Wall clock time and date at job start Tue Mar 31 2020 20:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53012 * 109.46931 * 2 1 4 4 H 1.09000 * 109.46515 * 302.96171 * 3 2 1 5 5 C 1.53005 * 109.46857 * 182.96217 * 3 2 1 6 6 N 1.46499 * 109.46778 * 184.99757 * 5 3 2 7 7 C 1.34778 * 120.00120 * 180.02562 * 6 5 3 8 8 O 1.21285 * 119.99556 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00043 * 180.02562 * 7 6 5 10 10 N 1.46505 * 109.47088 * 180.02562 * 9 7 6 11 11 N 1.40085 * 126.03399 * 269.97761 * 10 9 7 12 12 C 1.30839 * 108.20241 * 180.02562 * 11 10 9 13 13 C 1.39868 * 108.20349 * 359.77401 * 12 11 10 14 14 C 1.34950 * 126.03757 * 89.99559 * 10 9 7 15 15 C 1.50698 * 126.12586 * 359.94454 * 14 10 9 16 16 N 1.46899 * 109.47277 * 62.96075 * 3 2 1 17 17 C 1.46903 * 110.99641 * 65.52243 * 16 3 2 18 18 C 1.50705 * 109.46661 * 182.18334 * 17 16 3 19 19 O 1.21283 * 120.00085 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99639 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99539 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00126 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99442 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99744 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00410 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.46964 * 90.00245 * 25 23 21 27 27 H 1.48499 * 109.47227 * 210.00107 * 25 23 21 28 28 H 1.48500 * 109.47146 * 330.00454 * 25 23 21 29 29 H 1.08997 * 109.47390 * 294.78435 * 1 2 3 30 30 H 1.09001 * 109.46870 * 54.78250 * 1 2 3 31 31 H 1.08997 * 109.47015 * 174.77424 * 1 2 3 32 32 H 1.08993 * 109.47719 * 239.99610 * 2 1 3 33 33 H 1.09001 * 109.47202 * 119.99018 * 2 1 3 34 34 H 1.09003 * 109.47043 * 65.00235 * 5 3 2 35 35 H 1.09000 * 109.47096 * 304.99887 * 5 3 2 36 36 H 0.97003 * 120.00249 * 0.02562 * 6 5 3 37 37 H 1.08994 * 109.47158 * 59.99990 * 9 7 6 38 38 H 1.09006 * 109.47022 * 299.99342 * 9 7 6 39 39 H 1.07993 * 125.89745 * 180.02562 * 12 11 10 40 40 H 1.08000 * 126.04407 * 180.23146 * 13 12 11 41 41 H 1.08999 * 109.47012 * 90.00082 * 15 14 10 42 42 H 1.08998 * 109.47182 * 329.99934 * 15 14 10 43 43 H 1.08998 * 109.46865 * 209.99736 * 15 14 10 44 44 H 1.00892 * 110.99776 * 189.47803 * 16 3 2 45 45 H 1.08999 * 109.47575 * 302.17929 * 17 16 3 46 46 H 1.08994 * 109.47369 * 62.18812 * 17 16 3 47 47 H 0.96996 * 120.00051 * 359.97438 * 20 18 17 48 48 H 0.97006 * 120.00006 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6338 1.9714 -0.8623 5 6 3.5682 1.4432 -0.0745 6 7 4.0623 2.8172 0.0455 7 6 5.3869 3.0628 0.0061 8 8 6.1698 2.1464 -0.1292 9 6 5.8952 4.4760 0.1302 10 7 7.3585 4.4768 0.0575 11 7 8.2375 4.3588 1.1418 12 6 9.4617 4.4020 0.6821 13 6 9.4016 4.5435 -0.7081 14 6 8.0975 4.5918 -1.0658 15 6 7.5656 4.7409 -2.4679 16 7 1.6096 2.1142 1.2336 17 6 2.2438 1.5078 2.4118 18 6 1.7384 2.1861 3.6591 19 8 0.9300 3.0862 3.5748 20 7 2.1857 1.7930 4.8682 21 6 1.7256 2.4096 6.0029 22 1 1.0050 3.2106 5.9279 23 6 2.1863 2.0040 7.2495 24 7 1.7457 2.5954 8.3371 25 14 3.4321 0.6181 7.3793 26 1 4.8055 1.1809 7.3307 27 1 3.2379 -0.1034 8.6626 28 1 3.2433 -0.3248 6.2477 29 1 -0.3634 0.4308 0.9330 30 1 -0.3633 0.5926 -0.8396 31 1 -0.3633 -1.0234 -0.0936 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8855 1.0252 -1.0299 35 1 3.9718 0.8396 0.7383 36 1 3.4362 3.5501 0.1534 37 1 5.5783 4.8935 1.0859 38 1 5.4912 5.0801 -0.6822 39 1 10.3629 4.3354 1.2734 40 1 10.2468 4.6055 -1.3777 41 1 7.4413 5.7988 -2.6987 42 1 6.6027 4.2362 -2.5468 43 1 8.2681 4.2954 -3.1722 44 1 1.7981 3.1044 1.1908 45 1 1.9987 0.4465 2.4506 46 1 3.3250 1.6288 2.3451 47 1 2.8326 1.0733 4.9355 48 1 2.0670 2.3120 9.2074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481855242.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:38 Heat of formation + Delta-G solvation = 14.509686 kcal Electronic energy + Delta-G solvation = -29412.086657 eV Core-core repulsion = 25311.243383 eV Total energy + Delta-G solvation = -4100.843274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50325 -40.06050 -38.74830 -37.45879 -34.31439 -33.98398 -33.69375 -32.29908 -32.13157 -31.64339 -29.27564 -27.58495 -27.17456 -26.48573 -24.16099 -23.46788 -21.51282 -21.05166 -20.41662 -19.80815 -19.31467 -18.45213 -17.83096 -17.13931 -16.84132 -16.02382 -15.85987 -15.54481 -15.15933 -14.88328 -14.64380 -14.34371 -14.14596 -14.03746 -13.96195 -13.72220 -13.43842 -13.21106 -13.17963 -13.01440 -12.88931 -12.51847 -12.48719 -12.31037 -12.09123 -12.04877 -11.69444 -11.44902 -11.16138 -10.99903 -10.74059 -10.72753 -10.59351 -10.44616 -9.98970 -9.58416 -9.44512 -9.40215 -8.68611 -8.65991 -8.27015 -8.18813 -6.32678 -3.84144 1.59928 2.12899 2.22159 2.72259 2.89608 3.03202 3.08211 3.16095 3.70812 3.99186 4.10130 4.18890 4.30115 4.37021 4.49269 4.65685 4.68288 4.75404 4.91888 4.94608 4.98569 5.10580 5.18352 5.21983 5.36918 5.41609 5.42872 5.48029 5.56092 5.59773 5.64327 5.72901 5.81001 5.89013 5.94786 5.96443 6.03769 6.15866 6.44447 6.48785 6.73619 6.93374 7.06298 7.38405 7.55984 7.56532 7.81321 8.12210 8.57497 8.93003 9.40766 9.79932 10.80268 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.003290 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.459528 B = 8509.024725 C =10849.396780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.091 0.909 5 C 0.081 3.919 6 N -0.726 5.726 7 C 0.498 3.502 8 O -0.519 6.519 9 C 0.112 3.888 10 N -0.357 5.357 11 N -0.284 5.284 12 C 0.049 3.951 13 C -0.274 4.274 14 C 0.090 3.910 15 C -0.092 4.092 16 N -0.651 5.651 17 C 0.040 3.960 18 C 0.450 3.550 19 O -0.566 6.566 20 N -0.589 5.589 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.043 3.957 24 N -0.880 5.880 25 Si 0.877 3.123 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.401 0.599 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.183 0.817 40 H 0.146 0.854 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.346 0.654 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.370 0.630 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.821 0.629 -24.053 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.109 0.891 5 C -0.044 4.044 6 N -0.380 5.380 7 C 0.281 3.719 8 O -0.393 6.393 9 C -0.014 4.014 10 N -0.139 5.139 11 N -0.104 5.104 12 C -0.138 4.138 13 C -0.303 4.303 14 C -0.036 4.036 15 C -0.150 4.150 16 N -0.283 5.283 17 C -0.093 4.093 18 C 0.235 3.765 19 O -0.448 6.448 20 N -0.228 5.228 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.160 4.160 24 N -0.520 5.520 25 Si 0.704 3.296 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.236 0.764 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.200 0.800 40 H 0.164 0.836 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.166 0.834 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.380 0.120 -22.840 24.329 hybrid contribution 2.174 -0.485 -0.284 2.245 sum 10.554 -0.365 -23.124 25.421 Atomic orbital electron populations 1.21620 0.94423 1.00694 1.03198 1.21508 0.97505 0.94165 1.01994 1.22007 0.90080 0.97386 0.93927 0.89067 1.22237 0.96649 0.82716 1.02845 1.45899 1.06838 1.10206 1.75031 1.20802 0.82634 0.91375 0.77054 1.90780 1.55359 1.45719 1.47449 1.21445 0.77154 0.95586 1.07224 1.47919 1.04665 1.56882 1.04449 1.77471 0.99975 1.23421 1.09508 1.23855 0.95764 0.99486 0.94653 1.21194 0.95569 1.17776 0.95806 1.21057 0.92008 1.00659 0.89905 1.20446 1.01853 1.02917 0.89833 1.60192 1.60834 1.07461 0.99843 1.21825 0.96638 1.00181 0.90621 1.19657 0.85963 0.86975 0.83865 1.90557 1.35784 1.32249 1.86208 1.42220 1.40512 1.33885 1.06216 1.19415 1.24543 1.17462 0.81988 0.86253 1.25030 0.97924 0.97952 0.95110 1.69620 1.43187 1.41265 0.97927 0.86704 0.82111 0.82253 0.78545 1.19561 1.20082 1.19508 0.90954 0.93098 0.93467 0.91744 0.91553 0.90981 0.90818 0.76377 0.85288 0.85994 0.79967 0.83585 0.90097 0.91444 0.89499 0.83427 0.89158 0.93461 0.79734 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.71 37.16 0.36 -1.10 16 2 C -0.11 -1.07 5.29 -26.73 -0.14 -1.22 16 3 C 0.08 0.73 2.73 -67.70 -0.18 0.55 16 4 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 5 C 0.08 0.80 4.47 -4.04 -0.02 0.79 16 6 N -0.73 -6.76 5.31 -60.29 -0.32 -7.08 16 7 C 0.50 5.79 7.90 -10.99 -0.09 5.70 16 8 O -0.52 -8.39 16.43 5.55 0.09 -8.29 16 9 C 0.11 1.05 6.55 -5.19 -0.03 1.02 16 10 N -0.36 -4.39 3.10 -58.31 -0.18 -4.57 16 11 N -0.28 -4.17 12.58 30.62 0.39 -3.78 16 12 C 0.05 0.59 12.03 -17.36 -0.21 0.38 16 13 C -0.27 -2.89 10.72 -40.01 -0.43 -3.32 16 14 C 0.09 0.95 6.93 -82.26 -0.57 0.38 16 15 C -0.09 -0.60 9.90 36.00 0.36 -0.24 16 16 N -0.65 -8.46 5.38 -107.98 -0.58 -9.04 16 17 C 0.04 0.62 5.32 -4.97 -0.03 0.60 16 18 C 0.45 9.89 7.82 -10.98 -0.09 9.80 16 19 O -0.57 -14.56 15.83 5.55 0.09 -14.47 16 20 N -0.59 -14.01 5.09 -10.96 -0.06 -14.07 16 21 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 23 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 24 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 25 Si 0.88 19.80 27.74 -169.99 -4.71 15.09 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 29 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.69 6.36 -51.93 -0.33 0.36 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.89 6.69 -51.93 -0.35 0.54 16 36 H 0.40 2.88 7.23 -40.82 -0.30 2.58 16 37 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.12 0.64 7.66 -51.93 -0.40 0.24 16 39 H 0.18 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.43 7.72 -51.93 -0.40 0.03 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.35 4.41 7.24 -39.30 -0.28 4.13 16 45 H 0.09 1.32 6.30 -51.93 -0.33 0.99 16 46 H 0.05 0.70 6.41 -51.93 -0.33 0.37 16 47 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -38.04 397.32 -6.98 -45.02 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -7.14 Total: 14.63 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.32 Total: 5.64 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: 0.02 Total: -63.60 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.18 Total: -22.77 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.71 Total: 15.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.04 -6.98 -45.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481855242.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.531 kcal (2) G-P(sol) polarization free energy of solvation -38.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds