Wall clock time and date at job start Tue Mar 31 2020 20:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.53005 * 109.47255 * 119.99783 * 2 1 3 5 5 H 1.09004 * 109.47317 * 294.45349 * 4 2 1 6 6 C 1.52995 * 109.47210 * 174.44680 * 4 2 1 7 7 N 1.46500 * 109.46887 * 184.99982 * 6 4 2 8 8 C 1.34786 * 119.99976 * 179.97438 * 7 6 4 9 9 O 1.21627 * 119.99540 * 354.64662 * 8 7 6 10 10 C 1.47161 * 119.99773 * 174.64839 * 8 7 6 11 11 C 1.38396 * 126.88776 * 4.72376 * 10 8 7 12 12 C 1.39676 * 105.36167 * 179.91777 * 11 10 8 13 13 N 1.30862 * 107.85670 * 0.35203 * 12 11 10 14 14 N 1.28442 * 110.93324 * 359.77207 * 13 12 11 15 15 C 1.46498 * 125.19591 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.47067 * 54.44690 * 4 2 1 17 17 C 1.46900 * 111.00259 * 61.61584 * 16 4 2 18 18 C 1.50693 * 109.47386 * 180.85089 * 17 16 4 19 19 O 1.21287 * 120.00203 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00196 * 179.72672 * 18 17 16 21 21 C 1.37095 * 120.00527 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99804 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00295 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99884 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00133 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46828 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46907 * 119.99909 * 25 23 21 28 28 H 1.48494 * 109.47260 * 240.00269 * 25 23 21 29 29 H 1.09003 * 109.46705 * 304.33241 * 1 2 3 30 30 H 1.08997 * 109.47146 * 64.33705 * 1 2 3 31 31 H 1.09006 * 109.46989 * 184.33356 * 1 2 3 32 32 H 1.08998 * 109.47005 * 239.99391 * 2 1 3 33 33 H 1.09005 * 109.47262 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46910 * 299.99407 * 3 2 1 35 35 H 1.08994 * 109.47195 * 59.99956 * 3 2 1 36 36 H 1.09004 * 109.47283 * 304.99889 * 6 4 2 37 37 H 1.08995 * 109.46983 * 65.00166 * 6 4 2 38 38 H 0.96999 * 120.00446 * 0.02562 * 7 6 4 39 39 H 1.08003 * 127.32221 * 359.97438 * 11 10 8 40 40 H 1.07998 * 126.06985 * 180.10174 * 12 11 10 41 41 H 1.08994 * 109.47535 * 268.30695 * 15 14 13 42 42 H 1.09002 * 109.46817 * 28.30636 * 15 14 13 43 43 H 1.08998 * 109.47044 * 148.30477 * 15 14 13 44 44 H 1.00895 * 111.00392 * 185.57334 * 16 4 2 45 45 H 1.09001 * 109.47024 * 60.85207 * 17 16 4 46 46 H 1.08996 * 109.47436 * 300.85663 * 17 16 4 47 47 H 0.97003 * 119.99928 * 359.97438 * 20 18 17 48 48 H 0.97008 * 119.99954 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.7601 -0.1532 2.1365 6 6 3.5637 -0.8432 1.1815 7 7 4.0410 -1.6370 2.3165 8 6 5.3589 -1.8778 2.4637 9 8 6.1421 -1.5203 1.6045 10 6 5.8503 -2.5731 3.6640 11 6 5.0848 -3.1192 4.6795 12 6 6.0013 -3.6638 5.5819 13 7 7.2039 -3.4373 5.1182 14 7 7.1536 -2.8038 4.0020 15 6 8.3163 -2.3918 3.2117 16 7 1.4441 -2.0621 1.3182 17 6 1.8319 -2.8711 0.1550 18 6 1.1862 -4.2294 0.2500 19 8 0.4727 -4.4971 1.1936 20 7 1.3967 -5.1447 -0.7167 21 6 0.8089 -6.3803 -0.6306 22 1 0.1775 -6.6203 0.2121 23 6 1.0255 -7.3237 -1.6274 24 7 1.7942 -7.0318 -2.6525 25 14 0.2252 -9.0075 -1.5097 26 1 -0.5858 -9.0843 -0.2681 27 1 -0.6530 -9.2215 -2.6880 28 1 1.2775 -10.0548 -1.4798 29 1 -0.3633 0.5796 0.8487 30 1 -0.3633 0.4450 -0.9263 31 1 -0.3633 -1.0248 0.0777 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.8478 -1.3334 0.2502 37 1 4.0098 0.1505 1.2199 38 1 3.4085 -1.9900 2.9617 39 1 4.0076 -3.1241 4.7573 40 1 5.7605 -4.1767 6.5012 41 1 8.6136 -1.3838 3.5009 42 1 9.1416 -3.0803 3.3937 43 1 8.0589 -2.4050 2.1527 44 1 1.6931 -2.5247 2.1796 45 1 2.9158 -2.9846 0.1365 46 1 1.5029 -2.3755 -0.7583 47 1 1.9635 -4.9290 -1.4737 48 1 1.9452 -7.6903 -3.3486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319899697.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:14 Heat of formation + Delta-G solvation = -19.512278 kcal Electronic energy + Delta-G solvation = -29780.334861 eV Core-core repulsion = 25678.016284 eV Total energy + Delta-G solvation = -4102.318577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.55705 -41.02940 -40.11630 -38.92261 -35.97891 -35.64943 -34.31913 -34.05304 -33.22996 -32.18569 -29.78161 -28.39352 -28.06167 -27.30811 -26.08647 -24.67064 -23.26361 -22.29476 -21.67688 -21.11431 -20.24623 -19.74090 -19.13821 -18.20909 -17.45366 -17.34337 -16.92973 -16.73909 -16.53928 -16.11336 -15.94165 -15.66733 -15.57288 -15.33291 -14.85178 -14.67909 -14.55513 -14.46879 -14.02074 -13.91170 -13.75696 -13.52943 -13.31916 -13.23699 -13.08987 -12.84548 -12.79488 -12.61643 -12.39198 -12.11407 -11.92051 -11.80491 -11.72731 -11.50414 -11.37037 -11.23216 -10.48437 -10.32738 -10.13721 -10.04865 -10.00562 -9.36064 -8.46309 -5.94817 0.13102 1.32880 1.36387 1.41637 1.55714 1.58221 2.05219 2.06226 2.09479 2.29079 2.92847 3.21323 3.43888 3.50003 3.57177 3.66936 3.95736 4.09580 4.14854 4.23346 4.24625 4.32401 4.33086 4.41453 4.47737 4.55326 4.57552 4.60663 4.67455 4.78309 4.82429 4.93165 4.95028 5.11787 5.17981 5.19859 5.37129 5.41561 5.47914 5.53425 5.64583 5.66805 5.86646 6.07519 6.20806 6.39359 6.59770 6.88543 7.00942 7.13287 7.57071 8.11514 8.71397 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007696 B = 0.003581 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3637.251397 B = 7817.017324 C =10306.633527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.091 3.909 5 H 0.114 0.886 6 C 0.086 3.914 7 N -0.702 5.702 8 C 0.592 3.408 9 O -0.568 6.568 10 C -0.063 4.063 11 C -0.181 4.181 12 C -0.006 4.006 13 N -0.299 5.299 14 N -0.269 5.269 15 C 0.081 3.919 16 N -0.657 5.657 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.616 6.616 20 N -0.576 5.576 21 C -0.330 4.330 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.411 0.589 39 H 0.185 0.815 40 H 0.217 0.783 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.345 0.655 45 H 0.054 0.946 46 H 0.102 0.898 47 H 0.393 0.607 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 16.204 10.134 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 C -0.202 4.202 4 C -0.019 4.019 5 H 0.132 0.868 6 C -0.039 4.039 7 N -0.354 5.354 8 C 0.378 3.622 9 O -0.448 6.448 10 C -0.192 4.192 11 C -0.210 4.210 12 C -0.181 4.181 13 N -0.132 5.132 14 N -0.057 5.057 15 C -0.059 4.059 16 N -0.289 5.289 17 C -0.069 4.069 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.564 5.564 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.199 1.199 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.248 0.752 39 H 0.203 0.797 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.165 0.835 45 H 0.072 0.928 46 H 0.120 0.880 47 H 0.227 0.773 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.476 16.272 9.854 20.826 hybrid contribution -0.098 -1.272 -0.351 1.323 sum 8.377 15.001 9.503 19.634 Atomic orbital electron populations 1.21658 0.94374 1.01830 1.01388 1.21101 0.96682 0.96593 0.96131 1.21861 1.01088 0.94367 1.02867 1.22064 0.88381 0.90058 1.01434 0.86820 1.22302 0.97003 0.96293 0.88329 1.45570 1.06263 1.54284 1.29325 1.17010 0.83031 0.78165 0.83970 1.90762 1.56193 1.54178 1.43685 1.21517 0.86633 1.10866 1.00142 1.22693 1.01951 1.02495 0.93845 1.24183 0.87213 1.03864 1.02876 1.73200 1.27257 1.13805 0.98968 1.45873 1.06203 1.38411 1.15213 1.22476 0.85047 1.02728 0.95624 1.60251 1.62054 1.02704 1.03902 1.21536 0.97517 0.90809 0.97012 1.20818 0.85225 0.87384 0.83776 1.90489 1.43124 1.81184 1.35436 1.41960 1.44718 1.12546 1.22070 1.19708 1.27765 0.90480 1.08022 0.90083 1.26028 0.97402 1.03266 0.94635 1.69688 1.38214 1.37375 1.11096 0.84893 0.78073 0.77140 0.78394 1.19515 1.19667 1.19859 0.92080 0.92881 0.93524 0.91826 0.92253 0.91916 0.91419 0.92183 0.89296 0.75180 0.79727 0.76605 0.88510 0.87256 0.88306 0.83509 0.92818 0.87989 0.77336 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.05 71.98 0.65 -2.14 16 2 C -0.09 -1.56 1.99 -10.79 -0.02 -1.58 16 3 C -0.14 -1.96 8.96 71.98 0.64 -1.32 16 4 C 0.09 1.69 2.30 44.92 0.10 1.79 16 5 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 6 C 0.09 1.69 4.24 86.38 0.37 2.05 16 7 N -0.70 -14.43 5.34 -466.63 -2.49 -16.93 16 8 C 0.59 15.15 7.79 86.58 0.67 15.83 16 9 O -0.57 -17.32 14.71 -4.12 -0.06 -17.38 16 10 C -0.06 -1.55 6.96 40.78 0.28 -1.27 16 11 C -0.18 -3.67 10.50 22.66 0.24 -3.43 16 12 C -0.01 -0.13 12.03 85.18 1.02 0.90 16 13 N -0.30 -7.31 11.90 -57.14 -0.68 -7.99 16 14 N -0.27 -6.58 3.75 -356.04 -1.33 -7.92 16 15 C 0.08 1.53 10.83 127.77 1.38 2.92 16 16 N -0.66 -17.37 4.91 -495.59 -2.43 -19.80 16 17 C 0.06 2.07 5.31 85.55 0.45 2.52 16 18 C 0.44 20.28 7.82 87.65 0.69 20.97 16 19 O -0.62 -32.48 15.80 -3.05 -0.05 -32.53 16 20 N -0.58 -29.41 5.29 -306.99 -1.62 -31.04 16 21 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -50.30 13.05 21.66 0.28 -50.01 16 25 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.27 7.25 -2.38 -0.02 1.25 16 32 H 0.06 1.30 6.72 -2.39 -0.02 1.28 16 33 H 0.06 0.77 6.70 -2.38 -0.02 0.76 16 34 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 1.43 6.68 -2.38 -0.02 1.41 16 37 H 0.09 1.58 6.83 -2.39 -0.02 1.56 16 38 H 0.41 7.11 6.21 -92.71 -0.58 6.53 16 39 H 0.19 2.68 7.58 -2.91 -0.02 2.66 16 40 H 0.22 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.10 2.14 6.31 -2.39 -0.02 2.12 16 44 H 0.34 9.18 7.06 -89.70 -0.63 8.54 16 45 H 0.05 1.69 6.43 -2.39 -0.02 1.68 16 46 H 0.10 3.12 6.42 -2.39 -0.02 3.10 16 47 H 0.39 19.47 7.90 -92.71 -0.73 18.74 16 48 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -73.26 391.20 0.49 -72.77 By element: Atomic # 1 Polarization: 47.57 SS G_CDS: -0.92 Total: 46.65 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 7.77 Total: 19.10 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -8.28 Total: -133.69 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.11 Total: -49.91 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.26 0.49 -72.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319899697.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.260 kcal (2) G-P(sol) polarization free energy of solvation -73.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds