Wall clock time and date at job start Tue Mar 31 2020 20:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 H 1.08995 * 109.47349 * 55.36671 * 3 2 1 5 5 C 1.52991 * 109.47340 * 175.37451 * 3 2 1 6 6 N 1.46496 * 109.47412 * 174.99655 * 5 3 2 7 7 C 1.34783 * 120.00376 * 180.02562 * 6 5 3 8 8 O 1.21607 * 119.99476 * 359.97438 * 7 6 5 9 9 C 1.47404 * 120.00201 * 180.02562 * 7 6 5 10 10 N 1.31618 * 125.86177 * 0.30364 * 9 7 6 11 11 C 1.33106 * 109.09038 * 180.17143 * 10 9 7 12 12 C 1.35559 * 108.35309 * 359.56866 * 11 10 9 13 13 N 1.35403 * 107.15731 * 0.25744 * 12 11 10 14 14 C 1.46507 * 126.43628 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47418 * 265.02897 * 14 13 12 16 16 N 1.46906 * 109.46764 * 295.37446 * 3 2 1 17 17 C 1.46903 * 110.99555 * 302.88675 * 16 3 2 18 18 C 1.50700 * 109.46762 * 185.64006 * 17 16 3 19 19 O 1.21293 * 120.00335 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99939 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99735 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00065 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99657 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00329 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00007 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47280 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47149 * 119.99957 * 25 23 21 28 28 H 1.48499 * 109.47499 * 239.99939 * 25 23 21 29 29 H 1.09000 * 109.47569 * 298.73663 * 1 2 3 30 30 H 1.09000 * 109.47045 * 58.74015 * 1 2 3 31 31 H 1.09004 * 109.47047 * 178.73516 * 1 2 3 32 32 H 1.08993 * 109.47267 * 239.99527 * 2 1 3 33 33 H 1.09009 * 109.46569 * 119.99504 * 2 1 3 34 34 H 1.09001 * 109.47243 * 54.99379 * 5 3 2 35 35 H 1.09003 * 109.47382 * 294.99559 * 5 3 2 36 36 H 0.97002 * 119.99764 * 359.97438 * 6 5 3 37 37 H 1.08003 * 125.81942 * 179.82793 * 11 10 9 38 38 H 1.07993 * 126.42348 * 180.28330 * 12 11 10 39 39 H 1.09000 * 109.46635 * 25.03588 * 14 13 12 40 40 H 1.08997 * 109.46591 * 145.03087 * 14 13 12 41 41 H 1.09001 * 109.47500 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47726 * 300.00521 * 15 14 13 43 43 H 1.09005 * 109.46826 * 60.00334 * 15 14 13 44 44 H 1.00894 * 111.00399 * 66.83896 * 16 3 2 45 45 H 1.08997 * 109.47250 * 305.63550 * 17 16 3 46 46 H 1.08998 * 109.47488 * 65.63934 * 17 16 3 47 47 H 0.96998 * 119.99725 * 359.97438 * 20 18 17 48 48 H 0.96995 * 120.00577 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6105 1.9797 0.8455 5 6 3.5655 1.4441 0.1163 6 7 4.0630 2.8168 -0.0036 7 6 5.3862 3.0628 0.0686 8 8 6.1671 2.1453 0.2338 9 6 5.8867 4.4440 -0.0515 10 7 5.1480 5.5195 -0.2249 11 6 5.9413 6.5862 -0.2927 12 6 7.2245 6.1738 -0.1481 13 7 7.1970 4.8286 0.0039 14 6 8.3544 3.9503 0.1918 15 6 8.7886 3.3824 -1.1608 16 7 1.6436 2.1019 -1.2515 17 6 2.1484 1.3648 -2.4176 18 6 1.8430 2.1408 -3.6729 19 8 1.2617 3.2030 -3.6030 20 7 2.2150 1.6538 -4.8734 21 6 1.9368 2.3595 -6.0154 22 1 1.4199 3.3058 -5.9530 23 6 2.3207 1.8578 -7.2529 24 7 2.9501 0.7067 -7.3288 25 14 1.9423 2.8196 -8.8089 26 1 1.2321 4.0747 -8.4547 27 1 3.2104 3.1494 -9.5078 28 1 1.0841 1.9997 -9.7014 29 1 -0.3634 0.4941 0.9011 30 1 -0.3633 0.5333 -0.8785 31 1 -0.3633 -1.0275 -0.0227 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9912 0.8325 -0.6792 35 1 3.8566 1.0354 1.0840 36 1 3.4401 3.5485 -0.1357 37 1 5.6174 7.6068 -0.4341 38 1 8.1039 6.8006 -0.1528 39 1 9.1755 4.5196 0.6275 40 1 8.0849 3.1321 0.8597 41 1 9.6501 2.7293 -1.0211 42 1 7.9675 2.8132 -1.5965 43 1 9.0581 4.2006 -1.8287 44 1 0.6420 2.2134 -1.3000 45 1 3.2263 1.2328 -2.3253 46 1 1.6657 0.3888 -2.4674 47 1 2.6796 0.8042 -4.9293 48 1 3.2178 0.3563 -8.1927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567958560.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:29 Heat of formation + Delta-G solvation = -38.476784 kcal Electronic energy + Delta-G solvation = -29727.723276 eV Core-core repulsion = 25624.582336 eV Total energy + Delta-G solvation = -4103.140940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.25831 -40.73034 -40.06867 -38.61721 -36.21500 -35.94389 -35.00100 -33.31106 -32.75729 -31.53409 -30.88169 -29.51230 -28.10115 -26.12942 -25.33830 -24.52847 -23.26689 -22.21763 -21.77662 -21.02225 -20.42636 -19.86685 -18.74496 -18.33090 -17.40440 -17.15833 -16.97278 -16.68471 -16.48647 -15.99947 -15.89048 -15.60518 -15.45106 -15.24236 -15.00728 -14.82544 -14.67888 -14.50793 -14.29209 -14.04894 -13.63119 -13.54050 -13.51485 -13.16433 -13.03027 -12.90492 -12.73849 -12.41158 -12.37342 -12.27738 -12.12888 -11.84316 -11.66367 -11.50892 -11.35362 -11.12296 -10.82926 -10.34753 -10.15979 -10.01067 -9.48376 -9.31342 -8.47040 -5.95624 0.35015 1.35199 1.39824 1.45550 1.54533 1.65149 2.05958 2.27286 2.31830 2.41617 2.93979 3.20023 3.36339 3.54413 3.70993 3.74565 3.87053 4.03545 4.03899 4.16457 4.27411 4.33003 4.35888 4.40514 4.46379 4.47199 4.52016 4.57985 4.69098 4.73390 4.77240 4.80553 4.92986 5.11989 5.12777 5.25231 5.26071 5.37224 5.39175 5.40444 5.67634 5.88361 5.95597 6.09427 6.36981 6.43471 6.59875 6.86542 7.10326 7.12786 7.56264 8.12048 8.70831 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007928 B = 0.003567 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.765980 B = 7846.779638 C =10006.423907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.154 4.154 3 C 0.082 3.918 4 H 0.110 0.890 5 C 0.127 3.873 6 N -0.686 5.686 7 C 0.598 3.402 8 O -0.568 6.568 9 C 0.102 3.898 10 N -0.470 5.470 11 C -0.054 4.054 12 C -0.008 4.008 13 N -0.415 5.415 14 C 0.095 3.905 15 C -0.159 4.159 16 N -0.668 5.668 17 C 0.065 3.935 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.418 0.582 37 H 0.198 0.802 38 H 0.229 0.771 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.030 0.970 43 H 0.065 0.935 44 H 0.352 0.648 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.394 0.606 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.456 2.272 19.279 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 C -0.028 4.028 4 H 0.128 0.872 5 C 0.004 3.996 6 N -0.336 5.336 7 C 0.383 3.617 8 O -0.448 6.448 9 C -0.156 4.156 10 N -0.193 5.193 11 C -0.207 4.207 12 C -0.147 4.147 13 N -0.095 5.095 14 C -0.025 4.025 15 C -0.217 4.217 16 N -0.301 5.301 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.194 1.194 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.256 0.744 37 H 0.215 0.785 38 H 0.245 0.755 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.173 0.827 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.227 0.773 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.442 2.453 19.269 21.598 hybrid contribution -0.046 -0.470 -1.262 1.348 sum 9.395 1.983 18.007 20.407 Atomic orbital electron populations 1.21748 0.94845 1.02394 1.01901 1.22157 0.97009 0.96483 1.03696 1.21974 0.93272 0.94782 0.92741 0.87171 1.21606 0.93755 0.81913 1.02368 1.45558 1.06032 1.11345 1.70682 1.16670 0.83280 0.84837 0.76939 1.90740 1.56398 1.45075 1.52626 1.22564 0.82213 0.95354 1.15444 1.70182 1.34742 0.98594 1.15748 1.23008 0.89792 0.99113 1.08796 1.23647 1.02152 0.83120 1.05756 1.45541 1.07092 1.08192 1.48704 1.22296 0.85950 0.94441 0.99862 1.22038 1.02019 1.01743 0.95911 1.60115 1.19502 1.50592 0.99935 1.21495 1.01470 0.95185 0.88560 1.20903 0.83328 0.87608 0.85485 1.90494 1.47056 1.25440 1.87299 1.41946 1.52404 1.21911 1.05128 1.19696 1.36675 1.04765 0.84956 0.90387 1.26031 0.96214 0.97268 1.01803 1.69682 1.39887 1.19487 1.27287 0.84888 0.78267 0.78071 0.77225 1.19763 1.19744 1.19361 0.91207 0.94186 0.91714 0.91988 0.89029 0.92454 0.89158 0.74448 0.78512 0.75457 0.84882 0.88728 0.88211 0.95117 0.91604 0.82722 0.89388 0.91199 0.77291 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.70 71.98 0.70 -1.95 16 2 C -0.15 -2.75 5.10 30.59 0.16 -2.60 16 3 C 0.08 1.76 2.70 44.91 0.12 1.89 16 4 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 5 C 0.13 3.08 4.76 86.38 0.41 3.49 16 6 N -0.69 -20.09 5.39 -466.40 -2.51 -22.60 16 7 C 0.60 19.14 7.81 86.66 0.68 19.81 16 8 O -0.57 -19.09 14.52 -4.05 -0.06 -19.15 16 9 C 0.10 3.13 7.78 136.28 1.06 4.19 16 10 N -0.47 -14.92 10.90 -189.53 -2.07 -16.98 16 11 C -0.05 -1.28 11.85 83.88 0.99 -0.29 16 12 C -0.01 -0.14 11.53 83.52 0.96 0.82 16 13 N -0.41 -9.64 2.76 -516.46 -1.42 -11.06 16 14 C 0.09 1.66 6.18 86.37 0.53 2.19 16 15 C -0.16 -3.01 10.23 71.98 0.74 -2.28 16 16 N -0.67 -20.10 5.32 -495.58 -2.64 -22.73 16 17 C 0.07 2.30 5.31 85.56 0.45 2.75 16 18 C 0.44 21.58 7.83 87.66 0.69 22.27 16 19 O -0.62 -34.94 15.90 -3.07 -0.05 -34.98 16 20 N -0.58 -30.73 5.29 -306.98 -1.62 -32.35 16 21 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -51.17 13.05 21.66 0.28 -50.88 16 25 Si 0.99 44.12 29.55 68.60 2.03 46.15 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.04 0.84 6.87 -2.39 -0.02 0.83 16 31 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.06 1.26 6.23 -2.39 -0.01 1.24 16 33 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.06 1.56 6.61 -2.39 -0.02 1.54 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.42 13.08 7.82 -92.71 -0.72 12.36 16 37 H 0.20 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.13 1.17 8.13 -2.39 -0.02 1.16 16 40 H 0.09 1.96 6.64 -2.39 -0.02 1.94 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.03 0.82 7.86 -2.39 -0.02 0.80 16 43 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.35 10.80 7.28 -89.70 -0.65 10.15 16 45 H 0.09 3.09 6.22 -2.39 -0.01 3.07 16 46 H 0.07 2.17 6.48 -2.39 -0.02 2.16 16 47 H 0.39 20.15 7.90 -92.71 -0.73 19.41 16 48 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -78.01 396.57 -0.38 -78.39 By element: Atomic # 1 Polarization: 55.89 SS G_CDS: -1.10 Total: 54.80 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 8.77 Total: 31.41 kcal Atomic # 7 Polarization: -146.63 SS G_CDS: -9.98 Total: -156.61 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.11 Total: -54.14 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -78.01 -0.38 -78.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567958560.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.912 kcal (2) G-P(sol) polarization free energy of solvation -78.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds