.05768 5.18483 5.20044 5.23516 5.24933 5.43366 5.44301 5.45699 5.50684 5.59204 5.66603 5.69218 5.70423 5.78385 5.85536 5.92705 5.95461 6.11510 6.19537 6.24743 6.34882 6.43053 6.63416 7.09313 7.44067 7.54111 7.54770 7.96757 8.05588 8.10940 8.60487 9.17505 9.53941 10.05018 10.75757 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007331 B = 0.003767 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.391857 B = 7431.251176 C =10068.580211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.150 4.150 4 C 0.079 3.921 5 H 0.092 0.908 6 C 0.126 3.874 7 N -0.696 5.696 8 C 0.590 3.410 9 O -0.550 6.550 10 C -0.036 4.036 11 C -0.184 4.184 12 C -0.004 4.004 13 N -0.282 5.282 14 N -0.259 5.259 15 C 0.085 3.915 16 N -0.659 5.659 17 C 0.043 3.957 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.415 0.585 39 H 0.163 0.837 40 H 0.187 0.813 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.355 0.645 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.917 0.753 8.384 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.208 4.208 4 C -0.033 4.033 5 H 0.110 0.890 6 C 0.002 3.998 7 N -0.347 5.347 8 C 0.376 3.624 9 O -0.429 6.429 10 C -0.165 4.165 11 C -0.213 4.213 12 C -0.179 4.179 13 N -0.115 5.115 14 N -0.047 5.047 15 C -0.055 4.055 16 N -0.292 5.292 17 C -0.089 4.089 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.252 0.748 39 H 0.181 0.819 40 H 0.204 0.796 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.176 0.824 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.010 -1.211 8.744 19.164 hybrid contribution 0.909 1.344 -1.104 1.962 sum -16.101 0.133 7.640 17.822 Atomic orbital electron populations 1.21858 0.94778 1.01962 1.01858 1.21816 0.96575 0.97095 0.99635 1.21848 1.01474 0.95399 1.02050 1.21964 0.89215 0.94134 0.97940 0.89041 1.21543 0.97709 0.90897 0.89606 1.45486 1.51000 1.08468 1.29766 1.16889 0.79545 0.82175 0.83836 1.90764 1.41875 1.66068 1.44177 1.21391 1.10056 0.85899 0.99138 1.22319 1.03837 1.01145 0.93955 1.23570 1.04320 0.88207 1.01839 1.73195 1.13757 1.28062 0.96451 1.45590 1.40209 1.05597 1.13305 1.22340 0.98571 0.90555 0.94009 1.60237 1.04012 1.22991 1.41952 1.21764 0.94867 1.00194 0.92086 1.19786 0.87666 0.84764 0.85118 1.90520 1.73997 1.49676 1.32520 1.41865 1.06827 1.50533 1.20765 1.19688 0.80959 1.34920 1.07307 0.87935 1.25254 1.00696 0.96668 0.95265 1.69610 1.36583 1.37835 1.10244 0.85874 0.82212 0.78888 0.77419 1.20398 1.20941 1.19405 0.92563 0.92667 0.92332 0.90455 0.92270 0.92347 0.92370 0.90965 0.90774 0.74773 0.81944 0.79632 0.89894 0.87041 0.89029 0.82432 0.89555 0.93505 0.77563 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.92 37.16 0.33 -0.81 16 2 C -0.13 -1.21 2.07 -90.62 -0.19 -1.40 16 3 C -0.15 -1.39 8.59 37.16 0.32 -1.07 16 4 C 0.08 0.80 2.30 -67.72 -0.16 0.64 16 5 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 6 C 0.13 1.41 4.19 -4.05 -0.02 1.40 16 7 N -0.70 -8.51 5.37 -61.47 -0.33 -8.84 16 8 C 0.59 8.34 7.78 -12.64 -0.10 8.25 16 9 O -0.55 -8.81 14.71 5.25 0.08 -8.74 16 10 C -0.04 -0.50 6.96 -82.06 -0.57 -1.07 16 11 C -0.18 -2.20 10.50 -38.98 -0.41 -2.61 16 12 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 13 N -0.28 -3.85 11.90 30.59 0.36 -3.49 16 14 N -0.26 -3.51 3.75 -63.88 -0.24 -3.75 16 15 C 0.09 0.91 10.86 59.85 0.65 1.56 16 16 N -0.66 -8.99 5.32 -108.00 -0.57 -9.56 16 17 C 0.04 0.71 5.37 -4.98 -0.03 0.69 16 18 C 0.44 10.06 7.83 -10.99 -0.09 9.97 16 19 O -0.58 -15.16 15.86 5.54 0.09 -15.08 16 20 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 21 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 6.63 -51.93 -0.34 0.11 16 32 H 0.08 0.81 6.71 -51.93 -0.35 0.46 16 33 H 0.06 0.64 7.00 -51.93 -0.36 0.28 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.92 6.57 -51.93 -0.34 0.58 16 37 H 0.07 0.76 6.77 -51.93 -0.35 0.40 16 38 H 0.42 4.86 7.23 -40.82 -0.30 4.57 16 39 H 0.16 1.56 7.63 -52.49 -0.40 1.16 16 40 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.29 6.26 -51.93 -0.33 0.97 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.35 5.01 6.94 -39.29 -0.27 4.74 16 45 H 0.09 1.42 6.17 -51.93 -0.32 1.10 16 46 H 0.05 0.71 6.63 -51.93 -0.34 0.36 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 LS Contribution 391.66 15.07 5.90 5.90 Total: -1.00 -33.42 391.66 -6.69 -40.11 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -6.92 Total: 18.10 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -0.70 Total: 7.36 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.11 Total: -63.73 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.81 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.42 -6.69 -40.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319899696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.798 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds