Wall clock time and date at job start Tue Mar 31 2020 20:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47483 * 2 1 4 4 H 1.08997 * 109.47021 * 302.96936 * 3 2 1 5 5 C 1.53000 * 109.47304 * 182.96589 * 3 2 1 6 6 N 1.46499 * 109.47077 * 185.00095 * 5 3 2 7 7 C 1.34773 * 120.00079 * 180.02562 * 6 5 3 8 8 O 1.21573 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.47705 * 120.00238 * 180.02562 * 7 6 5 10 10 C 1.41511 * 126.51912 * 180.32255 * 9 7 6 11 11 C 1.35364 * 105.49944 * 180.14088 * 10 9 7 12 12 N 1.35033 * 107.23236 * 359.60825 * 11 10 9 13 13 C 1.46504 * 124.88501 * 180.24073 * 12 11 10 14 14 C 1.53004 * 109.47005 * 124.99706 * 13 12 11 15 15 N 1.28466 * 110.22825 * 0.25484 * 12 11 10 16 16 N 1.46898 * 109.46905 * 62.96571 * 3 2 1 17 17 C 1.46901 * 111.00326 * 65.52305 * 16 3 2 18 18 C 1.50696 * 109.47419 * 182.17867 * 17 16 3 19 19 O 1.21293 * 120.00059 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00289 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00362 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99829 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00226 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00112 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46935 * 90.00608 * 25 23 21 27 27 H 1.48497 * 109.47045 * 210.00443 * 25 23 21 28 28 H 1.48494 * 109.47136 * 330.00429 * 25 23 21 29 29 H 1.08996 * 109.47099 * 174.77986 * 1 2 3 30 30 H 1.09002 * 109.46485 * 294.77855 * 1 2 3 31 31 H 1.08994 * 109.46743 * 54.77647 * 1 2 3 32 32 H 1.09006 * 109.47042 * 239.99684 * 2 1 3 33 33 H 1.09004 * 109.46935 * 120.00346 * 2 1 3 34 34 H 1.08998 * 109.47080 * 65.00037 * 5 3 2 35 35 H 1.09004 * 109.47144 * 304.99953 * 5 3 2 36 36 H 0.97006 * 119.99706 * 359.97438 * 6 5 3 37 37 H 1.07999 * 127.24999 * 0.02562 * 10 9 7 38 38 H 1.08004 * 126.38286 * 179.86285 * 11 10 9 39 39 H 1.08997 * 109.47008 * 244.99589 * 13 12 11 40 40 H 1.09001 * 109.47099 * 4.99786 * 13 12 11 41 41 H 1.09007 * 109.46620 * 299.99622 * 14 13 12 42 42 H 1.08992 * 109.47452 * 59.99360 * 14 13 12 43 43 H 1.08996 * 109.46699 * 180.02562 * 14 13 12 44 44 H 1.00903 * 110.99880 * 189.48061 * 16 3 2 45 45 H 1.08994 * 109.47234 * 302.18459 * 17 16 3 46 46 H 1.09007 * 109.46669 * 62.18139 * 17 16 3 47 47 H 0.96999 * 119.99687 * 0.02562 * 20 18 17 48 48 H 0.97004 * 119.99719 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6340 1.9714 -0.8622 5 6 3.5683 1.4430 -0.0746 6 7 4.0625 2.8169 0.0455 7 6 5.3871 3.0624 0.0060 8 8 6.1719 2.1437 -0.1288 9 6 5.8855 4.4475 0.1277 10 6 7.2384 4.8613 0.0982 11 6 7.2086 6.2064 0.2477 12 7 5.9119 6.5688 0.3506 13 6 5.4373 7.9444 0.5201 14 6 4.4321 8.2768 -0.5845 15 7 5.1544 5.5338 0.2789 16 7 1.6099 2.1139 1.2337 17 6 2.2441 1.5076 2.4118 18 6 1.7389 2.1857 3.6592 19 8 0.9298 3.0854 3.5751 20 7 2.1854 1.7920 4.8683 21 6 1.7263 2.4093 6.0030 22 1 1.0065 3.2109 5.9280 23 6 2.1863 2.0029 7.2496 24 7 3.0618 1.0272 7.3408 25 14 1.5601 2.8436 8.7958 26 1 0.3502 2.1371 9.2879 27 1 2.6144 2.8065 9.8409 28 1 1.2180 4.2554 8.4877 29 1 -0.3633 -1.0234 -0.0935 30 1 -0.3632 0.4307 0.9331 31 1 -0.3632 0.5927 -0.8395 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8856 1.0250 -1.0300 35 1 3.9720 0.8393 0.7382 36 1 3.4363 3.5499 0.1528 37 1 8.1111 4.2356 -0.0173 38 1 8.0626 6.8670 0.2751 39 1 4.9552 8.0453 1.4924 40 1 6.2824 8.6303 0.4606 41 1 4.9143 8.1760 -1.5569 42 1 3.5871 7.5910 -0.5252 43 1 4.0793 9.3004 -0.4587 44 1 1.7984 3.1043 1.1909 45 1 1.9989 0.4462 2.4506 46 1 3.3253 1.6285 2.3450 47 1 2.8322 1.0722 4.9356 48 1 3.3831 0.7437 8.2111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495069124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:04 Heat of formation + Delta-G solvation = 5.063737 kcal Electronic energy + Delta-G solvation = -29452.161482 eV Core-core repulsion = 25350.908601 eV Total energy + Delta-G solvation = -4101.252881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.78994 -39.70089 -38.41746 -37.16604 -34.82078 -34.02937 -33.80585 -31.90347 -31.14403 -30.92957 -30.31557 -28.50421 -26.55595 -25.09869 -24.17251 -23.32293 -22.03252 -21.54356 -20.37179 -19.81479 -19.01763 -18.09331 -17.86269 -16.89895 -16.73167 -16.20112 -15.82663 -15.42987 -15.15835 -14.74039 -14.44041 -14.31812 -14.18568 -14.00618 -13.78252 -13.63675 -13.41087 -13.25582 -13.11960 -12.72895 -12.57543 -12.49516 -12.10335 -11.85473 -11.79146 -11.60397 -11.42066 -11.24592 -11.01099 -10.98129 -10.81126 -10.51836 -10.37433 -10.18011 -10.13999 -9.46750 -9.43455 -9.24032 -9.03155 -8.43573 -8.02805 -7.91356 -6.37489 -3.78218 1.50649 2.00984 2.23205 3.12432 3.19890 3.27983 3.33670 3.43150 3.96283 4.05736 4.14023 4.37652 4.49487 4.56987 4.59111 4.72641 4.77729 4.92637 5.05869 5.18820 5.22541 5.25638 5.31292 5.36652 5.42829 5.50878 5.58225 5.60697 5.68903 5.71493 5.84034 5.86966 5.97832 6.06050 6.13631 6.24125 6.28462 6.36566 6.38393 6.58108 6.59950 7.21051 7.39109 7.58652 7.62272 7.78943 8.10390 8.20190 8.65929 9.22050 9.59367 10.10995 10.80337 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007451 B = 0.003496 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.901337 B = 8008.373594 C =10135.984658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.089 0.911 5 C 0.080 3.920 6 N -0.716 5.716 7 C 0.607 3.393 8 O -0.534 6.534 9 C -0.020 4.020 10 C -0.179 4.179 11 C -0.021 4.021 12 N -0.280 5.280 13 C 0.115 3.885 14 C -0.167 4.167 15 N -0.254 5.254 16 N -0.652 5.652 17 C 0.043 3.957 18 C 0.443 3.557 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.405 0.595 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.346 0.654 45 H 0.089 0.911 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.578 9.022 -18.096 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.034 4.034 4 H 0.107 0.893 5 C -0.046 4.046 6 N -0.368 5.368 7 C 0.392 3.608 8 O -0.409 6.409 9 C -0.180 4.180 10 C -0.207 4.207 11 C -0.164 4.164 12 N -0.069 5.069 13 C -0.005 4.005 14 C -0.225 4.225 15 N -0.090 5.090 16 N -0.284 5.284 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.241 0.759 37 H 0.179 0.821 38 H 0.198 0.802 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.166 0.834 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.947 9.005 -17.894 20.634 hybrid contribution 1.765 0.421 0.898 2.025 sum 6.712 9.426 -16.996 20.561 Atomic orbital electron populations 1.21614 0.94639 1.00512 1.03087 1.21502 0.97316 0.94287 1.02006 1.21983 0.90281 0.97208 0.93978 0.89327 1.22243 0.96583 0.82887 1.02853 1.45794 1.06988 1.10025 1.74029 1.16854 0.82139 0.85690 0.76142 1.90789 1.55915 1.44253 1.49941 1.21900 0.92585 0.92638 1.10850 1.21764 0.97128 0.93824 1.07965 1.22869 0.88273 0.96804 1.08437 1.45633 1.04209 1.07043 1.49984 1.22052 1.00115 0.76416 1.01914 1.22075 0.99623 1.03102 0.97693 1.73466 1.23959 0.93340 1.18243 1.60231 1.60756 1.07541 0.99901 1.21773 0.96670 0.99959 0.90503 1.19805 0.86051 0.86975 0.84328 1.90513 1.36720 1.32997 1.86538 1.41855 1.39849 1.33762 1.04623 1.19684 1.23428 1.16529 0.83166 0.87998 1.25251 0.96615 0.96764 0.99318 1.69620 1.30817 1.28019 1.25817 0.85876 0.78200 0.79630 0.80677 1.20390 1.20975 1.19499 0.93574 0.91027 0.93223 0.91791 0.91434 0.90967 0.90645 0.75929 0.82095 0.80155 0.88525 0.87881 0.91980 0.90540 0.90166 0.83439 0.89306 0.93500 0.77517 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.72 37.16 0.36 -1.30 16 2 C -0.11 -1.27 5.28 -26.73 -0.14 -1.41 16 3 C 0.08 0.92 2.73 -67.72 -0.18 0.73 16 4 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.08 1.01 4.47 -4.04 -0.02 0.99 16 6 N -0.72 -9.73 5.31 -61.30 -0.33 -10.06 16 7 C 0.61 9.50 7.82 -12.39 -0.10 9.41 16 8 O -0.53 -9.71 16.93 5.30 0.09 -9.62 16 9 C -0.02 -0.28 7.13 -82.76 -0.59 -0.87 16 10 C -0.18 -2.17 10.81 -39.36 -0.43 -2.59 16 11 C -0.02 -0.20 11.40 -17.17 -0.20 -0.40 16 12 N -0.28 -2.87 3.41 -61.33 -0.21 -3.08 16 13 C 0.11 0.73 7.12 -4.04 -0.03 0.70 16 14 C -0.17 -1.00 10.02 37.16 0.37 -0.63 16 15 N -0.25 -3.36 11.36 33.42 0.38 -2.98 16 16 N -0.65 -10.14 5.37 -108.00 -0.58 -10.72 16 17 C 0.04 0.78 5.32 -4.98 -0.03 0.75 16 18 C 0.44 10.64 7.82 -10.99 -0.09 10.55 16 19 O -0.58 -15.89 15.83 5.55 0.09 -15.80 16 20 N -0.56 -14.68 5.29 -10.97 -0.06 -14.74 16 21 C -0.30 -8.49 9.68 -14.94 -0.14 -8.63 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -25.09 13.05 55.50 0.72 -24.37 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.07 6.69 -51.93 -0.35 0.72 16 36 H 0.40 5.25 6.96 -40.82 -0.28 4.96 16 37 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.33 8.04 -51.93 -0.42 -0.09 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.35 5.57 7.24 -39.29 -0.28 5.29 16 45 H 0.09 1.50 6.30 -51.93 -0.33 1.17 16 46 H 0.05 0.83 6.41 -51.92 -0.33 0.50 16 47 H 0.39 9.89 7.90 -40.82 -0.32 9.56 16 48 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -35.36 400.78 -7.39 -42.75 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -7.21 Total: 18.40 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.30 Total: 7.80 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -0.07 Total: -65.94 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.18 Total: -25.43 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.36 -7.39 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495069124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.812 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds