Wall clock time and date at job start Tue Mar 31 2020 20:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46588 * 2 1 4 4 C 1.52997 * 109.47336 * 119.99969 * 2 1 3 5 5 H 1.08995 * 109.47292 * 54.29820 * 4 2 1 6 6 C 1.53005 * 109.47100 * 294.29879 * 4 2 1 7 7 N 1.46504 * 109.47011 * 184.99771 * 6 4 2 8 8 C 1.34773 * 119.99691 * 180.02562 * 7 6 4 9 9 O 1.21577 * 120.00268 * 359.97438 * 8 7 6 10 10 C 1.47715 * 119.99933 * 179.72707 * 8 7 6 11 11 C 1.41493 * 126.51773 * 179.97438 * 10 8 7 12 12 C 1.35368 * 105.50443 * 179.90071 * 11 10 8 13 13 N 1.35035 * 107.22516 * 0.35749 * 12 11 10 14 14 C 1.46498 * 124.88765 * 179.73242 * 13 12 11 15 15 N 1.28471 * 110.23118 * 359.76070 * 13 12 11 16 16 N 1.46904 * 109.47334 * 174.30220 * 4 2 1 17 17 C 1.46897 * 110.99455 * 279.27992 * 16 4 2 18 18 C 1.50704 * 109.46953 * 185.16826 * 17 16 4 19 19 O 1.21298 * 119.99761 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00601 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00463 * 180.02562 * 20 18 17 22 22 H 1.07992 * 119.99924 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00193 * 180.02562 * 21 20 18 24 24 N 1.31422 * 119.99859 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00128 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47207 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47307 * 120.00120 * 25 23 21 28 28 H 1.48501 * 109.47197 * 239.99427 * 25 23 21 29 29 H 1.08996 * 109.47297 * 305.14477 * 1 2 3 30 30 H 1.09005 * 109.47166 * 65.14866 * 1 2 3 31 31 H 1.09002 * 109.46764 * 185.14691 * 1 2 3 32 32 H 1.08997 * 109.47689 * 240.00464 * 2 1 3 33 33 H 1.08992 * 109.47699 * 294.76578 * 3 2 1 34 34 H 1.08999 * 109.46876 * 54.77228 * 3 2 1 35 35 H 1.09004 * 109.46446 * 174.76449 * 3 2 1 36 36 H 1.09003 * 109.46895 * 65.00254 * 6 4 2 37 37 H 1.08999 * 109.47286 * 304.99940 * 6 4 2 38 38 H 0.96996 * 119.99737 * 0.02562 * 7 6 4 39 39 H 1.08001 * 127.25464 * 359.97438 * 11 10 8 40 40 H 1.07999 * 126.39333 * 180.12186 * 12 11 10 41 41 H 1.09005 * 109.46705 * 270.01661 * 14 13 12 42 42 H 1.08996 * 109.46966 * 30.00762 * 14 13 12 43 43 H 1.08998 * 109.47703 * 150.01521 * 14 13 12 44 44 H 1.00900 * 110.99980 * 43.23137 * 16 4 2 45 45 H 1.08996 * 109.47443 * 305.16414 * 17 16 4 46 46 H 1.08993 * 109.47478 * 65.17066 * 17 16 4 47 47 H 0.97009 * 119.99385 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99814 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5958 -1.7151 1.3018 6 6 1.6504 0.0780 2.4944 7 7 2.2399 -0.5478 3.6806 8 6 2.0293 -0.0130 4.8996 9 8 1.3505 0.9891 5.0148 10 6 2.6186 -0.6474 6.0963 11 6 2.4879 -0.2057 7.4342 12 6 3.1894 -1.0927 8.1783 13 7 3.7123 -2.0024 7.3284 14 6 4.5491 -3.1371 7.7265 15 7 3.3710 -1.7294 6.1203 16 7 3.5026 -0.8414 1.1824 17 6 3.8996 -1.9691 0.3288 18 6 5.3959 -2.1395 0.3853 19 8 6.0657 -1.3944 1.0691 20 7 5.9899 -3.1197 -0.3238 21 6 7.3510 -3.2750 -0.2719 22 1 7.9473 -2.6116 0.3368 23 6 7.9634 -4.2852 -1.0034 24 7 7.2377 -5.0921 -1.7447 25 14 9.8181 -4.4963 -0.9333 26 1 10.3997 -3.4679 -0.0338 27 1 10.1430 -5.8493 -0.4146 28 1 10.3860 -4.3394 -2.2964 29 1 -0.3634 0.5915 0.8403 30 1 -0.3634 0.4319 -0.9325 31 1 -0.3633 -1.0236 0.0922 32 1 1.8934 -0.5137 -0.8900 33 1 1.7551 1.9287 -0.9330 34 1 1.6020 1.9827 0.8395 35 1 3.1259 1.4440 0.0938 36 1 0.5649 0.0917 2.5923 37 1 2.0197 1.0993 2.4009 38 1 2.7817 -1.3471 3.5886 39 1 1.9422 0.6567 7.7876 40 1 3.3116 -1.0739 9.2512 41 1 5.5968 -2.8360 7.7191 42 1 4.2708 -3.4594 8.7298 43 1 4.4026 -3.9599 7.0267 44 1 3.9219 0.0189 0.8631 45 1 3.4166 -2.8801 0.6823 46 1 3.5950 -1.7717 -0.6989 47 1 5.4542 -3.7153 -0.8709 48 1 7.6652 -5.7975 -2.2551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496643738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:23 Heat of formation + Delta-G solvation = -23.383358 kcal Electronic energy + Delta-G solvation = -29221.657232 eV Core-core repulsion = 25119.170792 eV Total energy + Delta-G solvation = -4102.486440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.54834 -40.74660 -40.08804 -38.96505 -35.98612 -35.22684 -34.31290 -34.27538 -33.20867 -31.71871 -29.98695 -28.51516 -28.13647 -27.40351 -25.75326 -24.38826 -23.40186 -22.38890 -21.11485 -21.06789 -20.28924 -19.90402 -18.77227 -17.89248 -17.49282 -17.28295 -17.18939 -16.59134 -16.47084 -16.34581 -15.82566 -15.56249 -15.31317 -15.22091 -14.83396 -14.73808 -14.53396 -14.12584 -13.91188 -13.78858 -13.57738 -13.51816 -13.37085 -13.34438 -13.11935 -12.91260 -12.79651 -12.49993 -12.39427 -12.12451 -12.07606 -11.88119 -11.74744 -11.50680 -11.44175 -11.23320 -10.33162 -10.29091 -10.08697 -9.99244 -9.85607 -9.28524 -8.45773 -5.93922 0.57646 1.23827 1.36265 1.41438 1.55400 1.65144 2.08232 2.27218 2.30524 2.42845 2.89865 3.21725 3.42803 3.55092 3.75370 3.87266 4.02133 4.05310 4.09111 4.26485 4.34300 4.36521 4.39907 4.48466 4.49440 4.60444 4.69804 4.71014 4.73944 4.78362 4.81023 4.82287 4.92945 5.00841 5.06620 5.22363 5.34625 5.37977 5.40761 5.42417 5.53829 5.89584 5.93410 6.10681 6.37677 6.51222 6.62307 6.95110 7.14793 7.21735 7.58881 8.15044 8.71855 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007873 B = 0.003258 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3555.483352 B = 8591.649779 C =11602.864301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.154 4.154 4 C 0.086 3.914 5 H 0.097 0.903 6 C 0.131 3.869 7 N -0.695 5.695 8 C 0.596 3.404 9 O -0.577 6.577 10 C -0.050 4.050 11 C -0.206 4.206 12 C 0.001 3.999 13 N -0.284 5.284 14 C 0.075 3.925 15 N -0.285 5.285 16 N -0.674 5.674 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.167 0.833 40 H 0.230 0.770 41 H 0.093 0.907 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.345 0.655 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.531 3.491 13.897 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.211 4.211 4 C -0.025 4.025 5 H 0.115 0.885 6 C 0.008 3.992 7 N -0.345 5.345 8 C 0.382 3.618 9 O -0.456 6.456 10 C -0.208 4.208 11 C -0.234 4.234 12 C -0.142 4.142 13 N -0.072 5.072 14 C -0.063 4.063 15 N -0.123 5.123 16 N -0.306 5.306 17 C -0.066 4.066 18 C 0.227 3.773 19 O -0.508 6.508 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.814 3.186 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.249 0.751 39 H 0.184 0.816 40 H 0.247 0.753 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.111 0.889 44 H 0.166 0.834 45 H 0.124 0.876 46 H 0.086 0.914 47 H 0.230 0.770 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.888 3.234 14.204 19.451 hybrid contribution 0.622 0.171 -0.940 1.140 sum -12.266 3.405 13.265 18.385 Atomic orbital electron populations 1.21822 0.93148 1.02539 1.02529 1.21716 0.97849 0.96692 0.97695 1.21944 1.00377 0.96052 1.02715 1.21946 0.87077 1.00024 0.93419 0.88475 1.21564 0.98041 0.96750 0.82894 1.45751 1.52170 1.31190 1.05395 1.17177 0.79417 0.82806 0.82443 1.90717 1.41775 1.26399 1.86718 1.22005 1.05299 0.97628 0.95886 1.22030 1.06720 1.03921 0.90727 1.23529 0.99627 0.91257 0.99832 1.45923 1.36012 1.22536 1.02750 1.22600 0.94368 0.85128 1.04251 1.73563 1.15382 1.17274 1.06041 1.60134 1.07815 1.07409 1.55275 1.21546 0.91126 0.96688 0.97257 1.20909 0.91107 0.82642 0.82624 1.90509 1.67076 1.47841 1.45373 1.41921 1.07416 1.29474 1.42356 1.19661 0.83699 1.15129 1.27547 0.90570 1.25994 1.04611 0.95133 0.95476 1.69678 1.37758 1.19079 1.29636 0.84908 0.77173 0.78232 0.78250 1.19963 1.19526 1.19662 0.92159 0.91757 0.91813 0.90630 0.91389 0.91856 0.93858 0.89892 0.91925 0.75068 0.81582 0.75327 0.88833 0.84555 0.88883 0.83434 0.87597 0.91372 0.77009 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.84 71.98 0.64 -1.57 16 2 C -0.12 -2.29 2.77 -10.79 -0.03 -2.32 16 3 C -0.15 -3.10 8.41 71.98 0.61 -2.49 16 4 C 0.09 1.96 1.95 44.92 0.09 2.05 16 5 H 0.10 2.05 7.79 -2.39 -0.02 2.03 16 6 C 0.13 3.33 4.67 86.38 0.40 3.73 16 7 N -0.70 -20.81 5.39 -466.07 -2.51 -23.32 16 8 C 0.60 19.79 7.83 86.75 0.68 20.47 16 9 O -0.58 -21.47 16.93 -3.96 -0.07 -21.53 16 10 C -0.05 -1.51 7.13 42.46 0.30 -1.21 16 11 C -0.21 -4.93 10.81 22.41 0.24 -4.69 16 12 C 0.00 0.01 11.46 83.54 0.96 0.97 16 13 N -0.28 -5.77 3.70 -369.45 -1.37 -7.14 16 14 C 0.08 0.81 11.31 127.77 1.44 2.25 16 15 N -0.28 -8.26 11.67 -48.18 -0.56 -8.82 16 16 N -0.67 -20.66 5.21 -495.59 -2.58 -23.24 16 17 C 0.07 2.18 5.96 85.56 0.51 2.69 16 18 C 0.44 20.73 7.83 87.66 0.69 21.42 16 19 O -0.62 -34.65 15.89 -3.09 -0.05 -34.70 16 20 N -0.57 -29.23 5.29 -306.99 -1.62 -30.86 16 21 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 22 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 23 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 24 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 25 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H 0.06 0.93 6.96 -2.39 -0.02 0.92 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.50 7.15 -2.39 -0.02 1.49 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.26 6.55 -2.39 -0.02 1.24 16 35 H 0.04 1.01 6.31 -2.38 -0.02 1.00 16 36 H 0.08 1.92 6.95 -2.39 -0.02 1.91 16 37 H 0.06 1.72 6.17 -2.39 -0.01 1.71 16 38 H 0.41 12.93 7.86 -92.71 -0.73 12.20 16 39 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 40 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 41 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 42 H 0.14 0.31 8.13 -2.39 -0.02 0.29 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.34 11.43 6.49 -89.69 -0.58 10.85 16 45 H 0.11 3.11 7.94 -2.39 -0.02 3.09 16 46 H 0.07 1.97 7.22 -2.39 -0.02 1.95 16 47 H 0.40 19.09 7.90 -92.70 -0.73 18.36 16 48 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -78.82 397.84 0.33 -78.49 By element: Atomic # 1 Polarization: 53.19 SS G_CDS: -1.03 Total: 52.17 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 7.81 Total: 23.13 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -8.36 Total: -142.49 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -0.12 Total: -56.24 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -78.82 0.33 -78.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496643738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.107 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds