Wall clock time and date at job start Tue Mar 31 2020 20:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46884 * 2 1 4 4 H 1.09000 * 109.47542 * 54.47633 * 3 2 1 5 5 C 1.53003 * 109.47136 * 174.47537 * 3 2 1 6 6 N 1.46499 * 109.47132 * 175.00267 * 5 3 2 7 7 C 1.34780 * 119.99767 * 180.02562 * 6 5 3 8 8 O 1.21621 * 119.99961 * 355.85253 * 7 6 5 9 9 C 1.47166 * 119.99685 * 175.85929 * 7 6 5 10 10 C 1.38401 * 126.88819 * 4.86081 * 9 7 6 11 11 C 1.39671 * 105.36222 * 179.91883 * 10 9 7 12 12 C 1.50692 * 126.07156 * 180.11069 * 11 10 9 13 13 N 1.30870 * 107.85849 * 0.35445 * 11 10 9 14 14 N 1.28441 * 110.92639 * 359.77331 * 13 11 10 15 15 C 1.46498 * 125.18955 * 180.02562 * 14 13 11 16 16 N 1.46907 * 109.47433 * 294.47427 * 3 2 1 17 17 C 1.46904 * 110.99709 * 301.00235 * 16 3 2 18 18 C 1.50692 * 109.46853 * 179.41563 * 17 16 3 19 19 O 1.21297 * 120.00546 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99735 * 179.72307 * 18 17 16 21 21 C 1.37103 * 119.99947 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99966 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99758 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00245 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99733 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47400 * 59.99317 * 25 23 21 27 27 H 1.48497 * 109.46905 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46690 * 299.99552 * 25 23 21 29 29 H 1.08994 * 109.47612 * 65.39550 * 1 2 3 30 30 H 1.09004 * 109.46940 * 185.40167 * 1 2 3 31 31 H 1.09006 * 109.46942 * 305.39496 * 1 2 3 32 32 H 1.08998 * 109.46710 * 240.00010 * 2 1 3 33 33 H 1.08997 * 109.47273 * 120.00221 * 2 1 3 34 34 H 1.08998 * 109.46527 * 294.99730 * 5 3 2 35 35 H 1.08993 * 109.46886 * 54.99727 * 5 3 2 36 36 H 0.97000 * 120.00282 * 359.97438 * 6 5 3 37 37 H 1.08006 * 127.31566 * 0.02562 * 10 9 7 38 38 H 1.09005 * 109.47174 * 270.26466 * 12 11 10 39 39 H 1.09007 * 109.47327 * 30.26531 * 12 11 10 40 40 H 1.08997 * 109.47652 * 150.26465 * 12 11 10 41 41 H 1.08992 * 109.47721 * 272.03559 * 15 14 13 42 42 H 1.09003 * 109.47102 * 32.03741 * 15 14 13 43 43 H 1.09004 * 109.47375 * 152.03283 * 15 14 13 44 44 H 1.00895 * 110.99624 * 64.95322 * 16 3 2 45 45 H 1.08999 * 109.47171 * 59.41677 * 17 16 3 46 46 H 1.08996 * 109.46808 * 299.41765 * 17 16 3 47 47 H 0.96992 * 120.00164 * 0.02562 * 20 18 17 48 48 H 0.97008 * 120.00254 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9841 0.8364 5 6 3.5637 1.4448 0.1389 6 7 4.0629 2.8169 0.0193 7 6 5.3849 3.0633 0.1098 8 8 6.1560 2.1583 0.3658 9 6 5.8951 4.4275 -0.1009 10 6 5.1452 5.5727 -0.3049 11 6 6.0763 6.6037 -0.4496 12 6 5.7602 8.0573 -0.6908 13 7 7.2720 6.0825 -0.3439 14 7 7.2041 4.8161 -0.1402 15 6 8.3548 3.9247 0.0252 16 7 1.6622 2.0955 -1.2606 17 6 2.2217 1.3774 -2.4136 18 6 1.8021 2.0667 -3.6863 19 8 1.1059 3.0588 -3.6377 20 7 2.2054 1.5843 -4.8784 21 6 1.8241 2.2116 -6.0363 22 1 1.2002 3.0921 -5.9932 23 6 2.2395 1.7140 -7.2653 24 7 2.9982 0.6423 -7.3178 25 14 1.7206 2.5692 -8.8430 26 1 2.2194 3.9679 -8.8350 27 1 2.2914 1.8471 -10.0082 28 1 0.2387 2.5727 -8.9396 29 1 -0.3634 0.4278 -0.9343 30 1 -0.3633 -1.0231 0.0967 31 1 -0.3633 0.5953 0.8378 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8403 1.0412 1.1129 35 1 4.0010 0.8292 -0.6471 36 1 3.4421 3.5480 -0.1258 37 1 4.0688 5.6524 -0.3423 38 1 5.7024 8.2435 -1.7633 39 1 4.8046 8.3031 -0.2274 40 1 6.5447 8.6767 -0.2563 41 1 8.6815 3.5680 -0.9515 42 1 9.1692 4.4679 0.5046 43 1 8.0700 3.0750 0.6457 44 1 0.6597 2.1789 -1.3382 45 1 1.8524 0.3519 -2.4171 46 1 3.3095 1.3717 -2.3451 47 1 2.7654 0.7933 -4.9172 48 1 3.2886 0.2951 -8.1758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567950482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:14 Heat of formation + Delta-G solvation = -25.431440 kcal Electronic energy + Delta-G solvation = -29538.699741 eV Core-core repulsion = 25436.124489 eV Total energy + Delta-G solvation = -4102.575251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.56482 -40.79284 -40.11155 -38.60662 -35.97200 -35.52042 -34.75706 -33.30688 -32.76820 -32.22901 -30.56290 -29.63820 -28.09195 -26.47757 -26.08929 -24.95885 -23.46185 -21.87530 -21.75455 -20.93423 -20.24942 -19.83460 -18.67833 -18.33241 -17.41162 -17.33196 -17.01519 -16.60093 -16.47114 -16.12676 -15.90168 -15.60200 -15.33772 -15.17485 -14.80930 -14.73742 -14.36047 -14.34957 -14.13395 -14.01428 -13.56035 -13.52481 -13.29736 -13.24058 -13.16318 -13.14195 -12.90002 -12.71071 -12.42923 -12.28770 -12.13851 -11.83624 -11.72163 -11.65840 -11.48436 -11.19847 -10.36657 -10.31878 -10.00928 -9.97229 -9.84068 -9.33137 -8.46303 -5.94960 0.17997 1.36789 1.39339 1.41148 1.51897 1.51902 2.06474 2.09730 2.22895 2.29277 2.95866 3.21384 3.46611 3.50722 3.60109 3.72273 4.01610 4.06189 4.17997 4.25217 4.29786 4.31051 4.36738 4.41153 4.48708 4.54137 4.58354 4.60455 4.65315 4.75537 4.82559 4.88236 4.94742 5.00918 5.12245 5.14044 5.26894 5.35534 5.40541 5.40867 5.55224 5.74643 5.88521 6.09067 6.39267 6.44373 6.59766 6.99156 7.07554 7.12897 7.57046 8.11557 8.70931 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007703 B = 0.003477 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3634.211404 B = 8051.873120 C =10230.547577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.156 4.156 3 C 0.082 3.918 4 H 0.115 0.885 5 C 0.127 3.873 6 N -0.687 5.687 7 C 0.588 3.412 8 O -0.574 6.574 9 C -0.055 4.055 10 C -0.183 4.183 11 C 0.011 3.989 12 C -0.065 4.065 13 N -0.300 5.300 14 N -0.269 5.269 15 C 0.080 3.920 16 N -0.664 5.664 17 C 0.063 3.937 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.081 0.919 23 C -0.013 4.013 24 N -0.923 5.923 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.418 0.582 37 H 0.181 0.819 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.353 0.647 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.393 0.607 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 3.023 18.879 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C -0.028 4.028 4 H 0.133 0.867 5 C 0.003 3.997 6 N -0.338 5.338 7 C 0.374 3.626 8 O -0.455 6.455 9 C -0.184 4.184 10 C -0.212 4.212 11 C -0.145 4.145 12 C -0.123 4.123 13 N -0.134 5.134 14 N -0.056 5.056 15 C -0.059 4.059 16 N -0.298 5.298 17 C -0.070 4.070 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.564 5.564 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.256 0.744 37 H 0.198 0.802 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.174 0.826 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.227 0.773 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.111 3.536 18.937 19.931 hybrid contribution -1.302 -0.985 -1.313 2.095 sum 3.809 2.550 17.624 18.211 Atomic orbital electron populations 1.21746 0.94912 1.02510 1.01719 1.22163 0.96955 0.96920 1.03557 1.22005 0.93337 0.94622 0.92801 0.86673 1.21580 0.93630 0.82025 1.02425 1.45484 1.05782 1.11386 1.71118 1.16985 0.83267 0.85428 0.76906 1.90727 1.57113 1.46507 1.51149 1.21548 0.86295 0.96135 1.14374 1.22504 1.01610 0.90267 1.06772 1.22626 0.88091 0.99255 1.04520 1.20215 1.03447 0.85668 1.03005 1.73091 1.26584 0.92885 1.20860 1.45786 1.06152 1.05145 1.48563 1.22510 0.85522 0.92977 1.04895 1.60249 1.18280 1.51416 0.99819 1.21530 1.00891 0.96051 0.88512 1.20850 0.84092 0.86703 0.85625 1.90488 1.43135 1.29064 1.87604 1.41952 1.46525 1.27864 1.04953 1.19639 1.30845 1.11250 0.84448 0.90083 1.26025 0.96334 0.96882 1.02047 1.69673 1.35721 1.23035 1.27927 0.85019 0.78692 0.78104 0.76741 1.19801 1.19707 1.19411 0.94288 0.91859 0.91108 0.92156 0.89162 0.89327 0.92506 0.74427 0.80161 0.90450 0.88437 0.90388 0.89588 0.86978 0.87317 0.82631 0.91431 0.89321 0.77334 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.56 71.98 0.69 -1.73 16 2 C -0.16 -2.50 5.18 30.59 0.16 -2.34 16 3 C 0.08 1.47 2.69 44.91 0.12 1.59 16 4 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 5 C 0.13 2.59 4.69 86.38 0.40 3.00 16 6 N -0.69 -15.93 5.38 -466.64 -2.51 -18.44 16 7 C 0.59 16.41 7.79 86.59 0.67 17.08 16 8 O -0.57 -18.13 14.63 -4.10 -0.06 -18.19 16 9 C -0.06 -1.54 6.96 40.79 0.28 -1.25 16 10 C -0.18 -4.58 10.44 22.65 0.24 -4.34 16 11 C 0.01 0.28 7.22 43.05 0.31 0.59 16 12 C -0.07 -1.14 10.45 71.23 0.74 -0.40 16 13 N -0.30 -8.49 11.90 -47.50 -0.57 -9.05 16 14 N -0.27 -7.45 3.75 -356.03 -1.33 -8.78 16 15 C 0.08 1.71 10.94 127.77 1.40 3.11 16 16 N -0.66 -17.20 5.47 -495.57 -2.71 -19.91 16 17 C 0.06 2.01 5.39 85.55 0.46 2.47 16 18 C 0.44 20.17 7.82 87.65 0.69 20.85 16 19 O -0.62 -32.38 15.77 -3.08 -0.05 -32.43 16 20 N -0.58 -29.36 5.29 -306.98 -1.62 -30.98 16 21 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 24 N -0.92 -50.27 13.05 21.66 0.28 -49.98 16 25 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H 0.04 0.77 7.17 -2.39 -0.02 0.75 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 1.14 6.08 -2.39 -0.01 1.12 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.35 6.71 -2.39 -0.02 1.34 16 36 H 0.42 9.11 7.17 -92.71 -0.66 8.45 16 37 H 0.18 3.63 7.58 -2.91 -0.02 3.61 16 38 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.11 2.42 6.10 -2.39 -0.01 2.40 16 44 H 0.35 9.67 7.16 -89.70 -0.64 9.03 16 45 H 0.07 1.95 6.13 -2.39 -0.01 1.94 16 46 H 0.09 2.85 6.47 -2.39 -0.02 2.83 16 47 H 0.39 19.41 7.90 -92.71 -0.73 18.67 16 48 H 0.28 14.19 8.31 -92.70 -0.77 13.42 16 Total: -1.00 -72.65 395.78 -0.11 -72.77 By element: Atomic # 1 Polarization: 50.57 SS G_CDS: -1.02 Total: 49.55 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 7.45 Total: 20.42 kcal Atomic # 7 Polarization: -128.69 SS G_CDS: -8.46 Total: -137.15 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.11 Total: -50.62 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.65 -0.11 -72.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567950482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.335 kcal (2) G-P(sol) polarization free energy of solvation -72.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds