Wall clock time and date at job start Tue Mar 31 2020 20:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34775 * 119.99821 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00210 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.46853 * 180.02562 * 9 7 6 11 11 N 1.40084 * 126.03822 * 269.68904 * 10 9 7 12 12 C 1.30839 * 108.20473 * 179.86240 * 11 10 9 13 13 C 1.39863 * 108.20173 * 0.40005 * 12 11 10 14 14 C 1.34945 * 126.03583 * 90.00658 * 10 9 7 15 15 C 1.50703 * 126.12926 * 359.97438 * 14 10 9 16 16 N 1.46901 * 109.46853 * 294.61081 * 3 2 1 17 17 C 1.46906 * 110.99674 * 300.92051 * 16 3 2 18 18 C 1.50702 * 109.46969 * 185.68018 * 17 16 3 19 19 O 1.21289 * 119.99926 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99669 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99875 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99503 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00219 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00159 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 120.00195 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46997 * 59.99731 * 25 23 21 27 27 H 1.48495 * 109.47119 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47040 * 300.00259 * 25 23 21 29 29 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 30 30 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 31 31 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 33 33 H 1.09002 * 109.47248 * 119.99843 * 2 1 3 34 34 H 1.09005 * 109.47214 * 294.99805 * 5 3 2 35 35 H 1.08996 * 109.47677 * 55.00055 * 5 3 2 36 36 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08992 * 109.47000 * 300.00406 * 9 7 6 38 38 H 1.09004 * 109.46825 * 60.00248 * 9 7 6 39 39 H 1.08004 * 125.89533 * 180.14973 * 12 11 10 40 40 H 1.08001 * 126.04157 * 179.74512 * 13 12 11 41 41 H 1.08998 * 109.46721 * 89.99856 * 15 14 10 42 42 H 1.08994 * 109.47409 * 209.99995 * 15 14 10 43 43 H 1.09003 * 109.46500 * 330.00344 * 15 14 10 44 44 H 1.00896 * 111.00131 * 64.86814 * 16 3 2 45 45 H 1.09002 * 109.47048 * 65.68091 * 17 16 3 46 46 H 1.09004 * 109.47096 * 305.67600 * 17 16 3 47 47 H 0.97000 * 120.00767 * 359.97438 * 20 18 17 48 48 H 0.96999 * 120.00152 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1616 2.1491 0.2832 9 6 5.8983 4.4749 -0.0191 10 7 7.3575 4.4768 0.1108 11 7 8.0786 4.6186 1.3034 12 6 9.3545 4.5676 1.0182 13 6 9.4868 4.4012 -0.3642 14 6 8.2445 4.3484 -0.8981 15 6 7.9113 4.1770 -2.3578 16 7 1.6594 2.0964 -1.2592 17 6 2.2178 1.3803 -2.4140 18 6 1.9258 2.1538 -3.6739 19 8 1.3124 3.1985 -3.6157 20 7 2.3453 1.6841 -4.8654 21 6 2.0792 2.3875 -6.0118 22 1 1.5330 3.3178 -5.9599 23 6 2.5121 1.9036 -7.2401 24 7 3.1772 0.7719 -7.3032 25 14 2.1489 2.8617 -8.8022 26 1 2.7647 4.2099 -8.7104 27 1 2.7131 2.1376 -9.9694 28 1 0.6796 2.9989 -8.9683 29 1 -0.3634 0.4961 0.9000 30 1 -0.3633 0.5314 -0.8796 31 1 -0.3633 -1.0275 -0.0203 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1086 35 1 3.9997 0.8297 -0.6519 36 1 3.4418 3.5480 -0.1274 37 1 5.6199 4.8786 -0.9925 38 1 5.4623 5.0903 0.7678 39 1 10.1655 4.6451 1.7272 40 1 10.4163 4.3278 -0.9093 41 1 7.8400 5.1561 -2.8315 42 1 8.6943 3.5946 -2.8433 43 1 6.9584 3.6565 -2.4542 44 1 0.6567 2.1787 -1.3352 45 1 1.7650 0.3911 -2.4817 46 1 3.2962 1.2787 -2.2917 47 1 2.8356 0.8484 -4.9121 48 1 3.4791 0.4339 -8.1608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481855244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:41 Heat of formation + Delta-G solvation = -22.407734 kcal Electronic energy + Delta-G solvation = -29478.578819 eV Core-core repulsion = 25376.134685 eV Total energy + Delta-G solvation = -4102.444134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26611 -40.84161 -40.13989 -38.65270 -35.94442 -35.21104 -34.45387 -33.29726 -32.98479 -32.78733 -30.22584 -28.57948 -27.88004 -27.60193 -26.02555 -24.28616 -22.26801 -21.86696 -21.61301 -20.84228 -20.36101 -19.84210 -18.40237 -18.31709 -17.87141 -17.11689 -16.69559 -16.54126 -16.50134 -15.92645 -15.85119 -15.76508 -15.24332 -15.09981 -14.90482 -14.70028 -14.60514 -14.35135 -14.04135 -13.82632 -13.63037 -13.60071 -13.51461 -13.21611 -13.11788 -12.94601 -12.87977 -12.72576 -12.41512 -12.32459 -12.13034 -11.85299 -11.69721 -11.59859 -11.47279 -11.32446 -10.33252 -10.20352 -10.11401 -9.99633 -9.45560 -9.35073 -8.44846 -5.93633 0.82116 1.40491 1.41921 1.42806 1.46787 1.53221 1.93717 2.07600 2.23000 2.30284 2.93423 3.22489 3.50776 3.59109 3.66401 3.71921 3.76599 4.01139 4.08314 4.14409 4.15871 4.27704 4.30277 4.34697 4.45991 4.51884 4.55535 4.64154 4.73101 4.77637 4.79186 4.82509 4.91242 4.98124 5.10506 5.23714 5.25145 5.36489 5.37423 5.42213 5.74631 5.87304 6.01260 6.08485 6.39050 6.49671 6.61068 6.75035 7.13372 7.14340 7.58421 8.12904 8.72245 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007922 B = 0.003420 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.804514 B = 8185.919184 C =11044.038539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.114 0.886 5 C 0.128 3.872 6 N -0.698 5.698 7 C 0.494 3.506 8 O -0.577 6.577 9 C 0.110 3.890 10 N -0.366 5.366 11 N -0.330 5.330 12 C 0.044 3.956 13 C -0.288 4.288 14 C 0.083 3.917 15 C -0.093 4.093 16 N -0.662 5.662 17 C 0.062 3.938 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.082 0.918 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.274 1.274 28 H -0.272 1.272 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.420 0.580 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.211 0.789 40 H 0.167 0.833 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.353 0.647 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.393 0.607 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.422 2.670 15.396 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.197 4.197 3 C -0.025 4.025 4 H 0.132 0.868 5 C 0.003 3.997 6 N -0.351 5.351 7 C 0.279 3.721 8 O -0.457 6.457 9 C -0.015 4.015 10 N -0.149 5.149 11 N -0.151 5.151 12 C -0.141 4.141 13 C -0.316 4.316 14 C -0.044 4.044 15 C -0.152 4.152 16 N -0.295 5.295 17 C -0.070 4.070 18 C 0.230 3.770 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.258 0.742 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.228 0.772 40 H 0.185 0.815 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.173 0.827 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.226 0.774 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.108 3.202 16.339 17.149 hybrid contribution -0.096 -0.939 -1.696 1.941 sum 4.012 2.263 14.643 15.350 Atomic orbital electron populations 1.21740 0.94684 1.02341 1.02041 1.22177 0.97149 0.97035 1.03334 1.21946 0.93195 0.94492 0.92887 0.86786 1.21451 0.93671 0.83023 1.01527 1.45702 1.06476 1.10956 1.71941 1.21157 0.82962 0.91556 0.76414 1.90733 1.57094 1.47354 1.50486 1.21665 0.76543 0.94967 1.08330 1.48109 1.05403 1.56876 1.04503 1.77250 1.06213 1.25964 1.05634 1.24367 0.94368 0.98527 0.96887 1.21564 0.97644 1.17702 0.94718 1.21596 0.90538 0.99448 0.92841 1.20539 1.03083 1.04186 0.87348 1.60181 1.18069 1.51498 0.99719 1.21522 1.01394 0.95289 0.88838 1.20781 0.83412 0.87491 0.85342 1.90488 1.46021 1.26464 1.87210 1.41958 1.50642 1.23214 1.05487 1.19622 1.35152 1.06196 0.85073 0.90052 1.26011 0.96123 0.97231 1.01879 1.69673 1.38079 1.20718 1.27846 0.85029 0.78640 0.78131 0.76817 1.19518 1.19835 1.19705 0.91112 0.93856 0.92012 0.92265 0.89669 0.90601 0.93100 0.74219 0.83854 0.83563 0.77236 0.81521 0.88193 0.88466 0.92436 0.82657 0.91839 0.89142 0.77365 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.71 71.98 0.70 -1.68 16 2 C -0.16 -2.61 5.17 30.60 0.16 -2.45 16 3 C 0.08 1.53 2.70 44.92 0.12 1.65 16 4 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 5 C 0.13 2.74 4.70 86.38 0.41 3.15 16 6 N -0.70 -15.29 5.39 -463.05 -2.50 -17.79 16 7 C 0.49 13.13 7.90 87.66 0.69 13.82 16 8 O -0.58 -20.73 16.43 -3.03 -0.05 -20.78 16 9 C 0.11 2.37 6.55 85.63 0.56 2.93 16 10 N -0.37 -9.88 3.10 -338.40 -1.05 -10.93 16 11 N -0.33 -9.55 12.58 -57.02 -0.72 -10.27 16 12 C 0.04 1.06 12.03 85.23 1.02 2.08 16 13 C -0.29 -6.71 10.72 21.99 0.24 -6.47 16 14 C 0.08 2.10 6.93 41.41 0.29 2.39 16 15 C -0.09 -1.97 9.90 71.24 0.71 -1.26 16 16 N -0.66 -16.58 5.36 -495.55 -2.65 -19.23 16 17 C 0.06 1.94 5.34 85.56 0.46 2.39 16 18 C 0.44 19.61 7.83 87.66 0.69 20.30 16 19 O -0.62 -31.38 15.90 -3.06 -0.05 -31.42 16 20 N -0.58 -28.46 5.29 -306.99 -1.62 -30.09 16 21 C -0.33 -18.16 9.68 84.04 0.81 -17.34 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 24 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 25 Si 0.99 41.86 29.55 68.60 2.03 43.89 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.81 6.85 -2.39 -0.02 0.80 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.15 6.23 -2.39 -0.01 1.13 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.05 1.31 6.57 -2.39 -0.02 1.29 16 36 H 0.42 7.96 8.14 -92.71 -0.75 7.21 16 37 H 0.14 2.47 7.66 -2.39 -0.02 2.45 16 38 H 0.15 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.21 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.37 7.72 -2.39 -0.02 1.35 16 44 H 0.35 9.20 7.23 -89.70 -0.65 8.56 16 45 H 0.06 1.82 6.49 -2.39 -0.02 1.80 16 46 H 0.09 2.80 6.15 -2.39 -0.01 2.79 16 47 H 0.39 18.88 7.90 -92.71 -0.73 18.14 16 48 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -75.88 400.26 -0.13 -76.02 By element: Atomic # 1 Polarization: 51.27 SS G_CDS: -1.12 Total: 50.15 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 7.31 Total: 19.30 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -8.26 Total: -137.15 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -0.10 Total: -52.20 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -75.88 -0.13 -76.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481855244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.607 kcal (2) G-P(sol) polarization free energy of solvation -75.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds