Wall clock time and date at job start Tue Mar 31 2020 20:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47196 * 2 1 4 4 C 1.53000 * 109.46946 * 119.99977 * 2 1 3 5 5 H 1.09001 * 109.46929 * 184.99861 * 4 2 1 6 6 C 1.53000 * 109.47150 * 65.00214 * 4 2 1 7 7 N 1.46508 * 109.47059 * 184.99640 * 6 4 2 8 8 C 1.34774 * 120.00144 * 179.97438 * 7 6 4 9 9 O 1.21285 * 119.99831 * 0.02562 * 8 7 6 10 10 C 1.50695 * 120.00028 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.44500 * 60.06674 * 10 8 7 12 12 C 1.53124 * 109.44365 * 180.02562 * 10 8 7 13 13 C 1.53474 * 109.39167 * 189.76375 * 12 10 8 14 14 C 1.50804 * 108.08576 * 311.15593 * 13 12 10 15 15 N 1.29598 * 128.73162 * 195.94226 * 14 13 12 16 16 N 1.28878 * 109.79885 * 179.78046 * 15 14 13 17 17 C 1.31381 * 109.92458 * 0.02562 * 16 15 14 18 18 O 1.35535 * 126.57427 * 180.02562 * 17 16 15 19 19 N 1.35434 * 106.84586 * 0.06499 * 17 16 15 20 20 C 1.46204 * 129.14301 * 179.81808 * 19 17 16 21 21 N 1.46503 * 109.47351 * 304.99886 * 4 2 1 22 22 C 1.36939 * 119.99836 * 275.00493 * 21 4 2 23 23 H 1.07997 * 120.00194 * 359.97438 * 22 21 4 24 24 C 1.38816 * 119.99444 * 179.97438 * 22 21 4 25 25 N 1.31619 * 119.99617 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00264 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47241 * 89.99765 * 26 24 22 28 28 H 1.48503 * 109.46863 * 210.00111 * 26 24 22 29 29 H 1.48499 * 109.46958 * 329.99789 * 26 24 22 30 30 H 1.09002 * 109.47440 * 299.99782 * 1 2 3 31 31 H 1.08994 * 109.47129 * 60.00159 * 1 2 3 32 32 H 1.09007 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46881 * 239.99705 * 2 1 3 34 34 H 1.09002 * 109.47624 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47260 * 299.99893 * 3 2 1 36 36 H 1.09001 * 109.47219 * 59.99550 * 3 2 1 37 37 H 1.08993 * 109.47199 * 65.00066 * 6 4 2 38 38 H 1.08992 * 109.47103 * 304.99802 * 6 4 2 39 39 H 0.97003 * 119.99519 * 0.02562 * 7 6 4 40 40 H 1.09002 * 109.48611 * 309.74736 * 12 10 8 41 41 H 1.09002 * 109.48958 * 69.78777 * 12 10 8 42 42 H 1.09007 * 109.73358 * 70.78154 * 13 12 10 43 43 H 1.09000 * 109.74044 * 191.48086 * 13 12 10 44 44 H 0.96698 * 114.00105 * 269.99512 * 18 17 16 45 45 H 1.08998 * 109.60661 * 77.29289 * 20 19 17 46 46 H 1.08998 * 109.60199 * 316.79783 * 20 19 17 47 47 H 0.96997 * 119.99712 * 95.00216 * 21 4 2 48 48 H 0.96997 * 120.00165 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1263 -0.6444 1.2952 6 6 1.6352 -2.1955 1.1880 7 7 2.0184 -2.8594 2.4365 8 6 1.7588 -4.1705 2.6097 9 8 1.2084 -4.8009 1.7319 10 6 2.1524 -4.8533 3.8942 11 1 1.6457 -4.3723 4.7309 12 6 1.7472 -6.3286 3.8322 13 6 1.9223 -6.9638 5.2183 14 6 3.2931 -6.5996 5.7304 15 7 3.9630 -7.1322 6.7036 16 7 5.1009 -6.5394 6.8261 17 6 5.2099 -5.5892 5.9254 18 8 6.2665 -4.7583 5.7519 19 7 4.0636 -5.5986 5.2042 20 6 3.6699 -4.7434 4.0856 21 7 1.4558 -0.1036 2.4424 22 6 2.0441 1.0003 2.9997 23 1 2.9389 1.4153 2.5599 24 6 1.4903 1.5857 4.1299 25 7 2.0560 2.6464 4.6659 26 14 -0.0570 0.8673 4.8911 27 1 0.3170 -0.1506 5.9055 28 1 -0.8377 1.9505 5.5410 29 1 -0.8803 0.2310 3.8316 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 2.1408 -2.6765 0.3507 38 1 0.5564 -2.2707 1.0527 39 1 2.4583 -2.3551 3.1387 40 1 0.7042 -6.4066 3.5254 41 1 2.3781 -6.8490 3.1115 42 1 1.1615 -6.5797 5.8979 43 1 1.8339 -8.0475 5.1404 44 1 6.2127 -3.9409 6.2658 45 1 4.1775 -5.0709 3.1784 46 1 3.9370 -3.7095 4.3042 47 1 0.6524 -0.4767 2.8376 48 1 1.6688 3.0558 5.4554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496576413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:23 Heat of formation + Delta-G solvation = 9.532652 kcal Electronic energy + Delta-G solvation = -30311.936601 eV Core-core repulsion = 26210.877507 eV Total energy + Delta-G solvation = -4101.059095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.48439 -40.22557 -37.99789 -37.83728 -36.91264 -34.34033 -33.56336 -33.05097 -31.56410 -30.75285 -29.16184 -28.18889 -26.60427 -25.43022 -24.08345 -23.22186 -22.57833 -22.11664 -20.87420 -19.92941 -19.19943 -19.06088 -18.01439 -17.46849 -16.92914 -16.40443 -16.06037 -15.79836 -15.45296 -14.84954 -14.71295 -14.61996 -14.45132 -14.23011 -14.08359 -13.62915 -13.33042 -13.04038 -12.81579 -12.69896 -12.56425 -12.28042 -12.13165 -11.97889 -11.61847 -11.47277 -11.41127 -11.35270 -11.20172 -11.01527 -10.76896 -10.48183 -10.46175 -10.44688 -10.24458 -10.14986 -9.94029 -9.59371 -9.26140 -9.11349 -9.02596 -7.49106 -5.95772 -3.32471 1.31932 1.78849 2.40047 2.49251 3.02447 3.18524 3.23150 3.31269 3.45081 3.80067 3.98468 4.11041 4.23980 4.39856 4.60550 4.72526 4.80218 4.87788 5.02518 5.07104 5.09428 5.19087 5.28639 5.32900 5.50620 5.52033 5.58073 5.58917 5.60961 5.65074 5.73580 5.84826 5.89083 6.15395 6.18977 6.21438 6.31696 6.42987 6.48074 6.58159 6.65205 6.83471 7.04280 7.20370 7.46035 7.79472 8.08517 8.22257 8.39252 8.99778 9.71865 9.90878 11.21679 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.003460 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.381341 B = 8091.180226 C = 9009.761802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.173 3.827 5 H 0.063 0.937 6 C 0.107 3.893 7 N -0.713 5.713 8 C 0.519 3.481 9 O -0.537 6.537 10 C -0.125 4.125 11 H 0.113 0.887 12 C -0.106 4.106 13 C -0.033 4.033 14 C 0.191 3.809 15 N -0.276 5.276 16 N -0.289 5.289 17 C 0.356 3.644 18 O -0.436 6.436 19 N -0.480 5.480 20 C 0.116 3.884 21 N -0.743 5.743 22 C -0.244 4.244 23 H 0.095 0.905 24 C 0.010 3.990 25 N -0.928 5.928 26 Si 0.877 3.123 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.409 0.591 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.410 0.590 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.362 0.638 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -13.975 -3.483 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.200 4.200 4 C 0.063 3.937 5 H 0.081 0.919 6 C -0.017 4.017 7 N -0.365 5.365 8 C 0.303 3.697 9 O -0.414 6.414 10 C -0.147 4.147 11 H 0.131 0.869 12 C -0.145 4.145 13 C -0.073 4.073 14 C -0.076 4.076 15 N -0.117 5.117 16 N -0.140 5.140 17 C 0.051 3.949 18 O -0.236 6.236 19 N -0.184 5.184 20 C -0.007 4.007 21 N -0.387 5.387 22 C -0.374 4.374 23 H 0.113 0.887 24 C -0.186 4.186 25 N -0.575 5.575 26 Si 0.707 3.293 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.116 0.884 46 H 0.123 0.877 47 H 0.195 0.805 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.954 -15.392 -3.310 15.772 hybrid contribution -1.213 1.504 0.143 1.937 sum -0.259 -13.888 -3.167 14.247 Atomic orbital electron populations 1.21793 0.95906 1.00518 1.01736 1.21586 0.95940 0.97577 0.97694 1.21848 0.99888 0.95860 1.02407 1.20535 0.97407 0.87970 0.87785 0.91917 1.21860 1.00830 0.93595 0.85374 1.46100 1.60655 1.09291 1.20408 1.19988 0.79497 0.82360 0.87832 1.90717 1.42509 1.64912 1.43292 1.21727 0.94966 0.99147 0.98861 0.86906 1.21558 1.04915 0.91855 0.96130 1.20343 0.87457 1.03162 0.96309 1.24689 0.97174 0.90618 0.95127 1.74017 0.99601 1.22511 1.15615 1.74865 1.12751 1.07972 1.18397 1.21850 0.83475 0.96913 0.92641 1.84907 1.34733 1.33928 1.69992 1.46605 1.14619 1.28802 1.28347 1.21936 0.95007 0.95435 0.88342 1.42815 1.31271 1.34420 1.30174 1.19037 1.08377 1.02932 1.07023 0.88726 1.24648 0.98262 0.97506 0.98222 1.69678 1.41299 1.22600 1.23949 0.86696 0.84695 0.78537 0.79363 1.21321 1.21744 1.20316 0.91572 0.93941 0.93786 0.92871 0.93884 0.94760 0.89257 0.91258 0.91198 0.75432 0.88207 0.90232 0.88091 0.87391 0.73218 0.88351 0.87692 0.80529 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.74 37.16 0.32 -1.78 16 2 C -0.11 -1.57 2.74 -90.62 -0.25 -1.82 16 3 C -0.14 -2.34 8.46 37.15 0.31 -2.03 16 4 C 0.17 2.63 2.28 -67.93 -0.16 2.48 16 5 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 6 C 0.11 1.43 5.10 -4.04 -0.02 1.41 16 7 N -0.71 -8.64 5.29 -60.30 -0.32 -8.96 16 8 C 0.52 6.10 7.14 -10.99 -0.08 6.02 16 9 O -0.54 -7.93 15.82 5.55 0.09 -7.84 16 10 C -0.13 -1.11 2.53 -91.53 -0.23 -1.35 16 11 H 0.11 0.94 8.12 -51.93 -0.42 0.52 16 12 C -0.11 -0.86 4.68 -26.42 -0.12 -0.98 16 13 C -0.03 -0.25 6.34 -27.59 -0.17 -0.43 16 14 C 0.19 2.15 7.78 -154.44 -1.20 0.95 16 15 N -0.28 -3.92 12.17 32.93 0.40 -3.52 16 16 N -0.29 -4.30 12.24 29.53 0.36 -3.93 16 17 C 0.36 4.38 9.30 -89.28 -0.83 3.55 16 18 O -0.44 -4.29 13.64 -18.30 -0.25 -4.54 16 19 N -0.48 -5.15 3.16 -115.37 -0.36 -5.51 16 20 C 0.12 1.00 6.16 -4.02 -0.02 0.98 16 21 N -0.74 -13.98 3.33 -53.42 -0.18 -14.15 16 22 C -0.24 -5.71 8.23 -15.06 -0.12 -5.83 16 23 H 0.10 2.42 7.55 -52.49 -0.40 2.02 16 24 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 25 N -0.93 -26.39 13.97 55.49 0.78 -25.61 16 26 Si 0.88 19.80 27.74 -169.99 -4.71 15.09 16 27 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.28 -5.94 6.52 56.52 0.37 -5.57 16 30 H 0.07 1.14 7.47 -51.93 -0.39 0.75 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.60 6.46 -51.93 -0.34 0.26 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.79 5.99 -51.93 -0.31 1.47 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.99 6.34 -51.93 -0.33 0.67 16 39 H 0.41 4.89 7.77 -40.82 -0.32 4.57 16 40 H 0.10 0.81 7.78 -51.93 -0.40 0.40 16 41 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.41 2.07 9.06 45.56 0.41 2.48 16 45 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 46 H 0.10 0.79 7.86 -51.93 -0.41 0.38 16 47 H 0.36 6.98 5.66 -40.82 -0.23 6.75 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -32.32 382.77 -7.62 -39.94 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.52 Total: 11.95 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.67 Total: 1.33 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.68 Total: -61.69 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.16 Total: -12.38 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.71 Total: 15.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.32 -7.62 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496576413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.473 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds