Wall clock time and date at job start Tue Mar 31 2020 20:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00102 * 2 1 4 4 C 1.34775 * 120.00064 * 179.97438 * 2 1 3 5 5 O 1.21284 * 120.00019 * 359.97438 * 4 2 1 6 6 C 1.50702 * 120.00390 * 180.02562 * 4 2 1 7 7 N 1.46493 * 109.47219 * 179.97438 * 6 4 2 8 8 C 1.34970 * 125.97493 * 125.00231 * 7 6 4 9 9 C 1.35246 * 107.85672 * 179.73368 * 8 7 6 10 10 C 1.40397 * 107.86854 * 0.26402 * 9 8 7 11 11 N 1.40192 * 125.96983 * 180.02562 * 10 9 8 12 12 C 1.34780 * 120.00281 * 359.97438 * 11 10 9 13 13 O 1.21587 * 119.99704 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99982 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00033 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47302 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47415 * 299.99907 * 16 15 14 18 18 C 1.53004 * 109.47307 * 59.99901 * 16 15 14 19 19 C 1.50700 * 109.47216 * 179.97438 * 16 15 14 20 20 H 1.08002 * 120.00267 * 357.00669 * 19 16 15 21 21 C 1.37876 * 120.00183 * 177.00987 * 19 16 15 22 22 N 1.31511 * 120.00020 * 5.53975 * 21 19 16 23 23 Si 1.86807 * 120.00103 * 185.54432 * 21 19 16 24 24 H 1.48501 * 109.47095 * 85.00027 * 23 21 19 25 25 H 1.48499 * 109.46841 * 204.99753 * 23 21 19 26 26 H 1.48497 * 109.46895 * 324.99852 * 23 21 19 27 27 N 1.31204 * 108.05614 * 359.97438 * 10 9 8 28 28 H 1.08999 * 109.47027 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46955 * 300.00214 * 1 2 3 30 30 H 1.09003 * 109.46564 * 60.00050 * 1 2 3 31 31 H 1.09002 * 109.47098 * 269.99562 * 3 2 1 32 32 H 1.08998 * 109.46842 * 30.00038 * 3 2 1 33 33 H 1.09000 * 109.46909 * 149.99789 * 3 2 1 34 34 H 1.09005 * 109.47038 * 60.00066 * 6 4 2 35 35 H 1.09003 * 109.46726 * 300.00372 * 6 4 2 36 36 H 1.08002 * 126.07279 * 359.97438 * 8 7 6 37 37 H 1.08004 * 126.06316 * 180.29659 * 9 8 7 38 38 H 0.97004 * 119.99939 * 179.97438 * 11 10 9 39 39 H 0.97004 * 120.00238 * 359.97438 * 14 12 11 40 40 H 1.08999 * 109.47206 * 299.99986 * 15 14 12 41 41 H 1.09006 * 109.46848 * 59.99546 * 15 14 12 42 42 H 1.09006 * 109.47024 * 53.93314 * 17 16 15 43 43 H 1.08997 * 109.47335 * 173.93057 * 17 16 15 44 44 H 1.08998 * 109.47391 * 293.93552 * 17 16 15 45 45 H 1.09009 * 109.46643 * 60.00072 * 18 16 15 46 46 H 1.08999 * 109.47714 * 179.97438 * 18 16 15 47 47 H 1.08996 * 109.47294 * 300.00330 * 18 16 15 48 48 H 0.97008 * 120.00266 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0015 6 6 3.6459 -1.1673 0.0011 7 7 4.1342 -2.5484 0.0022 8 6 4.9895 -3.0877 -0.8918 9 6 5.1949 -4.3782 -0.5429 10 6 4.4314 -4.6407 0.6056 11 7 4.3640 -5.8636 1.2878 12 6 5.0748 -6.9208 0.8479 13 8 5.7741 -6.8141 -0.1410 14 7 5.0095 -8.0966 1.5035 15 6 5.7817 -9.2459 1.0250 16 6 5.5314 -10.4455 1.9409 17 6 5.9648 -10.0979 3.3665 18 6 4.0413 -10.7925 1.9313 19 6 6.3252 -11.6280 1.4483 20 1 6.9081 -11.5476 0.5427 21 6 6.3074 -12.8125 2.1538 22 7 5.5142 -12.9463 3.1942 23 14 7.4099 -14.2272 1.6317 24 1 8.7562 -14.0539 2.2340 25 1 6.8219 -15.5098 2.0947 26 1 7.5280 -14.2425 0.1515 27 7 3.7928 -3.5412 0.9295 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 2.3793 1.5833 -1.0277 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1383 0.5139 34 1 4.0089 -0.6532 0.8912 35 1 4.0096 -0.6536 -0.8889 36 1 5.4342 -2.5781 -1.7338 37 1 5.8335 -5.0817 -1.0564 38 1 3.8057 -5.9488 2.0766 39 1 4.4512 -8.1818 2.2922 40 1 5.4733 -9.4934 0.0092 41 1 6.8433 -8.9988 1.0323 42 1 5.4697 -9.1798 3.6831 43 1 5.6881 -10.9102 4.0386 44 1 7.0451 -9.9559 3.3934 45 1 3.7326 -11.0403 0.9156 46 1 3.8629 -11.6475 2.5835 47 1 3.4667 -9.9374 2.2873 48 1 5.5019 -13.7795 3.6908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414402647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:09 Heat of formation + Delta-G solvation = 38.867591 kcal Electronic energy + Delta-G solvation = -28730.006363 eV Core-core repulsion = 24630.219327 eV Total energy + Delta-G solvation = -4099.787036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36377 -40.12123 -39.41366 -36.54533 -35.97698 -34.72108 -33.39940 -32.52241 -30.75305 -29.95281 -28.97150 -27.50635 -25.83930 -25.68874 -25.40528 -24.71658 -21.90292 -21.35822 -20.12721 -19.69818 -18.73656 -17.95747 -17.69711 -17.34915 -16.65919 -16.35383 -15.79203 -15.56914 -15.34693 -14.75697 -14.68506 -14.41210 -14.10196 -13.68923 -13.58336 -13.25808 -13.16208 -13.08372 -12.92585 -12.88630 -12.82177 -12.55079 -12.42389 -12.14509 -11.43842 -11.16672 -10.93480 -10.78232 -10.66533 -10.58104 -10.34168 -10.18250 -10.16665 -9.65980 -9.59045 -9.30248 -9.21428 -8.76752 -8.72084 -8.50379 -8.32792 -7.95965 -5.99467 -4.08126 1.79421 2.06578 2.15099 2.53326 2.89729 3.12183 3.31796 3.38197 3.42099 3.77542 3.89243 4.27070 4.40846 4.41914 4.58133 4.61187 4.73163 4.81049 4.89779 5.03367 5.06991 5.27756 5.38135 5.41568 5.74641 5.88184 5.93044 6.19655 6.37556 6.37928 6.53873 6.71508 6.79100 6.86340 6.90341 6.96446 7.05727 7.06320 7.12566 7.14942 7.40328 7.59634 7.70915 7.73399 7.84560 8.03124 8.15105 8.38000 8.43845 8.89334 8.94935 9.57080 11.02595 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032977 B = 0.001828 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.881461 B =15309.734489 C =15762.745701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.074 3.926 4 C 0.496 3.504 5 O -0.501 6.501 6 C 0.129 3.871 7 N -0.370 5.370 8 C 0.053 3.947 9 C -0.253 4.253 10 C 0.325 3.675 11 N -0.653 5.653 12 C 0.707 3.293 13 O -0.576 6.576 14 N -0.724 5.724 15 C 0.150 3.850 16 C 0.055 3.945 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.506 4.506 20 H 0.058 0.942 21 C 0.067 3.933 22 N -0.885 5.885 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.288 1.288 26 H -0.275 1.275 27 N -0.306 5.306 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.409 0.591 39 H 0.396 0.604 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.007 0.993 43 H 0.081 0.919 44 H 0.030 0.970 45 H 0.027 0.973 46 H 0.085 0.915 47 H 0.005 0.995 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 30.026 -4.562 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C -0.069 4.069 4 C 0.282 3.718 5 O -0.373 6.373 6 C 0.003 3.997 7 N -0.155 5.155 8 C -0.090 4.090 9 C -0.283 4.283 10 C 0.067 3.933 11 N -0.304 5.304 12 C 0.406 3.594 13 O -0.453 6.453 14 N -0.379 5.379 15 C 0.028 3.972 16 C 0.054 3.946 17 C -0.186 4.186 18 C -0.188 4.188 19 C -0.545 4.545 20 H 0.077 0.923 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.200 1.200 27 N -0.135 5.135 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.192 0.808 37 H 0.193 0.807 38 H 0.244 0.756 39 H 0.232 0.768 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.025 0.975 43 H 0.100 0.900 44 H 0.049 0.951 45 H 0.046 0.954 46 H 0.104 0.896 47 H 0.024 0.976 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.925 29.935 -4.530 31.058 hybrid contribution 0.488 -0.947 -0.016 1.065 sum -6.437 28.988 -4.546 30.040 Atomic orbital electron populations 1.21688 0.78741 1.04473 1.01251 1.47718 1.07399 1.06070 1.75099 1.21865 0.97332 0.85483 1.02220 1.20770 0.90095 0.83841 0.77123 1.90819 1.69242 1.30556 1.46676 1.21369 0.92282 0.80395 1.05677 1.47424 1.37141 1.08317 1.22593 1.22531 0.95632 0.94739 0.96097 1.21944 1.09351 0.96429 1.00617 1.18888 0.95401 0.86009 0.93001 1.41771 1.49637 1.07320 1.31691 1.15828 0.80269 0.80028 0.83249 1.90803 1.44266 1.83084 1.27114 1.45515 1.50722 1.09756 1.31875 1.21665 0.93796 0.83390 0.98389 1.18385 0.93937 0.90695 0.91562 1.21803 0.98514 0.98509 0.99818 1.21851 0.96303 1.00239 1.00423 1.20949 1.28273 0.95561 1.09668 0.92345 1.24878 0.95282 0.98269 0.95053 1.69829 1.37045 1.26070 1.19387 0.86592 0.80846 0.81502 0.78948 1.20652 1.21387 1.19963 1.77430 1.24912 0.96041 1.15156 0.89416 0.92107 0.92165 0.92129 0.90547 0.90844 0.87155 0.85862 0.80805 0.80654 0.75597 0.76839 0.92588 0.92553 0.97453 0.90039 0.95125 0.95384 0.89608 0.97556 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.69 59.85 0.64 1.13 16 2 N -0.63 -4.08 3.27 -189.51 -0.62 -4.70 16 3 C 0.07 0.15 10.29 59.85 0.62 0.77 16 4 C 0.50 4.97 7.70 -10.99 -0.08 4.88 16 5 O -0.50 -7.74 15.02 5.55 0.08 -7.66 16 6 C 0.13 0.95 5.54 -5.20 -0.03 0.92 16 7 N -0.37 -4.57 3.40 -62.56 -0.21 -4.78 16 8 C 0.05 0.63 11.44 -17.24 -0.20 0.43 16 9 C -0.25 -3.98 9.61 -39.84 -0.38 -4.36 16 10 C 0.33 5.47 8.11 -154.37 -1.25 4.22 16 11 N -0.65 -10.57 5.45 -15.51 -0.08 -10.66 16 12 C 0.71 13.18 8.53 -86.92 -0.74 12.44 16 13 O -0.58 -12.28 13.47 5.29 0.07 -12.21 16 14 N -0.72 -13.25 4.91 -65.23 -0.32 -13.57 16 15 C 0.15 3.21 4.50 -4.05 -0.02 3.19 16 16 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 17 C -0.13 -2.91 8.03 37.16 0.30 -2.61 16 18 C -0.13 -2.97 8.10 37.16 0.30 -2.67 16 19 C -0.51 -13.26 8.01 -34.44 -0.28 -13.54 16 20 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 21 C 0.07 1.76 5.13 -17.82 -0.09 1.67 16 22 N -0.88 -23.70 9.45 55.43 0.52 -23.18 16 23 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 N -0.31 -4.92 11.64 31.44 0.37 -4.55 16 28 H 0.09 0.76 6.90 -51.93 -0.36 0.40 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 32 H 0.08 0.08 8.07 -51.93 -0.42 -0.34 16 33 H 0.07 0.05 6.44 -51.93 -0.33 -0.28 16 34 H 0.11 0.56 7.40 -51.93 -0.38 0.18 16 35 H 0.12 0.39 8.04 -51.93 -0.42 -0.03 16 36 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.18 3.03 5.91 -52.48 -0.31 2.72 16 38 H 0.41 5.58 8.84 -40.82 -0.36 5.22 16 39 H 0.40 6.53 6.17 -40.82 -0.25 6.28 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.01 0.13 6.71 -51.93 -0.35 -0.22 16 43 H 0.08 2.02 6.25 -51.93 -0.32 1.69 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 46 H 0.09 2.16 6.10 -51.93 -0.32 1.84 16 47 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 48 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -35.65 388.48 -7.76 -43.41 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.11 Total: 8.55 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.30 Total: 7.68 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.35 Total: -61.44 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.15 Total: -19.87 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.65 -7.76 -43.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414402647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.276 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds