Wall clock time and date at job start Tue Mar 31 2020 20:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 H 1.08995 * 109.47349 * 55.36671 * 3 2 1 5 5 C 1.52991 * 109.47340 * 175.37451 * 3 2 1 6 6 N 1.46496 * 109.47412 * 174.99655 * 5 3 2 7 7 C 1.34783 * 120.00376 * 180.02562 * 6 5 3 8 8 O 1.21607 * 119.99476 * 359.97438 * 7 6 5 9 9 C 1.47404 * 120.00201 * 180.02562 * 7 6 5 10 10 N 1.31618 * 125.86177 * 0.30364 * 9 7 6 11 11 C 1.33106 * 109.09038 * 180.17143 * 10 9 7 12 12 C 1.35559 * 108.35309 * 359.56866 * 11 10 9 13 13 N 1.35403 * 107.15731 * 0.25744 * 12 11 10 14 14 C 1.46507 * 126.43628 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47418 * 265.02897 * 14 13 12 16 16 N 1.46906 * 109.46764 * 295.37446 * 3 2 1 17 17 C 1.46903 * 110.99555 * 302.88675 * 16 3 2 18 18 C 1.50700 * 109.46762 * 185.64006 * 17 16 3 19 19 O 1.21293 * 120.00335 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99939 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99735 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00065 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99657 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00329 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00007 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47280 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47149 * 119.99957 * 25 23 21 28 28 H 1.48499 * 109.47499 * 239.99939 * 25 23 21 29 29 H 1.09000 * 109.47569 * 298.73663 * 1 2 3 30 30 H 1.09000 * 109.47045 * 58.74015 * 1 2 3 31 31 H 1.09004 * 109.47047 * 178.73516 * 1 2 3 32 32 H 1.08993 * 109.47267 * 239.99527 * 2 1 3 33 33 H 1.09009 * 109.46569 * 119.99504 * 2 1 3 34 34 H 1.09001 * 109.47243 * 54.99379 * 5 3 2 35 35 H 1.09003 * 109.47382 * 294.99559 * 5 3 2 36 36 H 0.97002 * 119.99764 * 359.97438 * 6 5 3 37 37 H 1.08003 * 125.81942 * 179.82793 * 11 10 9 38 38 H 1.07993 * 126.42348 * 180.28330 * 12 11 10 39 39 H 1.09000 * 109.46635 * 25.03588 * 14 13 12 40 40 H 1.08997 * 109.46591 * 145.03087 * 14 13 12 41 41 H 1.09001 * 109.47500 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47726 * 300.00521 * 15 14 13 43 43 H 1.09005 * 109.46826 * 60.00334 * 15 14 13 44 44 H 1.00894 * 111.00399 * 66.83896 * 16 3 2 45 45 H 1.08997 * 109.47250 * 305.63550 * 17 16 3 46 46 H 1.08998 * 109.47488 * 65.63934 * 17 16 3 47 47 H 0.96998 * 119.99725 * 359.97438 * 20 18 17 48 48 H 0.96995 * 120.00577 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6105 1.9797 0.8455 5 6 3.5655 1.4441 0.1163 6 7 4.0630 2.8168 -0.0036 7 6 5.3862 3.0628 0.0686 8 8 6.1671 2.1453 0.2338 9 6 5.8867 4.4440 -0.0515 10 7 5.1480 5.5195 -0.2249 11 6 5.9413 6.5862 -0.2927 12 6 7.2245 6.1738 -0.1481 13 7 7.1970 4.8286 0.0039 14 6 8.3544 3.9503 0.1918 15 6 8.7886 3.3824 -1.1608 16 7 1.6436 2.1019 -1.2515 17 6 2.1484 1.3648 -2.4176 18 6 1.8430 2.1408 -3.6729 19 8 1.2617 3.2030 -3.6030 20 7 2.2150 1.6538 -4.8734 21 6 1.9368 2.3595 -6.0154 22 1 1.4199 3.3058 -5.9530 23 6 2.3207 1.8578 -7.2529 24 7 2.9501 0.7067 -7.3288 25 14 1.9423 2.8196 -8.8089 26 1 1.2321 4.0747 -8.4547 27 1 3.2104 3.1494 -9.5078 28 1 1.0841 1.9997 -9.7014 29 1 -0.3634 0.4941 0.9011 30 1 -0.3633 0.5333 -0.8785 31 1 -0.3633 -1.0275 -0.0227 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9912 0.8325 -0.6792 35 1 3.8566 1.0354 1.0840 36 1 3.4401 3.5485 -0.1357 37 1 5.6174 7.6068 -0.4341 38 1 8.1039 6.8006 -0.1528 39 1 9.1755 4.5196 0.6275 40 1 8.0849 3.1321 0.8597 41 1 9.6501 2.7293 -1.0211 42 1 7.9675 2.8132 -1.5965 43 1 9.0581 4.2006 -1.8287 44 1 0.6420 2.2134 -1.3000 45 1 3.2263 1.2328 -2.3253 46 1 1.6657 0.3888 -2.4674 47 1 2.6796 0.8042 -4.9293 48 1 3.2178 0.3563 -8.1927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567958560.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:30 Heat of formation + Delta-G solvation = -12.324742 kcal Electronic energy + Delta-G solvation = -29726.589239 eV Core-core repulsion = 25624.582336 eV Total energy + Delta-G solvation = -4102.006902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31653 -39.53298 -38.47422 -37.22490 -35.29623 -34.01802 -33.79517 -31.73658 -31.11777 -30.61199 -29.95420 -28.44360 -26.55328 -24.56575 -24.14591 -23.65187 -22.31580 -21.33896 -20.46725 -19.72576 -19.03083 -17.92453 -17.73150 -16.80990 -16.37462 -15.91484 -15.83271 -15.42481 -14.93848 -14.75404 -14.62302 -14.21976 -14.17695 -13.97207 -13.87393 -13.82239 -13.54294 -13.44158 -13.13821 -12.77496 -12.54619 -12.28347 -12.22599 -11.89863 -11.74511 -11.53465 -11.46622 -11.35103 -11.06581 -10.84797 -10.76369 -10.31171 -10.26188 -10.17968 -10.11337 -9.86256 -9.46933 -9.06048 -8.55840 -8.45030 -8.02113 -7.90768 -6.37268 -3.77650 1.35844 2.36072 2.60552 3.19185 3.29074 3.29698 3.37053 3.48518 3.96669 4.12707 4.32216 4.42305 4.46977 4.62395 4.68891 4.80904 4.90582 5.00387 5.05232 5.19373 5.20704 5.27980 5.30514 5.33745 5.43334 5.46443 5.56848 5.58343 5.61057 5.76249 5.83530 5.88863 5.94809 5.99916 6.10510 6.13001 6.21591 6.31386 6.45358 6.55908 6.84557 7.18728 7.49383 7.59722 7.63059 7.88608 8.11463 8.21854 8.66579 9.23104 9.59828 10.11704 10.80726 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007928 B = 0.003567 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.765980 B = 7846.779638 C =10006.423907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.091 0.909 5 C 0.128 3.872 6 N -0.685 5.685 7 C 0.605 3.395 8 O -0.551 6.551 9 C 0.143 3.857 10 N -0.438 5.438 11 C -0.027 4.027 12 C -0.034 4.034 13 N -0.415 5.415 14 C 0.097 3.903 15 C -0.164 4.164 16 N -0.657 5.657 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.579 6.579 20 N -0.566 5.566 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.423 0.577 37 H 0.177 0.823 38 H 0.181 0.819 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.353 0.647 45 H 0.085 0.915 46 H 0.048 0.952 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 2.012 18.425 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.109 0.891 5 C 0.004 3.996 6 N -0.337 5.337 7 C 0.389 3.611 8 O -0.429 6.429 9 C -0.117 4.117 10 N -0.159 5.159 11 C -0.180 4.180 12 C -0.172 4.172 13 N -0.096 5.096 14 C -0.024 4.024 15 C -0.222 4.222 16 N -0.290 5.290 17 C -0.088 4.088 18 C 0.229 3.771 19 O -0.463 6.463 20 N -0.203 5.203 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.262 0.738 37 H 0.194 0.806 38 H 0.198 0.802 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.174 0.826 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.152 2.247 18.393 20.243 hybrid contribution 0.307 -0.453 -1.058 1.191 sum 8.459 1.793 17.335 19.372 Atomic orbital electron populations 1.21757 0.95219 1.01979 1.02090 1.22210 0.96827 0.97857 1.03075 1.21918 0.93985 0.93620 0.94251 0.89066 1.21481 0.93254 0.82912 1.01950 1.45477 1.06338 1.10835 1.71008 1.16442 0.83075 0.84427 0.77142 1.90772 1.56089 1.44509 1.51556 1.22642 0.80728 0.95663 1.12648 1.70267 1.33083 0.97468 1.15100 1.22442 0.88926 0.98712 1.07945 1.22885 1.01287 0.83699 1.09335 1.45276 1.07435 1.07204 1.49704 1.22096 0.85752 0.94294 1.00281 1.22076 1.02773 1.01631 0.95742 1.60172 1.19572 1.49809 0.99437 1.21755 1.01074 0.95267 0.90708 1.19809 0.85178 0.87891 0.84268 1.90529 1.45705 1.23560 1.86483 1.41865 1.51797 1.21817 1.04835 1.19745 1.34941 1.04707 0.83185 0.87906 1.25240 0.96962 0.96418 0.99374 1.69619 1.39958 1.18738 1.26156 0.85824 0.78077 0.79577 0.81021 1.19206 1.20816 1.20805 0.92531 0.92389 0.92500 0.90965 0.91310 0.91066 0.90966 0.73832 0.80590 0.80207 0.89202 0.87328 0.90421 0.91088 0.92226 0.82620 0.89694 0.93416 0.77607 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.70 37.16 0.36 -1.11 16 2 C -0.16 -1.58 5.10 -26.73 -0.14 -1.71 16 3 C 0.07 0.82 2.70 -67.71 -0.18 0.64 16 4 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 5 C 0.13 1.58 4.76 -4.05 -0.02 1.56 16 6 N -0.69 -9.79 5.39 -61.39 -0.33 -10.12 16 7 C 0.61 9.37 7.81 -12.53 -0.10 9.27 16 8 O -0.55 -8.99 14.52 5.27 0.08 -8.91 16 9 C 0.14 2.15 7.78 -154.53 -1.20 0.95 16 10 N -0.44 -6.82 10.90 -11.26 -0.12 -6.95 16 11 C -0.03 -0.33 11.85 -17.96 -0.21 -0.54 16 12 C -0.03 -0.35 11.53 -16.93 -0.20 -0.55 16 13 N -0.42 -5.06 2.76 -114.59 -0.32 -5.38 16 14 C 0.10 0.93 6.18 -4.04 -0.02 0.91 16 15 C -0.16 -1.63 10.23 37.15 0.38 -1.25 16 16 N -0.66 -9.86 5.32 -107.99 -0.57 -10.43 16 17 C 0.04 0.77 5.31 -4.97 -0.03 0.75 16 18 C 0.44 10.55 7.83 -10.98 -0.09 10.46 16 19 O -0.58 -15.80 15.90 5.55 0.09 -15.71 16 20 N -0.57 -14.61 5.29 -10.96 -0.06 -14.67 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 25 Si 0.93 21.46 29.55 -169.99 -5.02 16.43 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.64 6.87 -51.93 -0.36 0.28 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.79 6.23 -51.93 -0.32 0.46 16 33 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.07 0.96 6.61 -51.93 -0.34 0.62 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.42 6.39 7.82 -40.82 -0.32 6.07 16 37 H 0.18 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.11 1.15 6.64 -51.93 -0.34 0.81 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.35 5.39 7.28 -39.30 -0.29 5.10 16 45 H 0.08 1.47 6.22 -51.93 -0.32 1.14 16 46 H 0.05 0.75 6.48 -51.93 -0.34 0.41 16 47 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -34.37 396.57 -8.35 -42.71 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -7.10 Total: 20.03 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -1.68 Total: 11.30 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -0.68 Total: -71.83 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.16 Total: -24.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.37 -8.35 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567958560.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.388 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds