Wall clock time and date at job start Tue Mar 31 2020 20:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 119.99915 * 2 1 4 4 C 1.53000 * 109.47031 * 269.72638 * 3 2 1 5 5 C 1.53002 * 109.47044 * 299.99985 * 4 3 2 6 6 C 1.52995 * 109.47388 * 59.99852 * 4 3 2 7 7 C 1.53000 * 109.46990 * 179.97438 * 4 3 2 8 8 N 1.46905 * 109.46907 * 179.97438 * 7 4 3 9 9 C 1.46904 * 110.99943 * 180.02562 * 8 7 4 10 10 C 1.50692 * 109.47105 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00112 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99868 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00052 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00019 * 0.02562 * 13 12 10 15 15 C 1.38946 * 120.00251 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99774 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00025 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47304 * 90.00353 * 17 15 13 19 19 H 1.48505 * 109.46893 * 209.99732 * 17 15 13 20 20 H 1.48493 * 109.47173 * 330.00075 * 17 15 13 21 21 C 1.34778 * 119.99912 * 179.72279 * 2 1 3 22 22 O 1.21604 * 119.99931 * 176.57561 * 21 2 1 23 23 C 1.47411 * 119.99777 * 356.57703 * 21 2 1 24 24 N 1.31614 * 125.86822 * 5.54497 * 23 21 2 25 25 C 1.33097 * 109.09510 * 179.83125 * 24 23 21 26 26 C 1.35567 * 108.35305 * 0.43063 * 25 24 23 27 27 N 1.35401 * 107.15450 * 359.74213 * 26 25 24 28 28 H 0.97001 * 126.43367 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.47147 * 95.73722 * 1 2 3 30 30 H 1.09003 * 109.47096 * 215.72966 * 1 2 3 31 31 H 1.08997 * 109.46859 * 335.73057 * 1 2 3 32 32 H 1.09001 * 109.47241 * 29.72505 * 3 2 1 33 33 H 1.09003 * 109.47242 * 149.72229 * 3 2 1 34 34 H 1.09003 * 109.47138 * 59.99573 * 5 4 3 35 35 H 1.08994 * 109.47369 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.46779 * 300.00133 * 5 4 3 37 37 H 1.09001 * 109.46917 * 60.00113 * 6 4 3 38 38 H 1.09003 * 109.47511 * 180.02562 * 6 4 3 39 39 H 1.09004 * 109.47450 * 300.00165 * 6 4 3 40 40 H 1.09001 * 109.47268 * 299.99858 * 7 4 3 41 41 H 1.08996 * 109.46831 * 60.00125 * 7 4 3 42 42 H 1.00899 * 110.99779 * 56.04680 * 8 7 4 43 43 H 1.09006 * 109.46529 * 300.00149 * 9 8 7 44 44 H 1.08993 * 109.47223 * 59.99811 * 9 8 7 45 45 H 0.97001 * 120.00314 * 0.02562 * 12 10 9 46 46 H 0.96998 * 120.00139 * 179.97438 * 16 15 13 47 47 H 1.08001 * 125.82304 * 180.20747 * 25 24 23 48 48 H 1.07992 * 126.42330 * 179.77448 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4585 1.7069 -1.4425 5 6 3.2884 0.6389 -2.1577 6 6 1.1247 1.8881 -2.1697 7 6 3.2229 3.0323 -1.4425 8 7 3.4740 3.4527 -2.8275 9 6 4.2084 4.7244 -2.8667 10 6 4.4464 5.1230 -4.3004 11 8 4.0435 4.4174 -5.2009 12 7 5.1062 6.2640 -4.5819 13 6 5.3232 6.6264 -5.8862 14 1 4.9651 5.9977 -6.6881 15 6 6.0038 7.8025 -6.1765 16 7 6.4390 8.5676 -5.2008 17 14 6.2989 8.2965 -7.9536 18 1 5.1646 9.1276 -8.4313 19 1 7.5585 9.0774 -8.0477 20 1 6.4080 7.0776 -8.7947 21 6 2.1390 -1.1672 0.0056 22 8 3.3534 -1.1685 -0.0573 23 6 1.4038 -2.4423 0.0880 24 7 0.0954 -2.5814 0.0574 25 6 -0.2073 -3.8741 0.1515 26 6 0.9476 -4.5765 0.2545 27 7 1.9637 -3.6825 0.2153 28 1 2.9110 -3.8843 0.2680 29 1 -0.3633 -0.1027 -1.0225 30 1 -0.3633 -0.8343 0.6001 31 1 -0.3633 0.9368 0.4224 32 1 1.6064 2.0296 0.5096 33 1 3.1478 1.1397 0.5181 34 1 2.7434 -0.3051 -2.1577 35 1 3.4747 0.9512 -3.1852 36 1 4.2387 0.5098 -1.6396 37 1 0.5335 2.6490 -1.6602 38 1 1.3106 2.1998 -3.1976 39 1 0.5796 0.9441 -2.1698 40 1 2.6313 3.7930 -0.9331 41 1 4.1732 2.9036 -0.9243 42 1 2.6119 3.5164 -3.3479 43 1 3.6238 5.4971 -2.3674 44 1 5.1653 4.6072 -2.3582 45 1 5.4281 6.8285 -3.8617 46 1 6.9145 9.3885 -5.4034 47 1 -1.2033 -4.2918 0.1500 48 1 1.0399 -5.6483 0.3494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505811392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:35 Heat of formation + Delta-G solvation = 3.531482 kcal Electronic energy + Delta-G solvation = -29109.704830 eV Core-core repulsion = 25008.385505 eV Total energy + Delta-G solvation = -4101.319325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.67447 -40.20902 -38.37490 -37.50250 -35.61727 -33.99059 -33.31038 -32.80818 -31.16149 -30.28916 -28.05629 -27.34316 -27.04078 -26.28545 -24.92800 -23.60501 -22.57711 -21.96060 -20.54986 -19.32913 -18.72479 -18.33335 -17.84202 -16.87299 -16.59683 -16.20057 -15.89533 -15.50547 -15.27509 -14.56907 -14.49097 -14.39089 -14.24100 -14.12414 -13.82400 -13.66385 -13.46620 -13.27310 -13.19371 -12.81343 -12.58130 -12.39859 -11.89868 -11.67857 -11.50089 -11.44850 -11.34697 -11.01587 -10.97975 -10.71753 -10.67078 -10.61684 -10.49201 -10.36608 -10.18920 -10.17034 -9.47113 -9.09406 -8.78456 -8.38549 -7.96090 -7.90005 -6.38014 -3.78604 0.98655 2.16697 2.21050 3.02246 3.08446 3.20440 3.28734 3.35184 3.84731 3.96208 4.15656 4.40856 4.45643 4.71714 4.79957 4.84202 4.92850 4.96673 5.12601 5.17774 5.27081 5.31328 5.38775 5.46125 5.48702 5.61244 5.68487 5.75463 5.84936 5.88959 5.92721 6.02955 6.05567 6.14291 6.19399 6.26912 6.32203 6.37107 6.48439 6.67614 6.72206 6.99355 7.31428 7.33643 7.58776 7.76673 7.81629 8.10732 8.65826 9.21954 9.58934 10.10754 10.79844 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032083 B = 0.001798 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.515549 B =15565.801451 C =15699.095149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.583 5.583 3 C 0.127 3.873 4 C -0.076 4.076 5 C -0.121 4.121 6 C -0.149 4.149 7 C 0.072 3.928 8 N -0.665 5.665 9 C 0.051 3.949 10 C 0.442 3.558 11 O -0.583 6.583 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.601 3.399 22 O -0.533 6.533 23 C 0.151 3.849 24 N -0.440 5.440 25 C -0.033 4.033 26 C -0.025 4.025 27 N -0.525 5.525 28 H 0.431 0.569 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.348 0.652 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.179 0.821 48 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 -22.085 17.430 31.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.314 5.314 3 C 0.004 3.996 4 C -0.077 4.077 5 C -0.178 4.178 6 C -0.207 4.207 7 C -0.059 4.059 8 N -0.298 5.298 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.467 6.467 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.120 0.880 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.386 3.614 22 O -0.409 6.409 23 C -0.111 4.111 24 N -0.163 5.163 25 C -0.185 4.185 26 C -0.164 4.164 27 N -0.126 5.126 28 H 0.270 0.730 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.169 0.831 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.196 0.804 48 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -12.737 -22.038 16.629 30.405 hybrid contribution 0.573 0.474 -0.072 0.747 sum -12.165 -21.565 16.557 29.785 Atomic orbital electron populations 1.22455 0.77790 1.03912 1.03426 1.47371 1.08008 1.04844 1.71207 1.21679 0.97583 0.83394 0.96935 1.20946 0.96098 0.96016 0.94640 1.21691 0.98936 0.95863 1.01326 1.22023 0.95990 1.01574 1.01065 1.21901 0.99172 0.94293 0.90486 1.60069 1.27604 1.30689 1.11457 1.21665 0.99391 0.90461 0.96688 1.19838 0.84257 0.83354 0.89812 1.90518 1.55117 1.53449 1.47614 1.41866 1.49714 1.19871 1.08742 1.19704 1.33501 1.05545 0.84037 0.87958 1.25255 0.96964 0.96080 0.99711 1.69613 1.38703 1.14201 1.31884 0.85857 0.77637 0.78684 0.82103 1.20467 1.20949 1.19432 1.16467 0.85835 0.81574 0.77533 1.90876 1.12615 1.86683 1.50703 1.22746 0.89242 0.87341 1.11731 1.70380 1.10146 1.19369 1.16387 1.22618 0.98930 0.89165 1.07791 1.23010 0.87898 0.96927 1.08562 1.42959 1.10897 1.06486 1.52289 0.72963 0.92054 0.87519 0.91689 0.90077 0.89554 0.94347 0.91366 0.92460 0.93072 0.91658 0.92201 0.95572 0.90949 0.83079 0.94026 0.89648 0.77473 0.91931 0.80426 0.79691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 8.52 59.85 0.51 1.05 16 2 N -0.58 -5.80 2.39 -182.85 -0.44 -6.24 16 3 C 0.13 1.25 4.62 -4.04 -0.02 1.24 16 4 C -0.08 -0.88 0.67 -154.51 -0.10 -0.99 16 5 C -0.12 -1.71 6.93 37.16 0.26 -1.46 16 6 C -0.15 -1.66 7.55 37.16 0.28 -1.38 16 7 C 0.07 0.92 4.65 -3.82 -0.02 0.90 16 8 N -0.66 -11.11 5.34 -115.06 -0.61 -11.72 16 9 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.72 7.82 -10.99 -0.09 10.63 16 11 O -0.58 -16.22 15.78 5.55 0.09 -16.13 16 12 N -0.57 -14.65 5.29 -10.97 -0.06 -14.71 16 13 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 14 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 17 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.60 6.90 6.19 -12.53 -0.08 6.82 16 22 O -0.53 -7.34 14.59 5.27 0.08 -7.27 16 23 C 0.15 1.49 7.68 -154.52 -1.19 0.31 16 24 N -0.44 -4.05 7.66 -11.26 -0.09 -4.14 16 25 C -0.03 -0.22 11.85 -17.96 -0.21 -0.43 16 26 C -0.02 -0.13 12.01 -16.93 -0.20 -0.33 16 27 N -0.52 -3.75 6.15 -10.78 -0.07 -3.82 16 28 H 0.43 2.35 8.96 -40.82 -0.37 1.99 16 29 H 0.06 0.53 6.55 -51.93 -0.34 0.18 16 30 H 0.11 0.90 5.27 -51.93 -0.27 0.62 16 31 H 0.06 0.42 7.83 -51.93 -0.41 0.01 16 32 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 33 H 0.09 0.93 7.47 -51.93 -0.39 0.54 16 34 H 0.04 0.55 6.09 -51.93 -0.32 0.23 16 35 H 0.07 1.11 7.60 -51.93 -0.39 0.72 16 36 H 0.06 0.87 7.65 -51.93 -0.40 0.47 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 39 H 0.06 0.64 5.46 -51.93 -0.28 0.36 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.35 6.02 6.47 -39.29 -0.25 5.77 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.19 0.25 8.06 -52.49 -0.42 -0.18 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -34.71 384.91 -7.69 -42.40 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -6.96 Total: 14.53 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -1.13 Total: 9.10 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -0.54 Total: -64.81 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.16 Total: -23.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.71 -7.69 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505811392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.928 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds