Wall clock time and date at job start Tue Mar 31 2020 20:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46588 * 2 1 4 4 C 1.52997 * 109.47336 * 119.99969 * 2 1 3 5 5 H 1.08995 * 109.47292 * 54.29820 * 4 2 1 6 6 C 1.53005 * 109.47100 * 294.29879 * 4 2 1 7 7 N 1.46504 * 109.47011 * 184.99771 * 6 4 2 8 8 C 1.34773 * 119.99691 * 180.02562 * 7 6 4 9 9 O 1.21577 * 120.00268 * 359.97438 * 8 7 6 10 10 C 1.47715 * 119.99933 * 179.72707 * 8 7 6 11 11 C 1.41493 * 126.51773 * 179.97438 * 10 8 7 12 12 C 1.35368 * 105.50443 * 179.90071 * 11 10 8 13 13 N 1.35035 * 107.22516 * 0.35749 * 12 11 10 14 14 C 1.46498 * 124.88765 * 179.73242 * 13 12 11 15 15 N 1.28471 * 110.23118 * 359.76070 * 13 12 11 16 16 N 1.46904 * 109.47334 * 174.30220 * 4 2 1 17 17 C 1.46897 * 110.99455 * 279.27992 * 16 4 2 18 18 C 1.50704 * 109.46953 * 185.16826 * 17 16 4 19 19 O 1.21298 * 119.99761 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00601 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00463 * 180.02562 * 20 18 17 22 22 H 1.07992 * 119.99924 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00193 * 180.02562 * 21 20 18 24 24 N 1.31422 * 119.99859 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00128 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47207 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47307 * 120.00120 * 25 23 21 28 28 H 1.48501 * 109.47197 * 239.99427 * 25 23 21 29 29 H 1.08996 * 109.47297 * 305.14477 * 1 2 3 30 30 H 1.09005 * 109.47166 * 65.14866 * 1 2 3 31 31 H 1.09002 * 109.46764 * 185.14691 * 1 2 3 32 32 H 1.08997 * 109.47689 * 240.00464 * 2 1 3 33 33 H 1.08992 * 109.47699 * 294.76578 * 3 2 1 34 34 H 1.08999 * 109.46876 * 54.77228 * 3 2 1 35 35 H 1.09004 * 109.46446 * 174.76449 * 3 2 1 36 36 H 1.09003 * 109.46895 * 65.00254 * 6 4 2 37 37 H 1.08999 * 109.47286 * 304.99940 * 6 4 2 38 38 H 0.96996 * 119.99737 * 0.02562 * 7 6 4 39 39 H 1.08001 * 127.25464 * 359.97438 * 11 10 8 40 40 H 1.07999 * 126.39333 * 180.12186 * 12 11 10 41 41 H 1.09005 * 109.46705 * 270.01661 * 14 13 12 42 42 H 1.08996 * 109.46966 * 30.00762 * 14 13 12 43 43 H 1.08998 * 109.47703 * 150.01521 * 14 13 12 44 44 H 1.00900 * 110.99980 * 43.23137 * 16 4 2 45 45 H 1.08996 * 109.47443 * 305.16414 * 17 16 4 46 46 H 1.08993 * 109.47478 * 65.17066 * 17 16 4 47 47 H 0.97009 * 119.99385 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99814 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5958 -1.7151 1.3018 6 6 1.6504 0.0780 2.4944 7 7 2.2399 -0.5478 3.6806 8 6 2.0293 -0.0130 4.8996 9 8 1.3505 0.9891 5.0148 10 6 2.6186 -0.6474 6.0963 11 6 2.4879 -0.2057 7.4342 12 6 3.1894 -1.0927 8.1783 13 7 3.7123 -2.0024 7.3284 14 6 4.5491 -3.1371 7.7265 15 7 3.3710 -1.7294 6.1203 16 7 3.5026 -0.8414 1.1824 17 6 3.8996 -1.9691 0.3288 18 6 5.3959 -2.1395 0.3853 19 8 6.0657 -1.3944 1.0691 20 7 5.9899 -3.1197 -0.3238 21 6 7.3510 -3.2750 -0.2719 22 1 7.9473 -2.6116 0.3368 23 6 7.9634 -4.2852 -1.0034 24 7 7.2377 -5.0921 -1.7447 25 14 9.8181 -4.4963 -0.9333 26 1 10.3997 -3.4679 -0.0338 27 1 10.1430 -5.8493 -0.4146 28 1 10.3860 -4.3394 -2.2964 29 1 -0.3634 0.5915 0.8403 30 1 -0.3634 0.4319 -0.9325 31 1 -0.3633 -1.0236 0.0922 32 1 1.8934 -0.5137 -0.8900 33 1 1.7551 1.9287 -0.9330 34 1 1.6020 1.9827 0.8395 35 1 3.1259 1.4440 0.0938 36 1 0.5649 0.0917 2.5923 37 1 2.0197 1.0993 2.4009 38 1 2.7817 -1.3471 3.5886 39 1 1.9422 0.6567 7.7876 40 1 3.3116 -1.0739 9.2512 41 1 5.5968 -2.8360 7.7191 42 1 4.2708 -3.4594 8.7298 43 1 4.4026 -3.9599 7.0267 44 1 3.9219 0.0189 0.8631 45 1 3.4166 -2.8801 0.6823 46 1 3.5950 -1.7717 -0.6989 47 1 5.4542 -3.7153 -0.8709 48 1 7.6652 -5.7975 -2.2551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496643738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:24 Heat of formation + Delta-G solvation = 4.209667 kcal Electronic energy + Delta-G solvation = -29220.460709 eV Core-core repulsion = 25119.170792 eV Total energy + Delta-G solvation = -4101.289917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.66811 -39.55763 -38.51566 -37.58051 -34.10708 -34.00098 -33.50757 -33.02071 -31.19022 -30.83918 -28.89261 -27.48902 -27.33195 -25.97128 -24.18854 -23.26545 -22.42870 -21.54223 -20.02080 -19.34764 -19.26635 -17.93527 -17.77322 -16.58896 -16.47278 -16.36736 -15.78132 -15.32613 -15.16610 -14.64091 -14.40999 -14.39012 -14.04154 -13.86615 -13.82149 -13.70213 -13.31767 -13.13308 -13.02229 -12.81880 -12.74861 -12.33625 -12.22653 -11.95679 -11.84425 -11.53702 -11.49417 -11.17794 -11.01087 -10.92939 -10.86336 -10.53571 -10.34739 -10.21872 -10.01823 -9.50995 -9.35275 -9.15679 -8.78049 -8.47706 -8.01694 -7.94371 -6.41349 -3.81819 1.61676 2.07321 2.36875 3.15810 3.26290 3.33487 3.35197 3.56234 3.92748 4.08003 4.25149 4.32671 4.64518 4.69091 4.72413 4.84399 4.89091 4.94308 5.15193 5.17210 5.18345 5.25811 5.27190 5.32946 5.49625 5.56836 5.57991 5.66511 5.74044 5.78969 5.80919 5.84892 5.94031 5.97264 6.01874 6.17498 6.24906 6.29944 6.31992 6.61302 6.65450 7.18993 7.55825 7.64113 7.64909 7.94688 8.07530 8.39623 8.62651 9.19150 9.55786 10.07752 10.76570 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007873 B = 0.003258 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.483352 B = 8591.649779 C =11602.864301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.155 4.155 4 C 0.077 3.923 5 H 0.085 0.915 6 C 0.130 3.870 7 N -0.698 5.698 8 C 0.602 3.398 9 O -0.548 6.548 10 C -0.017 4.017 11 C -0.181 4.181 12 C -0.024 4.024 13 N -0.285 5.285 14 C 0.085 3.915 15 N -0.251 5.251 16 N -0.661 5.661 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.580 6.580 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.416 0.584 39 H 0.161 0.839 40 H 0.181 0.819 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.351 0.649 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.067 4.499 13.122 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.212 4.212 4 C -0.034 4.034 5 H 0.104 0.896 6 C 0.006 3.994 7 N -0.349 5.349 8 C 0.387 3.613 9 O -0.424 6.424 10 C -0.177 4.177 11 C -0.210 4.210 12 C -0.167 4.167 13 N -0.073 5.073 14 C -0.055 4.055 15 N -0.088 5.088 16 N -0.294 5.294 17 C -0.083 4.083 18 C 0.228 3.772 19 O -0.463 6.463 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.755 3.245 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.253 0.747 39 H 0.178 0.822 40 H 0.198 0.802 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.173 0.827 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.397 4.273 13.460 18.792 hybrid contribution 0.466 -0.132 -0.780 0.918 sum -11.931 4.140 12.681 17.897 Atomic orbital electron populations 1.21851 0.94733 1.01895 1.01937 1.21782 0.96637 0.97223 0.98976 1.21955 1.01482 0.95688 1.02071 1.21940 0.89244 0.99243 0.93000 0.89637 1.21480 0.97510 0.97229 0.83183 1.45687 1.52567 1.31523 1.05106 1.16870 0.79722 0.83056 0.81680 1.90758 1.40300 1.25164 1.86194 1.21968 1.03894 0.96560 0.95303 1.21756 1.05264 1.02596 0.91341 1.22844 1.02342 0.93342 0.98133 1.45448 1.36594 1.21791 1.03474 1.22202 0.94478 0.86570 1.02235 1.73634 1.14405 1.16876 1.03860 1.60184 1.05574 1.08180 1.55418 1.21708 0.96010 0.95178 0.95411 1.19820 0.88550 0.84329 0.84538 1.90539 1.65210 1.46621 1.43963 1.41867 1.08067 1.28678 1.41662 1.19738 0.82297 1.14279 1.26324 0.87940 1.25247 1.00446 0.95963 0.96346 1.69624 1.36170 1.18967 1.29665 0.85820 0.82399 0.78209 0.78040 1.19253 1.20780 1.20798 0.92248 0.92713 0.92563 0.90568 0.92528 0.91907 0.92216 0.91110 0.90968 0.74656 0.82167 0.80222 0.89491 0.88728 0.88294 0.82682 0.89641 0.93733 0.77536 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 2 C -0.13 -1.30 2.77 -90.62 -0.25 -1.55 16 3 C -0.15 -1.61 8.41 37.16 0.31 -1.30 16 4 C 0.08 0.92 1.95 -67.71 -0.13 0.79 16 5 H 0.09 0.98 7.79 -51.93 -0.40 0.58 16 6 C 0.13 1.65 4.67 -4.04 -0.02 1.64 16 7 N -0.70 -10.17 5.39 -61.28 -0.33 -10.50 16 8 C 0.60 9.63 7.83 -12.39 -0.10 9.54 16 9 O -0.55 -9.83 16.93 5.30 0.09 -9.74 16 10 C -0.02 -0.25 7.13 -82.77 -0.59 -0.84 16 11 C -0.18 -2.21 10.81 -39.37 -0.43 -2.63 16 12 C -0.02 -0.23 11.46 -17.17 -0.20 -0.43 16 13 N -0.28 -3.10 3.70 -68.13 -0.25 -3.35 16 14 C 0.09 0.55 11.31 59.85 0.68 1.23 16 15 N -0.25 -3.61 11.67 33.42 0.39 -3.23 16 16 N -0.66 -10.18 5.21 -107.99 -0.56 -10.74 16 17 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 18 C 0.44 10.27 7.83 -10.98 -0.09 10.18 16 19 O -0.58 -15.64 15.89 5.54 0.09 -15.56 16 20 N -0.57 -14.18 5.29 -10.97 -0.06 -14.23 16 21 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 24 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 25 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.06 0.51 6.96 -51.93 -0.36 0.15 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.84 7.15 -51.93 -0.37 0.47 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.64 6.55 -51.93 -0.34 0.30 16 35 H 0.06 0.69 6.31 -51.93 -0.33 0.37 16 36 H 0.07 0.84 6.95 -51.93 -0.36 0.48 16 37 H 0.07 0.97 6.17 -51.93 -0.32 0.65 16 38 H 0.42 6.34 7.86 -40.82 -0.32 6.02 16 39 H 0.16 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.35 5.73 6.49 -39.29 -0.26 5.47 16 45 H 0.09 1.33 7.94 -51.93 -0.41 0.91 16 46 H 0.04 0.68 7.22 -51.93 -0.37 0.31 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -35.08 397.84 -6.75 -41.83 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -7.06 Total: 18.73 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -0.75 Total: 8.54 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.09 Total: -65.77 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.18 Total: -25.29 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.08 -6.75 -41.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496643738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.040 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds