Wall clock time and date at job start Tue Mar 31 2020 20:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46884 * 2 1 4 4 H 1.09000 * 109.47542 * 54.47633 * 3 2 1 5 5 C 1.53003 * 109.47136 * 174.47537 * 3 2 1 6 6 N 1.46499 * 109.47132 * 175.00267 * 5 3 2 7 7 C 1.34780 * 119.99767 * 180.02562 * 6 5 3 8 8 O 1.21621 * 119.99961 * 355.85253 * 7 6 5 9 9 C 1.47166 * 119.99685 * 175.85929 * 7 6 5 10 10 C 1.38401 * 126.88819 * 4.86081 * 9 7 6 11 11 C 1.39671 * 105.36222 * 179.91883 * 10 9 7 12 12 C 1.50692 * 126.07156 * 180.11069 * 11 10 9 13 13 N 1.30870 * 107.85849 * 0.35445 * 11 10 9 14 14 N 1.28441 * 110.92639 * 359.77331 * 13 11 10 15 15 C 1.46498 * 125.18955 * 180.02562 * 14 13 11 16 16 N 1.46907 * 109.47433 * 294.47427 * 3 2 1 17 17 C 1.46904 * 110.99709 * 301.00235 * 16 3 2 18 18 C 1.50692 * 109.46853 * 179.41563 * 17 16 3 19 19 O 1.21297 * 120.00546 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99735 * 179.72307 * 18 17 16 21 21 C 1.37103 * 119.99947 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99966 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99758 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00245 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99733 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47400 * 59.99317 * 25 23 21 27 27 H 1.48497 * 109.46905 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46690 * 299.99552 * 25 23 21 29 29 H 1.08994 * 109.47612 * 65.39550 * 1 2 3 30 30 H 1.09004 * 109.46940 * 185.40167 * 1 2 3 31 31 H 1.09006 * 109.46942 * 305.39496 * 1 2 3 32 32 H 1.08998 * 109.46710 * 240.00010 * 2 1 3 33 33 H 1.08997 * 109.47273 * 120.00221 * 2 1 3 34 34 H 1.08998 * 109.46527 * 294.99730 * 5 3 2 35 35 H 1.08993 * 109.46886 * 54.99727 * 5 3 2 36 36 H 0.97000 * 120.00282 * 359.97438 * 6 5 3 37 37 H 1.08006 * 127.31566 * 0.02562 * 10 9 7 38 38 H 1.09005 * 109.47174 * 270.26466 * 12 11 10 39 39 H 1.09007 * 109.47327 * 30.26531 * 12 11 10 40 40 H 1.08997 * 109.47652 * 150.26465 * 12 11 10 41 41 H 1.08992 * 109.47721 * 272.03559 * 15 14 13 42 42 H 1.09003 * 109.47102 * 32.03741 * 15 14 13 43 43 H 1.09004 * 109.47375 * 152.03283 * 15 14 13 44 44 H 1.00895 * 110.99624 * 64.95322 * 16 3 2 45 45 H 1.08999 * 109.47171 * 59.41677 * 17 16 3 46 46 H 1.08996 * 109.46808 * 299.41765 * 17 16 3 47 47 H 0.96992 * 120.00164 * 0.02562 * 20 18 17 48 48 H 0.97008 * 120.00254 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9841 0.8364 5 6 3.5637 1.4448 0.1389 6 7 4.0629 2.8169 0.0193 7 6 5.3849 3.0633 0.1098 8 8 6.1560 2.1583 0.3658 9 6 5.8951 4.4275 -0.1009 10 6 5.1452 5.5727 -0.3049 11 6 6.0763 6.6037 -0.4496 12 6 5.7602 8.0573 -0.6908 13 7 7.2720 6.0825 -0.3439 14 7 7.2041 4.8161 -0.1402 15 6 8.3548 3.9247 0.0252 16 7 1.6622 2.0955 -1.2606 17 6 2.2217 1.3774 -2.4136 18 6 1.8021 2.0667 -3.6863 19 8 1.1059 3.0588 -3.6377 20 7 2.2054 1.5843 -4.8784 21 6 1.8241 2.2116 -6.0363 22 1 1.2002 3.0921 -5.9932 23 6 2.2395 1.7140 -7.2653 24 7 2.9982 0.6423 -7.3178 25 14 1.7206 2.5692 -8.8430 26 1 2.2194 3.9679 -8.8350 27 1 2.2914 1.8471 -10.0082 28 1 0.2387 2.5727 -8.9396 29 1 -0.3634 0.4278 -0.9343 30 1 -0.3633 -1.0231 0.0967 31 1 -0.3633 0.5953 0.8378 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8403 1.0412 1.1129 35 1 4.0010 0.8292 -0.6471 36 1 3.4421 3.5480 -0.1258 37 1 4.0688 5.6524 -0.3423 38 1 5.7024 8.2435 -1.7633 39 1 4.8046 8.3031 -0.2274 40 1 6.5447 8.6767 -0.2563 41 1 8.6815 3.5680 -0.9515 42 1 9.1692 4.4679 0.5046 43 1 8.0700 3.0750 0.6457 44 1 0.6597 2.1789 -1.3382 45 1 1.8524 0.3519 -2.4171 46 1 3.3095 1.3717 -2.3451 47 1 2.7654 0.7933 -4.9172 48 1 3.2886 0.2951 -8.1758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567950482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:15 Heat of formation + Delta-G solvation = 0.247913 kcal Electronic energy + Delta-G solvation = -29537.586200 eV Core-core repulsion = 25436.124489 eV Total energy + Delta-G solvation = -4101.461711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.56929 -39.67790 -38.57700 -37.29238 -34.57095 -33.96406 -33.76682 -31.82031 -31.24814 -31.16382 -29.73396 -28.61223 -26.61925 -25.59008 -24.41608 -23.94201 -22.53360 -20.88184 -20.55245 -19.57414 -19.02137 -17.96564 -17.67123 -16.88509 -16.39068 -16.28222 -15.68198 -15.42498 -15.08619 -14.80733 -14.38686 -14.25714 -14.09132 -13.97513 -13.76668 -13.55653 -13.50805 -13.26341 -13.24167 -12.67181 -12.53844 -12.36172 -12.33074 -12.28464 -11.96573 -11.82919 -11.52138 -11.39723 -11.07539 -10.89136 -10.84625 -10.73227 -10.45361 -10.22505 -10.10878 -9.51123 -9.29919 -8.97345 -8.87979 -8.51417 -8.14675 -7.97629 -6.42697 -3.83751 1.22491 2.30997 2.50642 3.12242 3.19125 3.23980 3.25186 3.29317 3.88547 4.07738 4.29584 4.39386 4.54612 4.55374 4.82649 4.94697 4.95852 5.05602 5.11945 5.14237 5.21951 5.24994 5.32781 5.37775 5.43381 5.53133 5.54791 5.56217 5.60033 5.71422 5.76351 5.78727 5.85538 5.92062 5.94832 6.06107 6.17142 6.24118 6.33825 6.47284 6.69099 7.09879 7.43487 7.53697 7.55057 8.00099 8.04373 8.10948 8.59310 9.16354 9.52728 10.03643 10.74853 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007703 B = 0.003477 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3634.211404 B = 8051.873120 C =10230.547577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.073 3.927 4 H 0.091 0.909 5 C 0.128 3.872 6 N -0.695 5.695 7 C 0.591 3.409 8 O -0.551 6.551 9 C -0.035 4.035 10 C -0.180 4.180 11 C 0.022 3.978 12 C -0.066 4.066 13 N -0.280 5.280 14 N -0.259 5.259 15 C 0.084 3.916 16 N -0.660 5.660 17 C 0.043 3.957 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.415 0.585 37 H 0.163 0.837 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.355 0.645 45 H 0.049 0.951 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 2.935 17.958 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.109 0.891 5 C 0.004 3.996 6 N -0.346 5.346 7 C 0.377 3.623 8 O -0.430 6.430 9 C -0.164 4.164 10 C -0.209 4.209 11 C -0.134 4.134 12 C -0.125 4.125 13 N -0.114 5.114 14 N -0.046 5.046 15 C -0.056 4.056 16 N -0.293 5.293 17 C -0.089 4.089 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.252 0.748 37 H 0.181 0.819 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.131 0.869 44 H 0.176 0.824 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.628 3.463 17.993 19.169 hybrid contribution -1.445 -0.968 -1.116 2.067 sum 4.184 2.495 16.877 17.566 Atomic orbital electron populations 1.21757 0.95157 1.01963 1.02165 1.22204 0.96875 0.97845 1.03121 1.21943 0.94011 0.93752 0.94118 0.89063 1.21475 0.93200 0.82825 1.02077 1.45478 1.06361 1.10768 1.72032 1.16887 0.82848 0.85562 0.77036 1.90745 1.56509 1.45916 1.49875 1.21340 0.85727 0.95781 1.13535 1.22186 1.00659 0.90636 1.07377 1.22006 0.88451 0.97717 1.05269 1.20089 1.02094 0.87676 1.02619 1.73107 1.25703 0.92525 1.20079 1.45489 1.05581 1.04970 1.48590 1.22371 0.85585 0.93091 1.04597 1.60274 1.18507 1.50965 0.99520 1.21773 1.00742 0.95766 0.90660 1.19781 0.85818 0.87385 0.84429 1.90518 1.42003 1.27538 1.86812 1.41855 1.45806 1.27573 1.04632 1.19644 1.29706 1.10930 0.82720 0.87967 1.25255 0.96670 0.96379 0.99527 1.69603 1.35336 1.22295 1.27005 0.85931 0.78906 0.79175 0.80299 1.19867 1.20970 1.19892 0.92375 0.92486 0.92503 0.90907 0.91280 0.90892 0.91080 0.74827 0.81942 0.90651 0.90457 0.91194 0.89842 0.89108 0.86853 0.82417 0.93300 0.89682 0.77539 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.56 37.16 0.36 -1.04 16 2 C -0.16 -1.49 5.18 -26.73 -0.14 -1.63 16 3 C 0.07 0.74 2.69 -67.71 -0.18 0.55 16 4 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 5 C 0.13 1.43 4.69 -4.04 -0.02 1.41 16 6 N -0.70 -8.50 5.38 -61.47 -0.33 -8.83 16 7 C 0.59 8.39 7.79 -12.63 -0.10 8.29 16 8 O -0.55 -8.77 14.63 5.26 0.08 -8.69 16 9 C -0.04 -0.50 6.96 -82.06 -0.57 -1.07 16 10 C -0.18 -2.32 10.44 -38.99 -0.41 -2.73 16 11 C 0.02 0.28 7.22 -82.47 -0.60 -0.31 16 12 C -0.07 -0.63 10.45 36.00 0.38 -0.25 16 13 N -0.28 -4.01 11.90 33.64 0.40 -3.61 16 14 N -0.26 -3.60 3.75 -63.88 -0.24 -3.84 16 15 C 0.08 0.89 10.94 59.85 0.65 1.55 16 16 N -0.66 -9.02 5.47 -107.99 -0.59 -9.61 16 17 C 0.04 0.71 5.39 -4.98 -0.03 0.68 16 18 C 0.44 10.02 7.82 -10.99 -0.09 9.93 16 19 O -0.58 -15.15 15.77 5.54 0.09 -15.06 16 20 N -0.56 -14.09 5.29 -10.96 -0.06 -14.14 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 25 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.06 0.62 7.17 -51.93 -0.37 0.25 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.76 6.08 -51.93 -0.32 0.45 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.90 6.71 -51.93 -0.35 0.55 16 36 H 0.41 4.83 7.17 -40.82 -0.29 4.54 16 37 H 0.16 1.74 7.58 -52.48 -0.40 1.35 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.11 1.25 6.10 -51.93 -0.32 0.93 16 44 H 0.35 5.09 7.16 -39.29 -0.28 4.81 16 45 H 0.05 0.74 6.13 -51.93 -0.32 0.42 16 46 H 0.09 1.40 6.47 -51.93 -0.34 1.06 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -33.45 395.78 -7.01 -40.46 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -7.04 Total: 17.74 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.98 Total: 7.44 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.09 Total: -63.86 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.16 Total: -23.76 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.45 -7.01 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567950482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.704 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds