Wall clock time and date at job start Tue Mar 31 2020 19:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46897 * 2 1 4 4 C 1.52996 * 109.47084 * 119.99748 * 2 1 3 5 5 C 1.53008 * 109.46758 * 64.99878 * 4 2 1 6 6 H 1.09000 * 109.47112 * 304.99783 * 5 4 2 7 7 C 1.53008 * 109.46744 * 184.99886 * 5 4 2 8 8 N 1.46902 * 109.46622 * 185.00131 * 7 5 4 9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46990 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99883 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99971 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00130 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99977 * 0.02562 * 13 12 10 15 15 C 1.38955 * 120.00248 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99876 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99984 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47362 * 90.00146 * 17 15 13 19 19 H 1.48502 * 109.47281 * 210.00539 * 17 15 13 20 20 H 1.48506 * 109.47254 * 330.00012 * 17 15 13 21 21 N 1.46503 * 109.47102 * 65.00207 * 5 4 2 22 22 C 1.34774 * 119.99681 * 274.99646 * 21 5 4 23 23 O 1.21604 * 120.00228 * 0.02562 * 22 21 5 24 24 C 1.47423 * 119.99924 * 180.02562 * 22 21 5 25 25 C 1.41293 * 126.41650 * 359.68943 * 24 22 21 26 26 N 1.30449 * 108.02348 * 179.85488 * 25 24 22 27 27 N 1.39931 * 108.89887 * 0.40932 * 26 25 24 28 28 H 0.97001 * 125.75881 * 179.74111 * 27 26 25 29 29 C 1.34264 * 108.48945 * 359.73279 * 27 26 25 30 30 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47145 * 300.00249 * 1 2 3 32 32 H 1.09002 * 109.47466 * 59.99617 * 1 2 3 33 33 H 1.08997 * 109.46684 * 239.99782 * 2 1 3 34 34 H 1.09004 * 109.46816 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47391 * 299.99652 * 3 2 1 36 36 H 1.08997 * 109.47631 * 60.00362 * 3 2 1 37 37 H 1.08998 * 109.47458 * 305.00171 * 4 2 1 38 38 H 1.08994 * 109.47143 * 184.99746 * 4 2 1 39 39 H 1.08990 * 109.46924 * 65.00270 * 7 5 4 40 40 H 1.09004 * 109.46978 * 305.00147 * 7 5 4 41 41 H 1.00896 * 111.00219 * 303.95583 * 8 7 5 42 42 H 1.09002 * 109.46991 * 299.99841 * 9 8 7 43 43 H 1.09000 * 109.47202 * 60.00133 * 9 8 7 44 44 H 0.97000 * 120.00083 * 0.02562 * 12 10 9 45 45 H 0.96998 * 120.00198 * 179.97438 * 16 15 13 46 46 H 0.96998 * 120.00224 * 94.99812 * 21 5 4 47 47 H 1.07997 * 125.98676 * 359.97438 * 25 24 22 48 48 H 1.07998 * 126.28933 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1954 1.1880 6 1 0.5562 -2.2706 1.0527 7 6 2.0353 -2.8888 2.4919 8 7 1.7561 -4.3272 2.3872 9 6 2.1291 -5.0272 3.6237 10 6 1.8295 -6.4970 3.4789 11 8 1.3526 -6.9198 2.4470 12 7 2.0925 -7.3417 4.4956 13 6 1.8194 -8.6787 4.3640 14 1 1.3940 -9.0551 3.4455 15 6 2.0910 -9.5498 5.4120 16 7 2.6091 -9.0918 6.5295 17 14 1.7196 -11.3716 5.2325 18 1 2.9078 -12.0665 4.6752 19 1 1.3905 -11.9432 6.5630 20 1 0.5649 -11.5535 4.3164 21 7 2.3147 -2.8421 0.0626 22 6 1.7814 -2.7779 -1.1735 23 8 0.7365 -2.1828 -1.3548 24 6 2.4648 -3.4290 -2.3058 25 6 3.6806 -4.1468 -2.2513 26 7 3.9535 -4.5705 -3.4545 27 7 2.9453 -4.1424 -4.3253 28 1 2.9069 -4.3187 -5.2784 29 6 2.0398 -3.4466 -3.6191 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2617 2.1370 38 1 3.1263 -0.6443 1.2951 39 1 1.4633 -2.4668 3.3181 40 1 3.0996 -2.7374 2.6721 41 1 0.7878 -4.4917 2.1562 42 1 3.1942 -4.8906 3.8113 43 1 1.5581 -4.6201 4.4582 44 1 2.4742 -7.0036 5.3207 45 1 2.7984 -9.6998 7.2613 46 1 3.1483 -3.3164 0.2071 47 1 4.2782 -4.3167 -1.3679 48 1 1.1435 -2.9858 -4.0072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482378641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:08 Heat of formation + Delta-G solvation = -9.551412 kcal Electronic energy + Delta-G solvation = -29273.221608 eV Core-core repulsion = 25171.334966 eV Total energy + Delta-G solvation = -4101.886642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47484 -39.75764 -38.25891 -36.86264 -35.41786 -34.02885 -33.54654 -31.99040 -31.22064 -30.72988 -29.59352 -27.28910 -27.04860 -25.04358 -23.78708 -23.06267 -22.09945 -21.09853 -20.04541 -19.87656 -19.23003 -18.71230 -17.88039 -16.55213 -16.30876 -15.96083 -15.62642 -15.17195 -14.95117 -14.72641 -14.56402 -14.44437 -14.09220 -13.98163 -13.75572 -13.49410 -13.32672 -13.10015 -12.94737 -12.80888 -12.24805 -12.22523 -11.98956 -11.71534 -11.54135 -11.48193 -11.28677 -11.24757 -11.03256 -10.76142 -10.53049 -10.41479 -10.38776 -10.21046 -10.03138 -9.66043 -9.50134 -9.02759 -8.75558 -8.45787 -8.07607 -7.95255 -6.41298 -3.81916 1.41471 2.07558 2.51294 3.18379 3.26964 3.32819 3.35037 3.54557 3.91883 4.05831 4.27764 4.52472 4.65356 4.74757 4.92346 4.95999 5.04036 5.08832 5.17935 5.19271 5.24850 5.31558 5.42862 5.52423 5.53570 5.64355 5.71201 5.74702 5.80275 5.81681 5.89812 5.97105 5.97464 6.09422 6.20261 6.22471 6.27327 6.46563 6.56425 6.67179 6.87193 7.17604 7.29379 7.55840 7.62547 7.73357 8.07068 8.44033 8.62035 9.18781 9.55193 10.06785 10.76519 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.002617 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.678589 B =10695.036569 C =12573.577818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.124 4.124 5 C 0.150 3.850 6 H 0.090 0.910 7 C 0.047 3.953 8 N -0.665 5.665 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.564 5.564 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 N -0.701 5.701 22 C 0.595 3.405 23 O -0.548 6.548 24 C -0.288 4.288 25 C 0.089 3.911 26 N -0.297 5.297 27 N -0.467 5.467 28 H 0.443 0.557 29 C 0.128 3.872 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.351 0.649 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.403 0.597 47 H 0.191 0.809 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.530 19.163 -13.912 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.163 4.163 5 C 0.044 3.956 6 H 0.108 0.892 7 C -0.083 4.083 8 N -0.298 5.298 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.201 5.201 13 C -0.428 4.428 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.756 3.244 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.351 5.351 22 C 0.383 3.617 23 O -0.428 6.428 24 C -0.302 4.302 25 C -0.099 4.099 26 N -0.118 5.118 27 N -0.172 5.172 28 H 0.287 0.713 29 C -0.024 4.024 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.170 0.830 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.238 0.762 47 H 0.208 0.792 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.937 18.382 -15.547 24.153 hybrid contribution -0.729 -0.367 1.329 1.560 sum 1.208 18.014 -14.218 22.981 Atomic orbital electron populations 1.21835 0.94923 1.03000 0.99756 1.21130 0.96557 0.94874 0.98526 1.21871 1.00396 0.96943 1.01229 1.22052 1.01084 0.94516 0.98675 1.21056 0.98540 0.90915 0.85056 0.89161 1.22307 1.01723 0.88829 0.95467 1.60051 1.29011 1.06904 1.33789 1.21679 1.01489 0.94136 0.90919 1.19812 0.85104 0.87186 0.85298 1.90536 1.48918 1.78017 1.29066 1.41863 1.55918 1.07597 1.14746 1.19696 1.39081 0.82289 1.01731 0.87964 1.25252 0.97107 1.00604 0.94981 1.69609 1.43804 1.36321 1.04660 0.85868 0.78958 0.82048 0.77487 1.20392 1.20948 1.19437 1.45542 1.27315 1.55608 1.06638 1.17123 0.83939 0.78675 0.81965 1.90754 1.23207 1.44129 1.84665 1.20367 1.00911 1.14497 0.94474 1.24159 0.95228 0.94486 0.96044 1.77185 1.10961 1.22661 1.01032 1.46239 1.17930 1.41856 1.11191 0.71288 1.23017 0.94564 0.93230 0.91638 0.90555 0.94414 0.93732 0.90320 0.93280 0.93165 0.93148 0.91249 0.91748 0.94000 0.90514 0.82973 0.89608 0.93899 0.77494 0.91893 0.76194 0.79220 0.79379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.03 37.16 0.30 -1.20 16 2 C -0.09 -0.93 2.38 -90.62 -0.22 -1.15 16 3 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 4 C -0.12 -1.13 4.36 -26.73 -0.12 -1.24 16 5 C 0.15 1.56 2.41 -67.92 -0.16 1.40 16 6 H 0.09 1.11 5.92 -51.93 -0.31 0.80 16 7 C 0.05 0.50 5.24 -3.82 -0.02 0.48 16 8 N -0.66 -9.84 5.85 -115.05 -0.67 -10.51 16 9 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 10 C 0.44 10.18 7.82 -10.99 -0.09 10.09 16 11 O -0.58 -15.60 15.78 5.55 0.09 -15.52 16 12 N -0.56 -14.14 5.29 -10.97 -0.06 -14.20 16 13 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 14 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 17 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 N -0.70 -7.59 4.74 -54.87 -0.26 -7.85 16 22 C 0.60 7.25 6.37 -12.52 -0.08 7.17 16 23 O -0.55 -7.64 11.85 5.27 0.06 -7.58 16 24 C -0.29 -3.19 6.13 -105.07 -0.64 -3.83 16 25 C 0.09 0.97 11.50 -16.98 -0.20 0.77 16 26 N -0.30 -3.39 12.63 30.86 0.39 -3.00 16 27 N -0.47 -3.90 7.29 30.85 0.22 -3.67 16 28 H 0.44 2.10 8.96 -182.72 -1.64 0.46 16 29 C 0.13 1.15 11.82 -16.56 -0.20 0.95 16 30 H 0.08 0.97 4.75 -51.93 -0.25 0.72 16 31 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.93 5.19 -51.93 -0.27 0.66 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.40 4.04 7.56 -40.82 -0.31 3.73 16 47 H 0.19 1.65 7.50 -52.49 -0.39 1.26 16 48 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -34.03 393.26 -8.35 -42.38 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -8.40 Total: 16.36 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.35 Total: 5.35 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 0.35 Total: -62.99 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.15 Total: -23.10 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.03 -8.35 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482378641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.828 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds