Wall clock time and date at job start Tue Mar 31 2020 20:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47483 * 2 1 4 4 H 1.08997 * 109.47021 * 302.96936 * 3 2 1 5 5 C 1.53000 * 109.47304 * 182.96589 * 3 2 1 6 6 N 1.46499 * 109.47077 * 185.00095 * 5 3 2 7 7 C 1.34773 * 120.00079 * 180.02562 * 6 5 3 8 8 O 1.21573 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.47705 * 120.00238 * 180.02562 * 7 6 5 10 10 C 1.41511 * 126.51912 * 180.32255 * 9 7 6 11 11 C 1.35364 * 105.49944 * 180.14088 * 10 9 7 12 12 N 1.35033 * 107.23236 * 359.60825 * 11 10 9 13 13 C 1.46504 * 124.88501 * 180.24073 * 12 11 10 14 14 C 1.53004 * 109.47005 * 124.99706 * 13 12 11 15 15 N 1.28466 * 110.22825 * 0.25484 * 12 11 10 16 16 N 1.46898 * 109.46905 * 62.96571 * 3 2 1 17 17 C 1.46901 * 111.00326 * 65.52305 * 16 3 2 18 18 C 1.50696 * 109.47419 * 182.17867 * 17 16 3 19 19 O 1.21293 * 120.00059 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00289 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00362 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99829 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00226 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00112 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46935 * 90.00608 * 25 23 21 27 27 H 1.48497 * 109.47045 * 210.00443 * 25 23 21 28 28 H 1.48494 * 109.47136 * 330.00429 * 25 23 21 29 29 H 1.08996 * 109.47099 * 174.77986 * 1 2 3 30 30 H 1.09002 * 109.46485 * 294.77855 * 1 2 3 31 31 H 1.08994 * 109.46743 * 54.77647 * 1 2 3 32 32 H 1.09006 * 109.47042 * 239.99684 * 2 1 3 33 33 H 1.09004 * 109.46935 * 120.00346 * 2 1 3 34 34 H 1.08998 * 109.47080 * 65.00037 * 5 3 2 35 35 H 1.09004 * 109.47144 * 304.99953 * 5 3 2 36 36 H 0.97006 * 119.99706 * 359.97438 * 6 5 3 37 37 H 1.07999 * 127.24999 * 0.02562 * 10 9 7 38 38 H 1.08004 * 126.38286 * 179.86285 * 11 10 9 39 39 H 1.08997 * 109.47008 * 244.99589 * 13 12 11 40 40 H 1.09001 * 109.47099 * 4.99786 * 13 12 11 41 41 H 1.09007 * 109.46620 * 299.99622 * 14 13 12 42 42 H 1.08992 * 109.47452 * 59.99360 * 14 13 12 43 43 H 1.08996 * 109.46699 * 180.02562 * 14 13 12 44 44 H 1.00903 * 110.99880 * 189.48061 * 16 3 2 45 45 H 1.08994 * 109.47234 * 302.18459 * 17 16 3 46 46 H 1.09007 * 109.46669 * 62.18139 * 17 16 3 47 47 H 0.96999 * 119.99687 * 0.02562 * 20 18 17 48 48 H 0.97004 * 119.99719 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6340 1.9714 -0.8622 5 6 3.5683 1.4430 -0.0746 6 7 4.0625 2.8169 0.0455 7 6 5.3871 3.0624 0.0060 8 8 6.1719 2.1437 -0.1288 9 6 5.8855 4.4475 0.1277 10 6 7.2384 4.8613 0.0982 11 6 7.2086 6.2064 0.2477 12 7 5.9119 6.5688 0.3506 13 6 5.4373 7.9444 0.5201 14 6 4.4321 8.2768 -0.5845 15 7 5.1544 5.5338 0.2789 16 7 1.6099 2.1139 1.2337 17 6 2.2441 1.5076 2.4118 18 6 1.7389 2.1857 3.6592 19 8 0.9298 3.0854 3.5751 20 7 2.1854 1.7920 4.8683 21 6 1.7263 2.4093 6.0030 22 1 1.0065 3.2109 5.9280 23 6 2.1863 2.0029 7.2496 24 7 3.0618 1.0272 7.3408 25 14 1.5601 2.8436 8.7958 26 1 0.3502 2.1371 9.2879 27 1 2.6144 2.8065 9.8409 28 1 1.2180 4.2554 8.4877 29 1 -0.3633 -1.0234 -0.0935 30 1 -0.3632 0.4307 0.9331 31 1 -0.3632 0.5927 -0.8395 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8856 1.0250 -1.0300 35 1 3.9720 0.8393 0.7382 36 1 3.4363 3.5499 0.1528 37 1 8.1111 4.2356 -0.0173 38 1 8.0626 6.8670 0.2751 39 1 4.9552 8.0453 1.4924 40 1 6.2824 8.6303 0.4606 41 1 4.9143 8.1760 -1.5569 42 1 3.5871 7.5910 -0.5252 43 1 4.0793 9.3004 -0.4587 44 1 1.7984 3.1043 1.1909 45 1 1.9989 0.4462 2.4506 46 1 3.3253 1.6285 2.3450 47 1 2.8322 1.0722 4.9356 48 1 3.3831 0.7437 8.2111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495069124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:03 Heat of formation + Delta-G solvation = -22.545807 kcal Electronic energy + Delta-G solvation = -29453.358722 eV Core-core repulsion = 25350.908601 eV Total energy + Delta-G solvation = -4102.450121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.63775 -40.92549 -40.10308 -38.59206 -35.97910 -35.50765 -35.05493 -33.36004 -32.99959 -31.79264 -31.09307 -29.65023 -28.10599 -26.26365 -25.74752 -24.18343 -22.91956 -22.37729 -21.74787 -20.96843 -20.51370 -19.87207 -18.98816 -18.33834 -17.71357 -17.15661 -17.04511 -16.88643 -16.56279 -16.17231 -15.89620 -15.57511 -15.35433 -15.23901 -15.11574 -14.64521 -14.56565 -14.35022 -14.11793 -13.95875 -13.75434 -13.48426 -13.31865 -13.12069 -12.99241 -12.88627 -12.67412 -12.42857 -12.35019 -12.28490 -12.13488 -11.86173 -11.80517 -11.54660 -11.49738 -11.32284 -10.40684 -10.35468 -10.17903 -10.02785 -9.99382 -9.39234 -8.47393 -5.96654 0.49127 1.18812 1.36705 1.39668 1.52874 1.53138 2.03321 2.08600 2.27993 2.32365 2.91496 3.19344 3.30555 3.49309 3.68862 3.85398 3.95170 4.02815 4.03315 4.18676 4.23917 4.29660 4.34757 4.38171 4.44971 4.56122 4.65450 4.68127 4.70873 4.76335 4.80132 4.86622 4.93410 4.99231 5.19566 5.20938 5.26134 5.36505 5.38819 5.39368 5.59127 5.85765 5.88967 6.06288 6.27889 6.34229 6.58057 6.85816 7.07644 7.11002 7.54290 8.09215 8.70252 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007451 B = 0.003496 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.901337 B = 8008.373594 C =10135.984658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.086 3.914 4 H 0.110 0.890 5 C 0.083 3.917 6 N -0.709 5.709 7 C 0.601 3.399 8 O -0.569 6.569 9 C -0.053 4.053 10 C -0.206 4.206 11 C 0.001 3.999 12 N -0.277 5.277 13 C 0.105 3.895 14 C -0.163 4.163 15 N -0.275 5.275 16 N -0.658 5.658 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.408 0.592 37 H 0.164 0.836 38 H 0.229 0.771 39 H 0.094 0.906 40 H 0.146 0.854 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.103 0.897 44 H 0.342 0.658 45 H 0.104 0.896 46 H 0.051 0.949 47 H 0.393 0.607 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 10.267 -18.671 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.024 4.024 4 H 0.128 0.872 5 C -0.042 4.042 6 N -0.361 5.361 7 C 0.387 3.613 8 O -0.447 6.447 9 C -0.212 4.212 10 C -0.234 4.234 11 C -0.142 4.142 12 N -0.066 5.066 13 C -0.013 4.013 14 C -0.221 4.221 15 N -0.113 5.113 16 N -0.289 5.289 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.244 0.756 37 H 0.181 0.819 38 H 0.246 0.754 39 H 0.112 0.888 40 H 0.164 0.836 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.122 0.878 44 H 0.161 0.839 45 H 0.122 0.878 46 H 0.069 0.931 47 H 0.227 0.773 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.538 10.238 -18.487 21.846 hybrid contribution 1.562 0.115 1.014 1.866 sum 7.100 10.353 -17.473 21.515 Atomic orbital electron populations 1.21565 0.94887 1.01247 1.01781 1.21537 0.96962 0.93586 1.02911 1.22073 0.89813 0.97818 0.92739 0.87225 1.22261 0.96730 0.82281 1.02931 1.45798 1.06585 1.10510 1.73208 1.17173 0.82359 0.86202 0.75575 1.90747 1.56712 1.45402 1.51873 1.21915 0.93881 0.92377 1.12993 1.22016 0.96433 0.95455 1.09490 1.23527 0.89008 0.96327 1.05365 1.46114 1.04581 1.07612 1.48319 1.22487 1.01977 0.75076 1.01793 1.22045 0.98634 1.03777 0.97625 1.73410 1.24853 0.93911 1.19091 1.60239 1.60844 1.07464 1.00400 1.21533 0.96591 1.00047 0.88675 1.20804 0.84847 0.86218 0.85407 1.90479 1.38138 1.34519 1.87277 1.41942 1.40243 1.34002 1.04974 1.19679 1.24503 1.17294 0.84824 0.90186 1.26076 0.96369 0.97110 1.01805 1.69692 1.31125 1.28578 1.26920 0.84916 0.78112 0.78391 0.76845 1.19496 1.19577 1.19617 0.92320 0.94196 0.92145 0.89044 0.92387 0.89643 0.92169 0.75596 0.81885 0.75445 0.88768 0.83641 0.92004 0.93165 0.87825 0.83919 0.87766 0.93095 0.77319 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.72 71.98 0.70 -2.34 16 2 C -0.11 -2.32 5.28 30.59 0.16 -2.16 16 3 C 0.09 1.95 2.73 44.91 0.12 2.07 16 4 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 5 C 0.08 2.06 4.47 86.38 0.39 2.44 16 6 N -0.71 -19.60 5.31 -466.11 -2.48 -22.07 16 7 C 0.60 19.44 7.82 86.75 0.68 20.12 16 8 O -0.57 -21.44 16.93 -3.94 -0.07 -21.51 16 9 C -0.05 -1.56 7.13 42.46 0.30 -1.26 16 10 C -0.21 -4.93 10.81 22.41 0.24 -4.69 16 11 C 0.00 0.01 11.40 83.54 0.95 0.96 16 12 N -0.28 -5.27 3.41 -347.93 -1.19 -6.46 16 13 C 0.10 1.09 7.12 86.38 0.61 1.70 16 14 C -0.16 -1.71 10.02 71.98 0.72 -0.99 16 15 N -0.27 -7.30 11.36 -48.17 -0.55 -7.85 16 16 N -0.66 -20.41 5.37 -495.59 -2.66 -23.07 16 17 C 0.06 2.33 5.32 85.56 0.46 2.78 16 18 C 0.44 21.71 7.82 87.66 0.69 22.40 16 19 O -0.62 -34.70 15.83 -3.07 -0.05 -34.75 16 20 N -0.57 -30.78 5.29 -307.00 -1.62 -32.41 16 21 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 22 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 24 N -0.92 -51.41 13.05 21.66 0.28 -51.13 16 25 Si 0.99 43.80 29.55 68.60 2.03 45.82 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 1.13 7.85 -2.39 -0.02 1.12 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.06 1.33 6.36 -2.38 -0.02 1.31 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.70 6.69 -2.39 -0.02 1.69 16 36 H 0.41 10.79 6.96 -92.70 -0.64 10.15 16 37 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 38 H 0.23 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.15 0.29 8.04 -2.39 -0.02 0.27 16 41 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 43 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.34 11.14 7.24 -89.69 -0.65 10.49 16 45 H 0.10 3.51 6.30 -2.39 -0.02 3.49 16 46 H 0.05 1.84 6.41 -2.38 -0.02 1.83 16 47 H 0.39 20.42 7.90 -92.71 -0.73 19.69 16 48 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -79.60 400.78 -0.02 -79.62 By element: Atomic # 1 Polarization: 52.74 SS G_CDS: -1.02 Total: 51.72 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 7.30 Total: 22.08 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -8.21 Total: -142.98 kcal Atomic # 8 Polarization: -56.14 SS G_CDS: -0.12 Total: -56.26 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -79.60 -0.02 -79.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495069124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.072 kcal (2) G-P(sol) polarization free energy of solvation -79.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds